Wall clock time and date at job start Wed Apr 1 2020 05:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47240 * 2 1 4 4 N 1.46498 * 109.47097 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99367 * 90.00451 * 4 3 2 6 6 O 1.21595 * 119.99951 * 174.29354 * 5 4 3 7 7 N 1.34771 * 120.00549 * 354.29773 * 5 4 3 8 8 C 1.46505 * 120.00492 * 184.97786 * 7 5 4 9 9 C 1.50693 * 109.47105 * 179.97438 * 8 7 5 10 10 C 1.38298 * 119.92953 * 90.00315 * 9 8 7 11 11 C 1.38103 * 120.06817 * 179.97438 * 10 9 8 12 12 C 1.38877 * 119.93179 * 359.97438 * 11 10 9 13 13 O 1.35754 * 120.07095 * 180.02562 * 12 11 10 14 14 C 1.34829 * 116.99608 * 354.60145 * 13 12 11 15 15 H 1.07997 * 120.00321 * 5.05396 * 14 13 12 16 16 C 1.38658 * 120.00105 * 185.04322 * 14 13 12 17 17 N 1.31557 * 119.99539 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00504 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46826 * 60.00173 * 18 16 14 20 20 H 1.48498 * 109.47483 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47059 * 300.00624 * 18 16 14 22 22 C 1.38873 * 119.86189 * 0.02562 * 12 11 10 23 23 C 1.38106 * 119.93213 * 0.02562 * 22 12 11 24 24 C 1.46495 * 120.00623 * 270.00393 * 4 3 2 25 25 H 1.09006 * 110.28402 * 6.36512 * 24 4 3 26 26 C 1.54258 * 110.32763 * 244.24386 * 24 4 3 27 27 C 1.54377 * 105.06293 * 241.10319 * 26 24 4 28 28 N 1.48565 * 104.59242 * 23.84921 * 27 26 24 29 29 C 1.48555 * 104.22111 * 320.51673 * 28 27 26 30 30 H 1.08997 * 109.47137 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46973 * 299.99423 * 1 2 3 32 32 H 1.08992 * 109.47286 * 59.99468 * 1 2 3 33 33 H 1.09003 * 109.47283 * 240.00708 * 2 1 3 34 34 H 1.09000 * 109.47453 * 120.00290 * 2 1 3 35 35 H 1.09007 * 109.46438 * 60.00656 * 3 2 1 36 36 H 1.08992 * 109.47415 * 300.00452 * 3 2 1 37 37 H 0.97001 * 119.99550 * 4.97036 * 7 5 4 38 38 H 1.09005 * 109.46922 * 59.99285 * 8 7 5 39 39 H 1.08998 * 109.46451 * 299.99674 * 8 7 5 40 40 H 1.08002 * 119.96957 * 0.24970 * 10 9 8 41 41 H 1.08005 * 120.03324 * 179.97438 * 11 10 9 42 42 H 0.97003 * 119.99794 * 179.97438 * 17 16 14 43 43 H 1.08000 * 120.03697 * 179.97438 * 22 12 11 44 44 H 1.07997 * 119.96768 * 179.97438 * 23 22 12 45 45 H 1.09004 * 110.32103 * 359.97438 * 26 24 4 46 46 H 1.08992 * 110.32873 * 122.20309 * 26 24 4 47 47 H 1.08995 * 110.41526 * 142.62680 * 27 26 24 48 48 H 1.09000 * 110.40939 * 264.95807 * 27 26 24 49 49 H 1.00900 * 110.99712 * 200.96376 * 28 27 26 50 50 H 1.08998 * 110.41482 * 280.70298 * 29 28 27 51 51 H 1.09007 * 110.41315 * 158.26042 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1792 1.4424 -1.1664 6 8 5.3907 1.5471 -1.1686 7 7 3.5109 1.3264 -2.3309 8 6 4.2491 1.2165 -3.5916 9 6 3.2752 1.0985 -4.7354 10 6 2.8160 2.2377 -5.3710 11 6 1.9238 2.1328 -6.4199 12 6 1.4881 0.8817 -6.8366 13 8 0.6115 0.7753 -7.8677 14 6 0.1164 1.9240 -8.3711 15 1 0.4815 2.8738 -8.0093 16 6 -0.8614 1.8858 -9.3535 17 7 -1.3063 0.7288 -9.7940 18 14 -1.5469 3.4771 -10.0514 19 1 -0.4474 4.2604 -10.6700 20 1 -2.5724 3.1656 -11.0793 21 1 -2.1662 4.2703 -8.9595 22 6 1.9511 -0.2603 -6.1963 23 6 2.8424 -0.1488 -5.1473 24 6 4.2371 1.4426 1.2695 25 1 3.5457 1.3293 2.1047 26 6 5.0494 2.7454 1.4195 27 6 6.5221 2.2917 1.5106 28 7 6.5470 0.9647 0.8430 29 6 5.2874 0.3113 1.2828 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 1.9564 -0.8899 37 1 2.5409 1.3155 -2.3343 38 1 4.8856 0.3320 -3.5639 39 1 4.8664 2.1042 -3.7296 40 1 3.1588 3.2101 -5.0496 41 1 1.5652 3.0229 -6.9156 42 1 -1.9906 0.7020 -10.4810 43 1 1.6138 -1.2347 -6.5178 44 1 3.2025 -1.0366 -4.6487 45 1 4.9037 3.3846 0.5487 46 1 4.7581 3.2706 2.3290 47 1 7.1694 2.9937 0.9851 48 1 6.8280 2.2006 2.5528 49 1 7.3520 0.4295 1.1321 50 1 5.3995 -0.0917 2.2893 51 1 5.0050 -0.4778 0.5857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841784134.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:41 Heat of formation + Delta-G solvation = -29.155812 kcal Electronic energy + Delta-G solvation = -30788.860149 eV Core-core repulsion = 26688.749078 eV Total energy + Delta-G solvation = -4100.111071 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.47982 -40.78122 -38.97035 -38.20282 -36.86032 -35.30500 -34.23246 -33.53806 -31.83617 -31.41350 -30.37044 -29.20267 -27.65536 -26.88199 -25.86676 -23.63492 -23.07725 -22.36674 -22.27551 -21.91209 -20.46951 -19.85113 -18.92341 -18.61142 -17.64254 -17.20558 -16.62346 -16.38711 -16.15581 -16.06229 -15.89968 -15.55349 -15.49908 -15.17080 -14.99707 -14.70574 -14.50749 -14.34573 -14.17737 -13.94562 -13.61826 -13.33012 -13.23859 -13.01561 -12.97892 -12.93579 -12.79300 -12.59910 -12.50935 -12.36701 -12.21474 -12.14786 -12.09778 -12.01828 -11.82719 -11.59407 -11.19601 -10.83070 -10.66069 -9.89413 -9.79865 -9.41495 -9.03766 -8.98779 -8.47371 -6.15572 0.55662 0.58357 1.36051 1.45699 1.51858 1.87962 2.17878 2.46255 2.78316 3.07858 3.28888 3.47393 3.49353 3.82416 3.87742 3.92968 3.98534 4.04860 4.17405 4.18546 4.28717 4.36555 4.40763 4.49305 4.50442 4.57882 4.61978 4.69174 4.73715 4.79520 4.83206 4.84923 4.92938 4.96739 5.05803 5.08516 5.15258 5.21411 5.25294 5.27180 5.27640 5.46197 5.52517 5.68509 5.71371 5.74274 5.78190 6.02069 6.08047 6.12499 6.17281 6.59725 6.97273 7.19516 7.76632 7.90786 8.75204 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016993 B = 0.002174 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.370469 B =12877.495534 C =13364.136275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.109 3.891 4 N -0.623 5.623 5 C 0.685 3.315 6 O -0.570 6.570 7 N -0.741 5.741 8 C 0.210 3.790 9 C -0.179 4.179 10 C -0.046 4.046 11 C -0.242 4.242 12 C 0.123 3.877 13 O -0.228 6.228 14 C -0.414 4.414 15 H 0.103 0.897 16 C -0.021 4.021 17 N -0.919 5.919 18 Si 1.017 2.983 19 H -0.258 1.258 20 H -0.273 1.273 21 H -0.256 1.256 22 C -0.203 4.203 23 C -0.044 4.044 24 C 0.161 3.839 25 H 0.123 0.877 26 C -0.127 4.127 27 C 0.048 3.952 28 N -0.652 5.652 29 C 0.036 3.964 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.398 0.602 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.136 0.864 41 H 0.121 0.879 42 H 0.273 0.727 43 H 0.115 0.885 44 H 0.144 0.856 45 H 0.049 0.951 46 H 0.092 0.908 47 H 0.058 0.942 48 H 0.051 0.949 49 H 0.328 0.672 50 H 0.061 0.939 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.087 2.512 27.204 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.014 4.014 4 N -0.360 5.360 5 C 0.386 3.614 6 O -0.445 6.445 7 N -0.400 5.400 8 C 0.086 3.914 9 C -0.180 4.180 10 C -0.065 4.065 11 C -0.261 4.261 12 C 0.072 3.928 13 O -0.135 6.135 14 C -0.490 4.490 15 H 0.120 0.880 16 C -0.219 4.219 17 N -0.556 5.556 18 Si 0.836 3.164 19 H -0.183 1.183 20 H -0.197 1.197 21 H -0.181 1.181 22 C -0.222 4.222 23 C -0.062 4.062 24 C 0.056 3.944 25 H 0.141 0.859 26 C -0.166 4.166 27 C -0.082 4.082 28 N -0.281 5.281 29 C -0.094 4.094 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.234 0.766 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.154 0.846 41 H 0.138 0.862 42 H 0.082 0.918 43 H 0.133 0.867 44 H 0.161 0.839 45 H 0.068 0.932 46 H 0.110 0.890 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.143 0.857 50 H 0.079 0.921 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.569 2.518 26.242 27.721 hybrid contribution -0.741 0.100 -0.157 0.764 sum 7.828 2.618 26.085 27.360 Atomic orbital electron populations 1.21697 0.94544 1.02168 1.02366 1.21905 0.96487 0.96865 1.02199 1.21738 0.78593 0.97131 1.03922 1.47295 1.06229 1.78453 1.04035 1.16244 0.85572 0.78671 0.80876 1.91102 1.11806 1.55829 1.85796 1.45508 1.09959 1.79672 1.04833 1.19569 0.91226 1.01395 0.79221 1.19534 1.04329 0.92949 1.01204 1.20912 0.93765 0.98767 0.93054 1.21229 1.05100 0.96783 1.03009 1.19960 0.90005 0.95171 0.87693 1.83949 1.52903 1.34386 1.42214 1.21784 1.21316 0.84631 1.21279 0.87985 1.26573 0.95962 1.02876 0.96502 1.70175 1.29153 1.27195 1.29123 0.84668 0.78276 0.75165 0.78271 1.18262 1.19710 1.18066 1.20426 1.04740 0.96302 1.00748 1.20837 0.93776 0.97767 0.93819 1.21781 0.93442 0.94278 0.84892 0.85946 1.22657 0.94715 0.97328 1.01863 1.22725 0.96908 0.92173 0.96364 1.63792 1.03380 1.03390 1.57537 1.23137 0.91280 0.96454 0.98520 0.92625 0.91166 0.93136 0.93408 0.91063 0.88037 0.91263 0.76617 0.91845 0.92090 0.84645 0.86164 0.91806 0.86684 0.83863 0.93199 0.88987 0.92357 0.93045 0.85679 0.92051 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.14 -1.83 6.25 30.59 0.19 -1.64 16 3 C 0.11 1.46 5.05 86.38 0.44 1.90 16 4 N -0.62 -11.36 2.39 -810.72 -1.94 -13.30 16 5 C 0.69 17.49 7.30 179.06 1.31 18.80 16 6 O -0.57 -18.20 12.39 -4.02 -0.05 -18.25 16 7 N -0.74 -18.09 5.41 -482.29 -2.61 -20.70 16 8 C 0.21 5.64 5.80 85.63 0.50 6.14 16 9 C -0.18 -5.46 5.25 -19.84 -0.10 -5.56 16 10 C -0.05 -1.55 9.69 22.25 0.22 -1.34 16 11 C -0.24 -10.16 9.17 22.39 0.21 -9.95 16 12 C 0.12 5.92 6.65 22.58 0.15 6.07 16 13 O -0.23 -13.46 9.76 -22.77 -0.22 -13.68 16 14 C -0.41 -23.64 9.49 67.92 0.64 -22.99 16 15 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 16 C -0.02 -1.19 5.49 84.83 0.47 -0.72 16 17 N -0.92 -55.63 13.67 21.61 0.30 -55.33 16 18 Si 1.02 42.10 29.55 68.60 2.03 44.12 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 20 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 22 C -0.20 -8.32 9.99 22.39 0.22 -8.09 16 23 C -0.04 -1.41 9.69 22.25 0.22 -1.19 16 24 C 0.16 2.42 3.56 45.89 0.16 2.58 16 25 H 0.12 1.07 7.90 -2.38 -0.02 1.05 16 26 C -0.13 -2.06 6.08 31.49 0.19 -1.87 16 27 C 0.05 0.84 7.28 86.45 0.63 1.47 16 28 N -0.65 -13.72 5.27 -500.86 -2.64 -16.37 16 29 C 0.04 0.63 6.39 86.45 0.55 1.18 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.10 0.90 8.00 -2.38 -0.02 0.88 16 36 H 0.07 1.03 6.54 -2.39 -0.02 1.02 16 37 H 0.40 8.94 6.28 -92.71 -0.58 8.35 16 38 H 0.06 1.74 8.08 -2.38 -0.02 1.72 16 39 H 0.06 1.71 8.08 -2.39 -0.02 1.69 16 40 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 41 H 0.12 5.15 5.64 -2.91 -0.02 5.13 16 42 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 44 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 45 H 0.05 1.12 7.39 -2.38 -0.02 1.10 16 46 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.33 5.91 8.92 -89.69 -0.80 5.11 16 50 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.06 1.24 7.84 -2.38 -0.02 1.22 16 Total: -1.00 -73.33 408.46 1.12 -72.22 By element: Atomic # 1 Polarization: 38.11 SS G_CDS: -0.44 Total: 37.68 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 6.70 Total: -16.39 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -6.90 Total: -105.70 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.27 Total: -31.93 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -73.33 1.12 -72.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841784134.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.060 kcal (2) G-P(sol) polarization free energy of solvation -73.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds