Wall clock time and date at job start Wed Apr 1 2020 05:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47240 * 2 1 4 4 N 1.46498 * 109.47097 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99367 * 90.00451 * 4 3 2 6 6 O 1.21595 * 119.99951 * 174.29354 * 5 4 3 7 7 N 1.34771 * 120.00549 * 354.29773 * 5 4 3 8 8 C 1.46505 * 120.00492 * 184.97786 * 7 5 4 9 9 C 1.50693 * 109.47105 * 179.97438 * 8 7 5 10 10 C 1.38298 * 119.92953 * 90.00315 * 9 8 7 11 11 C 1.38103 * 120.06817 * 179.97438 * 10 9 8 12 12 C 1.38877 * 119.93179 * 359.97438 * 11 10 9 13 13 O 1.35754 * 120.07095 * 180.02562 * 12 11 10 14 14 C 1.34829 * 116.99608 * 354.60145 * 13 12 11 15 15 H 1.07997 * 120.00321 * 5.05396 * 14 13 12 16 16 C 1.38658 * 120.00105 * 185.04322 * 14 13 12 17 17 N 1.31557 * 119.99539 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00504 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46826 * 60.00173 * 18 16 14 20 20 H 1.48498 * 109.47483 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47059 * 300.00624 * 18 16 14 22 22 C 1.38873 * 119.86189 * 0.02562 * 12 11 10 23 23 C 1.38106 * 119.93213 * 0.02562 * 22 12 11 24 24 C 1.46495 * 120.00623 * 270.00393 * 4 3 2 25 25 H 1.09006 * 110.28402 * 6.36512 * 24 4 3 26 26 C 1.54258 * 110.32763 * 244.24386 * 24 4 3 27 27 C 1.54377 * 105.06293 * 241.10319 * 26 24 4 28 28 N 1.48565 * 104.59242 * 23.84921 * 27 26 24 29 29 C 1.48555 * 104.22111 * 320.51673 * 28 27 26 30 30 H 1.08997 * 109.47137 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46973 * 299.99423 * 1 2 3 32 32 H 1.08992 * 109.47286 * 59.99468 * 1 2 3 33 33 H 1.09003 * 109.47283 * 240.00708 * 2 1 3 34 34 H 1.09000 * 109.47453 * 120.00290 * 2 1 3 35 35 H 1.09007 * 109.46438 * 60.00656 * 3 2 1 36 36 H 1.08992 * 109.47415 * 300.00452 * 3 2 1 37 37 H 0.97001 * 119.99550 * 4.97036 * 7 5 4 38 38 H 1.09005 * 109.46922 * 59.99285 * 8 7 5 39 39 H 1.08998 * 109.46451 * 299.99674 * 8 7 5 40 40 H 1.08002 * 119.96957 * 0.24970 * 10 9 8 41 41 H 1.08005 * 120.03324 * 179.97438 * 11 10 9 42 42 H 0.97003 * 119.99794 * 179.97438 * 17 16 14 43 43 H 1.08000 * 120.03697 * 179.97438 * 22 12 11 44 44 H 1.07997 * 119.96768 * 179.97438 * 23 22 12 45 45 H 1.09004 * 110.32103 * 359.97438 * 26 24 4 46 46 H 1.08992 * 110.32873 * 122.20309 * 26 24 4 47 47 H 1.08995 * 110.41526 * 142.62680 * 27 26 24 48 48 H 1.09000 * 110.40939 * 264.95807 * 27 26 24 49 49 H 1.00900 * 110.99712 * 200.96376 * 28 27 26 50 50 H 1.08998 * 110.41482 * 280.70298 * 29 28 27 51 51 H 1.09007 * 110.41315 * 158.26042 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1792 1.4424 -1.1664 6 8 5.3907 1.5471 -1.1686 7 7 3.5109 1.3264 -2.3309 8 6 4.2491 1.2165 -3.5916 9 6 3.2752 1.0985 -4.7354 10 6 2.8160 2.2377 -5.3710 11 6 1.9238 2.1328 -6.4199 12 6 1.4881 0.8817 -6.8366 13 8 0.6115 0.7753 -7.8677 14 6 0.1164 1.9240 -8.3711 15 1 0.4815 2.8738 -8.0093 16 6 -0.8614 1.8858 -9.3535 17 7 -1.3063 0.7288 -9.7940 18 14 -1.5469 3.4771 -10.0514 19 1 -0.4474 4.2604 -10.6700 20 1 -2.5724 3.1656 -11.0793 21 1 -2.1662 4.2703 -8.9595 22 6 1.9511 -0.2603 -6.1963 23 6 2.8424 -0.1488 -5.1473 24 6 4.2371 1.4426 1.2695 25 1 3.5457 1.3293 2.1047 26 6 5.0494 2.7454 1.4195 27 6 6.5221 2.2917 1.5106 28 7 6.5470 0.9647 0.8430 29 6 5.2874 0.3113 1.2828 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 1.9564 -0.8899 37 1 2.5409 1.3155 -2.3343 38 1 4.8856 0.3320 -3.5639 39 1 4.8664 2.1042 -3.7296 40 1 3.1588 3.2101 -5.0496 41 1 1.5652 3.0229 -6.9156 42 1 -1.9906 0.7020 -10.4810 43 1 1.6138 -1.2347 -6.5178 44 1 3.2025 -1.0366 -4.6487 45 1 4.9037 3.3846 0.5487 46 1 4.7581 3.2706 2.3290 47 1 7.1694 2.9937 0.9851 48 1 6.8280 2.2006 2.5528 49 1 7.3520 0.4295 1.1321 50 1 5.3995 -0.0917 2.2893 51 1 5.0050 -0.4778 0.5857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841784134.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:42 Heat of formation + Delta-G solvation = -9.255056 kcal Electronic energy + Delta-G solvation = -30787.997188 eV Core-core repulsion = 26688.749078 eV Total energy + Delta-G solvation = -4099.248109 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.53342 -39.12769 -37.88852 -36.72068 -36.02312 -34.03855 -32.79546 -32.32659 -30.27257 -30.12032 -29.46598 -28.37441 -26.24212 -25.63745 -24.50733 -22.22722 -22.00570 -21.64313 -21.41478 -20.51451 -19.43575 -18.04914 -17.86879 -17.06605 -16.69320 -16.37904 -15.44260 -15.16306 -14.97528 -14.67732 -14.60940 -14.31522 -14.21508 -13.85909 -13.66035 -13.55131 -13.46872 -13.16904 -12.74671 -12.65173 -12.62148 -12.35308 -12.31548 -12.11786 -11.93694 -11.83113 -11.60920 -11.48789 -11.34764 -11.32047 -11.10524 -10.95587 -10.90366 -10.74826 -10.63316 -10.48483 -9.60214 -9.39805 -8.88366 -8.81022 -8.50899 -8.27007 -8.24058 -7.28685 -6.50692 -4.09583 2.09699 2.16873 2.81916 3.10234 3.11051 3.13884 3.50273 3.92145 4.04280 4.19325 4.52934 4.55716 4.59406 4.67882 4.84546 4.95518 5.00959 5.04378 5.04512 5.14531 5.20899 5.25794 5.32657 5.38607 5.39104 5.52106 5.54612 5.59310 5.62599 5.72809 5.80932 5.84005 5.89469 5.90482 6.01057 6.04364 6.07975 6.15853 6.40217 6.50025 6.64203 6.79781 6.82503 6.85051 6.98243 7.07460 7.20040 7.30344 7.32962 7.38479 7.75655 7.94096 8.20733 8.94662 8.94927 9.63532 10.66873 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016993 B = 0.002174 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.370469 B =12877.495534 C =13364.136275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.143 4.143 3 C 0.110 3.890 4 N -0.630 5.630 5 C 0.688 3.312 6 O -0.539 6.539 7 N -0.744 5.744 8 C 0.201 3.799 9 C -0.210 4.210 10 C -0.051 4.051 11 C -0.237 4.237 12 C 0.160 3.840 13 O -0.174 6.174 14 C -0.393 4.393 15 H 0.092 0.908 16 C 0.040 3.960 17 N -0.861 5.861 18 Si 0.941 3.059 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.196 4.196 23 C -0.054 4.054 24 C 0.166 3.834 25 H 0.089 0.911 26 C -0.130 4.130 27 C 0.047 3.953 28 N -0.623 5.623 29 C 0.033 3.967 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.392 0.608 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.127 0.873 42 H 0.271 0.729 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.028 0.972 49 H 0.323 0.677 50 H 0.037 0.963 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.496 1.254 23.817 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.182 4.182 3 C -0.013 4.013 4 N -0.368 5.368 5 C 0.389 3.611 6 O -0.412 6.412 7 N -0.402 5.402 8 C 0.077 3.923 9 C -0.212 4.212 10 C -0.070 4.070 11 C -0.256 4.256 12 C 0.105 3.895 13 O -0.077 6.077 14 C -0.469 4.469 15 H 0.110 0.890 16 C -0.165 4.165 17 N -0.495 5.495 18 Si 0.766 3.234 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.195 1.195 22 C -0.215 4.215 23 C -0.073 4.073 24 C 0.060 3.940 25 H 0.107 0.893 26 C -0.169 4.169 27 C -0.083 4.083 28 N -0.251 5.251 29 C -0.097 4.097 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.227 0.773 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.125 0.875 41 H 0.145 0.855 42 H 0.081 0.919 43 H 0.135 0.865 44 H 0.129 0.871 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.046 0.954 49 H 0.138 0.862 50 H 0.055 0.945 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.961 1.259 22.781 24.165 hybrid contribution -0.824 0.567 0.575 1.154 sum 7.137 1.826 23.356 24.491 Atomic orbital electron populations 1.21718 0.95041 1.02180 1.02047 1.21998 0.96207 0.97227 1.02814 1.21589 0.80069 0.96804 1.02883 1.47283 1.05307 1.79615 1.04572 1.16105 0.85853 0.78922 0.80180 1.91114 1.10385 1.54424 1.85238 1.45713 1.09805 1.79456 1.05226 1.19742 0.91908 1.01219 0.79389 1.19275 1.06264 0.93607 1.02010 1.20648 0.95025 0.96942 0.94390 1.21154 1.04437 0.97886 1.02146 1.19430 0.89574 0.93179 0.87306 1.83979 1.50348 1.33774 1.39612 1.21296 1.20791 0.84064 1.20780 0.89024 1.25305 0.95866 0.98940 0.96349 1.70028 1.27517 1.24461 1.27485 0.85774 0.78867 0.79935 0.78843 1.19437 1.20237 1.19469 1.20208 1.04168 0.97029 1.00080 1.20529 0.95358 0.96148 0.95273 1.21503 0.92943 0.94758 0.84769 0.89265 1.22684 0.94810 0.97510 1.01926 1.22746 0.96853 0.93195 0.95510 1.63864 1.02515 1.02500 1.56242 1.23174 0.91691 0.96910 0.97951 0.92396 0.92780 0.92164 0.91352 0.91879 0.90636 0.90692 0.77277 0.92073 0.92025 0.87463 0.85510 0.91877 0.86477 0.87056 0.90279 0.91670 0.90525 0.95353 0.86212 0.94482 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.76 16 2 C -0.14 -1.15 6.25 -26.73 -0.17 -1.32 16 3 C 0.11 0.91 5.05 -4.04 -0.02 0.89 16 4 N -0.63 -6.54 2.39 -170.22 -0.41 -6.95 16 5 C 0.69 9.42 7.30 -86.92 -0.63 8.78 16 6 O -0.54 -8.93 12.39 5.28 0.07 -8.86 16 7 N -0.74 -9.89 5.41 -66.41 -0.36 -10.25 16 8 C 0.20 2.95 5.80 -5.19 -0.03 2.92 16 9 C -0.21 -3.44 5.25 -104.58 -0.55 -3.99 16 10 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 11 C -0.24 -4.95 9.17 -39.39 -0.36 -5.31 16 12 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 13 O -0.17 -4.86 9.76 0.04 0.00 -4.86 16 14 C -0.39 -10.73 9.49 30.89 0.29 -10.44 16 15 H 0.09 2.31 5.20 -52.49 -0.27 2.03 16 16 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 17 N -0.86 -24.78 13.67 55.48 0.76 -24.02 16 18 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 22 C -0.20 -3.97 9.99 -39.39 -0.39 -4.37 16 23 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 24 C 0.17 1.51 3.56 -66.55 -0.24 1.28 16 25 H 0.09 0.61 7.90 -51.93 -0.41 0.20 16 26 C -0.13 -1.23 6.08 -25.35 -0.15 -1.38 16 27 C 0.05 0.45 7.28 -2.18 -0.02 0.44 16 28 N -0.62 -7.00 5.27 -109.66 -0.58 -7.58 16 29 C 0.03 0.33 6.39 -2.18 -0.01 0.31 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.50 8.00 -51.92 -0.42 0.08 16 36 H 0.07 0.65 6.54 -51.93 -0.34 0.31 16 37 H 0.39 4.85 6.28 -40.82 -0.26 4.60 16 38 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 40 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.13 2.67 5.64 -52.48 -0.30 2.37 16 42 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 44 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.08 0.95 7.39 -51.93 -0.38 0.56 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 49 H 0.32 3.09 8.92 -39.29 -0.35 2.74 16 50 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 51 H 0.08 0.93 7.84 -51.93 -0.41 0.52 16 LS Contribution 408.46 15.07 6.16 6.16 Total: -1.00 -31.48 408.46 -10.61 -42.09 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -8.18 Total: 10.29 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -3.04 Total: -11.10 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.59 Total: -48.79 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.07 Total: -13.72 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.48 -10.61 -42.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841784134.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.833 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds