Wall clock time and date at job start Wed Apr 1 2020 05:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47234 * 2 1 4 4 N 1.46496 * 109.46787 * 120.00276 * 2 1 3 5 5 C 1.46498 * 120.00070 * 120.28141 * 4 2 1 6 6 C 1.50701 * 109.47417 * 89.99566 * 5 4 2 7 7 O 1.21289 * 120.00054 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99765 * 179.97438 * 6 5 4 9 9 C 1.37103 * 119.99832 * 179.97438 * 8 6 5 10 10 H 1.07998 * 119.99833 * 0.02562 * 9 8 6 11 11 C 1.38947 * 119.99965 * 180.02562 * 9 8 6 12 12 N 1.31412 * 120.00293 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00082 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46942 * 59.99567 * 13 11 9 15 15 H 1.48501 * 109.47505 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.47007 * 300.00021 * 13 11 9 17 17 C 1.39672 * 120.00187 * 300.27223 * 4 2 1 18 18 C 1.38909 * 120.07326 * 358.68289 * 17 4 2 19 19 C 1.38105 * 119.92677 * 179.76426 * 18 17 4 20 20 C 1.38289 * 120.07393 * 0.51340 * 19 18 17 21 21 C 1.50702 * 119.92580 * 179.72039 * 20 19 18 22 22 C 1.50694 * 109.47117 * 270.01861 * 21 20 19 23 23 O 1.21282 * 119.99974 * 0.02562 * 22 21 20 24 24 N 1.34772 * 120.00272 * 180.02562 * 22 21 20 25 25 C 1.46505 * 120.00488 * 180.02562 * 24 22 21 26 26 C 1.46506 * 119.99740 * 359.97438 * 24 22 21 27 27 C 1.38286 * 120.14595 * 359.73878 * 20 19 18 28 28 C 1.38101 * 120.07821 * 0.02562 * 27 20 19 29 29 H 1.09004 * 109.47069 * 304.66099 * 1 2 3 30 30 H 1.09006 * 109.47054 * 64.66153 * 1 2 3 31 31 H 1.09003 * 109.47727 * 184.65776 * 1 2 3 32 32 H 1.09000 * 109.46855 * 239.99825 * 2 1 3 33 33 H 1.08993 * 109.46963 * 188.91596 * 3 2 1 34 34 H 1.09001 * 109.47413 * 308.91691 * 3 2 1 35 35 H 1.08999 * 109.46896 * 68.91438 * 3 2 1 36 36 H 1.09005 * 109.46949 * 209.99605 * 5 4 2 37 37 H 1.08997 * 109.47314 * 329.99149 * 5 4 2 38 38 H 0.97001 * 120.00282 * 0.02562 * 8 6 5 39 39 H 0.97001 * 120.00377 * 180.02562 * 12 11 9 40 40 H 1.08001 * 120.04233 * 0.02562 * 18 17 4 41 41 H 1.07998 * 119.96882 * 180.24965 * 19 18 17 42 42 H 1.08998 * 109.46944 * 30.02012 * 21 20 19 43 43 H 1.09005 * 109.46790 * 150.02164 * 21 20 19 44 44 H 1.08996 * 109.46980 * 89.99419 * 25 24 22 45 45 H 1.08998 * 109.46891 * 209.99377 * 25 24 22 46 46 H 1.08996 * 109.46619 * 329.99525 * 25 24 22 47 47 H 1.09006 * 109.46625 * 60.00836 * 26 24 22 48 48 H 1.09005 * 109.46913 * 179.97438 * 26 24 22 49 49 H 1.08998 * 109.47298 * 300.00631 * 26 24 22 50 50 H 1.08007 * 119.96267 * 180.02562 * 27 20 19 51 51 H 1.07998 * 120.03690 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 2.8655 -1.8782 1.0617 6 6 4.3129 -1.4605 1.0196 7 8 4.6077 -0.2864 1.0941 8 7 5.2797 -2.3918 0.8993 9 6 6.5964 -2.0118 0.8605 10 1 6.8589 -0.9663 0.9268 11 6 7.5932 -2.9718 0.7359 12 7 7.2739 -4.2440 0.6557 13 14 9.3873 -2.4541 0.6837 14 1 9.7327 -1.7389 1.9385 15 1 10.2462 -3.6579 0.5481 16 1 9.6092 -1.5538 -0.4763 17 6 1.6761 -0.2169 2.4647 18 6 0.8956 0.9249 2.5942 19 6 0.5550 1.3879 3.8499 20 6 0.9989 0.7223 4.9779 21 6 0.6305 1.2341 6.3466 22 6 1.6783 2.2098 6.8168 23 8 2.6301 2.4649 6.1099 24 7 1.5576 2.7990 8.0229 25 6 2.5758 3.7481 8.4799 26 6 0.4074 2.4913 8.8767 27 6 1.7804 -0.4117 4.8526 28 6 2.1206 -0.8829 3.5998 29 1 -0.3633 0.5845 0.8453 30 1 -0.3633 0.4398 -0.9289 31 1 -0.3635 -1.0243 0.0834 32 1 1.8933 -0.5139 -0.8900 33 1 3.1182 1.4466 -0.1593 34 1 1.5525 2.0003 -0.7996 35 1 1.8125 1.9082 0.9589 36 1 2.7026 -2.5390 1.9132 37 1 2.6119 -2.4031 0.1408 38 1 5.0439 -3.3308 0.8394 39 1 7.9697 -4.9142 0.5691 40 1 0.5519 1.4476 1.7138 41 1 -0.0551 2.2732 3.9513 42 1 -0.3367 1.7343 6.2993 43 1 0.5736 0.3981 7.0439 44 1 2.3023 4.7546 8.1637 45 1 2.6421 3.7142 9.5673 46 1 3.5406 3.4813 8.0485 47 1 0.3976 1.4249 9.1024 48 1 0.4819 3.0581 9.8048 49 1 -0.5125 2.7615 8.3583 50 1 2.1252 -0.9295 5.7356 51 1 2.7313 -1.7683 3.5028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799354400.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:41 Heat of formation + Delta-G solvation = -42.258146 kcal Electronic energy + Delta-G solvation = -31002.119926 eV Core-core repulsion = 26901.440695 eV Total energy + Delta-G solvation = -4100.679231 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.32586 -40.70289 -39.68099 -37.81645 -36.45771 -35.94115 -34.12913 -33.32611 -32.84115 -31.29078 -29.76298 -28.59644 -28.00549 -27.63468 -26.45026 -25.67890 -23.50631 -22.72613 -21.61467 -20.76667 -20.17453 -19.92280 -17.93628 -17.89515 -17.75571 -17.35329 -17.02153 -16.70816 -16.54583 -16.20536 -15.70506 -15.56047 -15.11312 -14.98285 -14.93301 -14.55790 -14.44195 -14.17991 -13.93510 -13.78733 -13.69354 -13.54665 -13.50492 -13.42985 -13.23265 -13.00629 -12.86040 -12.78774 -12.73100 -12.59285 -12.47226 -12.27890 -12.20999 -12.16403 -11.73706 -11.51977 -11.08030 -11.03537 -10.73037 -10.15836 -10.02470 -9.68105 -9.63152 -8.50129 -8.03858 -5.97173 0.64829 0.73527 1.34975 1.36559 1.47457 1.69200 2.03548 2.09403 2.19090 2.30339 3.02492 3.17118 3.31581 3.79373 3.85995 3.95797 4.01825 4.17051 4.19473 4.26898 4.36708 4.38048 4.40348 4.44596 4.47122 4.48418 4.52059 4.59820 4.65492 4.73097 4.77709 4.80001 4.86704 4.91003 4.95624 4.99665 5.00687 5.04985 5.22652 5.37324 5.37666 5.46931 5.52087 5.56630 5.59860 5.83657 5.94684 6.08810 6.39708 6.42030 6.60497 6.69521 7.11539 7.26349 7.54796 8.11810 8.68126 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009383 B = 0.002927 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.358962 B = 9562.850700 C =11563.991330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 C -0.173 4.173 4 N -0.601 5.601 5 C 0.120 3.880 6 C 0.418 3.582 7 O -0.618 6.618 8 N -0.573 5.573 9 C -0.332 4.332 10 H 0.071 0.929 11 C -0.010 4.010 12 N -0.918 5.918 13 Si 0.988 3.012 14 H -0.277 1.277 15 H -0.266 1.266 16 H -0.272 1.272 17 C 0.221 3.779 18 C -0.214 4.214 19 C -0.068 4.068 20 C -0.142 4.142 21 C -0.076 4.076 22 C 0.499 3.501 23 O -0.587 6.587 24 N -0.628 5.628 25 C 0.081 3.919 26 C 0.071 3.929 27 C -0.070 4.070 28 C -0.219 4.219 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.025 0.975 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.152 0.848 41 H 0.139 0.861 42 H 0.130 0.870 43 H 0.122 0.878 44 H 0.056 0.944 45 H 0.100 0.900 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.097 0.903 49 H 0.079 0.921 50 H 0.122 0.878 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.331 8.663 12.913 27.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 C -0.231 4.231 4 N -0.310 5.310 5 C -0.007 4.007 6 C 0.204 3.796 7 O -0.504 6.504 8 N -0.211 5.211 9 C -0.462 4.462 10 H 0.089 0.911 11 C -0.210 4.210 12 N -0.559 5.559 13 Si 0.812 3.188 14 H -0.202 1.202 15 H -0.190 1.190 16 H -0.198 1.198 17 C 0.119 3.881 18 C -0.235 4.235 19 C -0.087 4.087 20 C -0.145 4.145 21 C -0.115 4.115 22 C 0.289 3.711 23 O -0.467 6.467 24 N -0.362 5.362 25 C -0.062 4.062 26 C -0.070 4.070 27 C -0.089 4.089 28 C -0.242 4.242 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.135 0.865 38 H 0.230 0.770 39 H 0.088 0.912 40 H 0.169 0.831 41 H 0.157 0.843 42 H 0.148 0.852 43 H 0.140 0.860 44 H 0.075 0.925 45 H 0.119 0.881 46 H 0.063 0.937 47 H 0.093 0.907 48 H 0.115 0.885 49 H 0.097 0.903 50 H 0.140 0.860 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.495 9.342 12.408 26.519 hybrid contribution 1.809 -0.411 -0.207 1.866 sum -19.687 8.931 12.201 24.823 Atomic orbital electron populations 1.22385 0.92751 1.03168 1.03790 1.21059 0.95316 0.92612 0.86552 1.22401 1.00395 0.97192 1.03106 1.46354 1.51780 1.29682 1.03172 1.21195 0.85904 0.88503 1.05145 1.21747 0.89355 0.86231 0.82279 1.90513 1.84250 1.19611 1.56041 1.41947 1.05417 1.08950 1.64807 1.19535 0.83077 0.94090 1.49470 0.91083 1.25963 1.03944 0.94760 0.96362 1.69652 1.35882 1.00454 1.49946 0.85068 0.77084 0.77903 0.78740 1.20210 1.18982 1.19766 1.17924 0.92594 0.92810 0.84768 1.21307 1.05212 0.97779 0.99203 1.20990 0.98178 0.98195 0.91327 1.19245 1.03051 0.97251 0.94906 1.20563 0.98185 0.98638 0.94163 1.21413 0.87176 0.81600 0.80928 1.90761 1.35180 1.64638 1.56134 1.48007 1.26071 1.44324 1.17753 1.21718 0.91208 0.92182 1.01074 1.22124 0.87024 1.02753 0.95099 1.20822 0.95763 0.96159 0.96157 1.20732 1.07120 1.03571 0.92743 0.90814 0.89606 0.91945 0.90156 0.95611 0.89544 0.91599 0.87725 0.86480 0.76955 0.91243 0.83093 0.84306 0.85179 0.86049 0.92514 0.88142 0.93746 0.90682 0.88474 0.90250 0.85970 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 8.98 71.98 0.65 -2.77 16 2 C 0.15 4.33 3.28 44.99 0.15 4.48 16 3 C -0.17 -5.51 8.97 71.98 0.65 -4.86 16 4 N -0.60 -20.95 2.02 -677.68 -1.37 -22.32 16 5 C 0.12 4.42 5.63 85.63 0.48 4.90 16 6 C 0.42 20.89 7.85 87.66 0.69 21.58 16 7 O -0.62 -36.45 15.53 -3.06 -0.05 -36.50 16 8 N -0.57 -30.62 5.29 -306.99 -1.62 -32.24 16 9 C -0.33 -19.75 9.68 84.04 0.81 -18.93 16 10 H 0.07 4.57 7.16 -2.91 -0.02 4.55 16 11 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 12 N -0.92 -50.88 13.05 21.66 0.28 -50.60 16 13 Si 0.99 44.99 29.55 68.60 2.03 47.02 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 C 0.22 7.88 6.14 38.21 0.23 8.11 16 18 C -0.21 -6.56 6.77 22.40 0.15 -6.41 16 19 C -0.07 -1.89 9.69 22.25 0.22 -1.67 16 20 C -0.14 -3.93 4.38 -19.84 -0.09 -4.02 16 21 C -0.08 -1.42 4.64 29.10 0.14 -1.29 16 22 C 0.50 12.72 7.67 87.66 0.67 13.39 16 23 O -0.59 -22.59 15.61 -3.03 -0.05 -22.64 16 24 N -0.63 -10.99 3.27 -871.88 -2.85 -13.85 16 25 C 0.08 1.37 10.41 127.77 1.33 2.70 16 26 C 0.07 0.48 9.74 127.77 1.24 1.72 16 27 C -0.07 -2.26 9.69 22.25 0.22 -2.05 16 28 C -0.22 -8.08 9.22 22.40 0.21 -7.87 16 29 H 0.07 1.54 4.80 -2.38 -0.01 1.52 16 30 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 2.33 7.79 -2.39 -0.02 2.31 16 33 H 0.02 1.03 7.66 -2.39 -0.02 1.01 16 34 H 0.09 2.10 8.12 -2.39 -0.02 2.08 16 35 H 0.07 2.17 4.65 -2.39 -0.01 2.16 16 36 H 0.10 3.52 6.16 -2.38 -0.01 3.51 16 37 H 0.12 3.57 7.92 -2.39 -0.02 3.55 16 38 H 0.40 19.91 7.90 -92.71 -0.73 19.17 16 39 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 40 H 0.15 4.07 3.40 -2.91 -0.01 4.06 16 41 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 42 H 0.13 1.49 7.81 -2.39 -0.02 1.47 16 43 H 0.12 1.62 7.81 -2.38 -0.02 1.60 16 44 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.10 0.98 7.92 -2.39 -0.02 0.96 16 46 H 0.04 1.05 7.42 -2.39 -0.02 1.03 16 47 H 0.07 0.35 7.85 -2.38 -0.02 0.33 16 48 H 0.10 0.27 7.79 -2.38 -0.02 0.25 16 49 H 0.08 0.30 7.85 -2.39 -0.02 0.28 16 50 H 0.12 3.48 8.06 -2.91 -0.02 3.46 16 51 H 0.10 3.98 6.12 -2.91 -0.02 3.96 16 Total: -1.00 -85.67 408.86 4.80 -80.87 By element: Atomic # 1 Polarization: 43.13 SS G_CDS: 0.22 Total: 43.35 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 8.21 Total: 6.90 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -5.56 Total: -119.00 kcal Atomic # 8 Polarization: -59.04 SS G_CDS: -0.09 Total: -59.13 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -85.67 4.80 -80.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799354400.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.611 kcal (2) G-P(sol) polarization free energy of solvation -85.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds