Wall clock time and date at job start Wed Apr 1 2020 05:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47246 * 2 1 4 4 N 1.46500 * 109.47134 * 119.99991 * 2 1 3 5 5 C 1.46496 * 119.99995 * 299.99818 * 4 2 1 6 6 C 1.34782 * 120.00044 * 119.99616 * 4 2 1 7 7 O 1.21594 * 119.99725 * 354.72735 * 6 4 2 8 8 C 1.47515 * 120.00039 * 174.71900 * 6 4 2 9 9 C 1.39683 * 120.20350 * 305.74735 * 8 6 4 10 10 C 1.37799 * 119.92333 * 180.27225 * 9 8 6 11 11 C 1.38564 * 120.32963 * 359.72142 * 10 9 8 12 12 C 1.38028 * 120.40612 * 359.97438 * 11 10 9 13 13 C 1.38853 * 120.06539 * 0.03709 * 12 11 10 14 14 N 1.39293 * 120.16072 * 179.97438 * 13 12 11 15 15 C 1.34771 * 120.00130 * 335.20336 * 14 13 12 16 16 O 1.21279 * 120.00120 * 354.22492 * 15 14 13 17 17 C 1.50696 * 120.00075 * 174.22110 * 15 14 13 18 18 H 1.09001 * 109.46930 * 40.00215 * 17 15 14 19 19 N 1.46905 * 109.47476 * 160.00365 * 17 15 14 20 20 C 1.53007 * 109.47420 * 280.00209 * 17 15 14 21 21 C 1.52997 * 109.47044 * 174.99588 * 20 17 15 22 22 C 1.50709 * 109.46551 * 180.02562 * 21 20 17 23 23 H 1.07997 * 119.99989 * 359.97438 * 22 21 20 24 24 C 1.37882 * 119.99552 * 180.02562 * 22 21 20 25 25 N 1.31514 * 119.99947 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99586 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47520 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47129 * 119.99670 * 26 24 22 29 29 H 1.48495 * 109.47122 * 239.99796 * 26 24 22 30 30 H 1.09001 * 109.46879 * 300.00015 * 1 2 3 31 31 H 1.09001 * 109.47369 * 60.00063 * 1 2 3 32 32 H 1.09005 * 109.46985 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46879 * 239.99984 * 2 1 3 34 34 H 1.09001 * 109.47001 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.46886 * 300.00233 * 3 2 1 36 36 H 1.08992 * 109.47374 * 60.00051 * 3 2 1 37 37 H 1.09003 * 109.47031 * 274.90381 * 5 4 2 38 38 H 1.08995 * 109.47277 * 34.90705 * 5 4 2 39 39 H 1.09009 * 109.47182 * 154.90429 * 5 4 2 40 40 H 1.07997 * 120.04032 * 359.97438 * 9 8 6 41 41 H 1.08000 * 119.83941 * 179.75140 * 10 9 8 42 42 H 1.08001 * 119.80272 * 179.97438 * 11 10 9 43 43 H 1.07994 * 119.96768 * 180.02562 * 12 11 10 44 44 H 0.97005 * 119.99903 * 155.21250 * 14 13 12 45 45 H 1.00900 * 110.99371 * 296.04424 * 19 17 15 46 46 H 1.00890 * 110.99875 * 59.99643 * 19 17 15 47 47 H 1.08999 * 109.46601 * 54.99631 * 20 17 15 48 48 H 1.08995 * 109.47108 * 295.00388 * 20 17 15 49 49 H 1.09001 * 109.46884 * 60.00387 * 21 20 17 50 50 H 1.08995 * 109.47407 * 299.99710 * 21 20 17 51 51 H 0.96996 * 119.99373 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6645 -0.1901 2.5267 6 6 2.7932 -1.7865 1.0725 7 8 3.0081 -2.2581 -0.0274 8 6 3.3806 -2.4136 2.2716 9 6 4.1463 -1.6533 3.1586 10 6 4.6970 -2.2463 4.2739 11 6 4.4905 -3.5934 4.5242 12 6 3.7311 -4.3561 3.6601 13 6 3.1685 -3.7757 2.5311 14 7 2.4021 -4.5436 1.6574 15 6 2.5913 -5.8762 1.5884 16 8 3.4973 -6.3929 2.2073 17 6 1.6772 -6.7242 0.7421 18 1 1.4550 -6.2017 -0.1884 19 7 2.3348 -8.0028 0.4408 20 6 0.3758 -6.9869 1.5027 21 6 -0.6005 -7.7409 0.5977 22 6 -1.8825 -7.9990 1.3469 23 1 -1.9898 -7.6596 2.3665 24 6 -2.9179 -8.6694 0.7307 25 7 -2.7869 -9.0831 -0.5108 26 14 -4.5066 -8.9900 1.6594 27 1 -4.4014 -8.4271 3.0296 28 1 -5.6367 -8.3438 0.9449 29 1 -4.7451 -10.4534 1.7419 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9563 0.8899 37 1 2.3667 0.5904 2.8199 38 1 0.6547 0.2195 2.5041 39 1 1.7088 -1.0078 3.2462 40 1 4.3105 -0.6030 2.9680 41 1 5.2921 -1.6580 4.9568 42 1 4.9265 -4.0495 5.4007 43 1 3.5744 -5.4053 3.8622 44 1 1.7323 -4.1192 1.0986 45 1 3.1634 -7.8605 -0.1171 46 1 2.5512 -8.5064 1.2878 47 1 -0.0670 -6.0374 1.8038 48 1 0.5873 -7.5861 2.3883 49 1 -0.1576 -8.6903 0.2968 50 1 -0.8120 -7.1416 -0.2877 51 1 -3.5155 -9.5544 -0.9443 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848440740.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:02 Heat of formation + Delta-G solvation = -50.277051 kcal Electronic energy + Delta-G solvation = -31114.888893 eV Core-core repulsion = 27013.861937 eV Total energy + Delta-G solvation = -4101.026957 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.20085 -40.01472 -38.42665 -36.70472 -35.40323 -34.87525 -33.08175 -32.83040 -30.85769 -30.18400 -29.91136 -27.55968 -27.29015 -26.49535 -24.48593 -24.05876 -22.66130 -21.48956 -20.66339 -19.86940 -19.49519 -18.05550 -17.59005 -17.25070 -16.73650 -16.22469 -15.80824 -15.54904 -15.44765 -14.98086 -14.70865 -14.45144 -14.32695 -14.29796 -14.04915 -13.87032 -13.54242 -13.35371 -13.28634 -13.00236 -12.66482 -12.42255 -12.36303 -12.35365 -12.17855 -12.07389 -11.74859 -11.62092 -11.59180 -11.17214 -10.92951 -10.78386 -10.61998 -10.56660 -10.14369 -10.04256 -9.83535 -9.40900 -9.13918 -9.01456 -9.00106 -8.42024 -8.25337 -8.23404 -5.95146 -3.97509 0.76250 1.13143 2.39265 2.58995 2.66100 3.00092 3.32741 3.40361 3.43897 3.59864 4.17030 4.48055 4.54183 4.62223 4.67586 4.71225 4.76778 4.83909 4.93071 4.95091 5.08901 5.12595 5.22316 5.25743 5.26932 5.31866 5.37492 5.40372 5.47010 5.47924 5.60743 5.69056 5.74505 5.80751 5.92492 5.98923 6.03080 6.24645 6.25902 6.32082 6.38644 6.58354 6.78960 6.99461 7.03799 7.22850 7.43457 7.73855 7.75428 7.85132 7.93663 8.05179 8.11179 8.46114 9.10453 9.65709 11.15764 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009295 B = 0.002959 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.578030 B = 9460.883158 C =11094.576658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.128 3.872 3 C -0.160 4.160 4 N -0.606 5.606 5 C 0.074 3.926 6 C 0.562 3.438 7 O -0.528 6.528 8 C -0.171 4.171 9 C -0.066 4.066 10 C -0.151 4.151 11 C -0.077 4.077 12 C -0.139 4.139 13 C 0.206 3.794 14 N -0.663 5.663 15 C 0.487 3.513 16 O -0.529 6.529 17 C 0.080 3.920 18 H 0.102 0.898 19 N -0.804 5.804 20 C -0.095 4.095 21 C 0.031 3.969 22 C -0.523 4.523 23 H 0.052 0.948 24 C 0.058 3.942 25 N -0.891 5.891 26 Si 0.889 3.111 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.284 1.284 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.152 0.848 44 H 0.415 0.585 45 H 0.336 0.664 46 H 0.348 0.652 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.036 0.964 50 H 0.014 0.986 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.067 22.819 7.262 27.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.026 3.974 3 C -0.218 4.218 4 N -0.339 5.339 5 C -0.068 4.068 6 C 0.350 3.650 7 O -0.404 6.404 8 C -0.177 4.177 9 C -0.085 4.085 10 C -0.170 4.170 11 C -0.096 4.096 12 C -0.159 4.159 13 C 0.107 3.893 14 N -0.305 5.305 15 C 0.275 3.725 16 O -0.405 6.405 17 C -0.036 4.036 18 H 0.120 0.880 19 N -0.332 5.332 20 C -0.133 4.133 21 C -0.006 4.006 22 C -0.561 4.561 23 H 0.071 0.929 24 C -0.143 4.143 25 N -0.530 5.530 26 Si 0.717 3.283 27 H -0.199 1.199 28 H -0.211 1.211 29 H -0.210 1.210 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.170 0.830 44 H 0.252 0.748 45 H 0.148 0.852 46 H 0.163 0.837 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.055 0.945 50 H 0.032 0.968 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.977 21.809 6.521 26.202 hybrid contribution -0.390 0.651 0.821 1.118 sum 12.587 22.460 7.342 26.772 Atomic orbital electron populations 1.22158 0.94486 1.03040 1.02453 1.21130 0.94486 0.93026 0.88801 1.22129 1.01571 0.95560 1.02511 1.47891 1.50441 1.28160 1.07454 1.21863 1.01106 1.00308 0.83568 1.18343 0.78086 0.79810 0.88724 1.90827 1.60019 1.62354 1.27243 1.19522 1.06519 0.93669 0.98012 1.20961 0.95610 0.99081 0.92887 1.20993 1.02344 0.95284 0.98354 1.21235 0.96214 0.93620 0.98487 1.21462 0.99537 1.02279 0.92604 1.17781 0.92763 0.88964 0.89754 1.43754 1.38122 1.08228 1.40432 1.23133 0.85314 0.81781 0.82256 1.90606 1.32219 1.72528 1.45102 1.21911 0.94406 0.89062 0.98192 0.87998 1.58982 1.32372 1.17238 1.24573 1.21686 0.91666 1.00791 0.99173 1.19024 0.91758 0.96137 0.93677 1.21297 0.99297 1.36320 0.99178 0.92927 1.24995 0.98603 0.95837 0.94904 1.69985 1.32366 1.38996 1.11700 0.86593 0.83774 0.77946 0.79998 1.19862 1.21098 1.21030 0.92226 0.91167 0.91756 0.87923 0.92376 0.91238 0.92260 0.92483 0.90807 0.90400 0.85509 0.85536 0.85346 0.83026 0.74821 0.85153 0.83736 0.92856 0.92626 0.94536 0.96783 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.16 37.16 0.34 -0.90 16 2 C 0.13 1.10 3.25 -67.93 -0.22 0.88 16 3 C -0.16 -1.01 9.19 37.15 0.34 -0.67 16 4 N -0.61 -5.67 2.76 -175.17 -0.48 -6.15 16 5 C 0.07 0.49 8.36 59.84 0.50 0.99 16 6 C 0.56 7.04 6.33 -12.48 -0.08 6.96 16 7 O -0.53 -8.45 15.74 5.28 0.08 -8.36 16 8 C -0.17 -2.05 4.48 -104.81 -0.47 -2.52 16 9 C -0.07 -0.61 8.14 -39.20 -0.32 -0.93 16 10 C -0.15 -1.30 10.02 -39.62 -0.40 -1.69 16 11 C -0.08 -0.78 10.03 -39.54 -0.40 -1.17 16 12 C -0.14 -1.83 8.70 -39.43 -0.34 -2.17 16 13 C 0.21 2.84 6.43 -83.48 -0.54 2.30 16 14 N -0.66 -9.74 4.95 -9.69 -0.05 -9.79 16 15 C 0.49 7.94 6.86 -10.99 -0.08 7.86 16 16 O -0.53 -9.37 13.41 5.56 0.07 -9.29 16 17 C 0.08 1.38 3.15 -68.86 -0.22 1.16 16 18 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 19 N -0.80 -13.62 8.44 -5.65 -0.05 -13.67 16 20 C -0.09 -1.91 4.78 -26.73 -0.13 -2.04 16 21 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 22 C -0.52 -14.72 9.11 -34.43 -0.31 -15.03 16 23 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 24 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 25 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 26 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 27 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.06 0.38 6.69 -51.93 -0.35 0.03 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 1.10 6.91 -51.93 -0.36 0.74 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 37 H 0.06 0.28 7.85 -51.93 -0.41 -0.13 16 38 H 0.07 0.40 6.45 -51.93 -0.33 0.06 16 39 H 0.08 0.56 6.39 -51.92 -0.33 0.22 16 40 H 0.13 0.89 7.52 -52.49 -0.39 0.50 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.15 2.26 5.79 -52.49 -0.30 1.95 16 44 H 0.42 5.84 7.61 -40.82 -0.31 5.53 16 45 H 0.34 5.05 9.06 -39.29 -0.36 4.69 16 46 H 0.35 5.83 8.58 -39.30 -0.34 5.49 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.04 1.01 7.75 -51.93 -0.40 0.60 16 50 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 413.35 15.07 6.23 6.23 Total: -1.00 -33.98 413.35 -9.08 -43.06 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -8.05 Total: 12.22 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.55 Total: -4.75 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.16 Total: -55.76 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.16 Total: -17.65 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.98 -9.08 -43.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848440740.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.217 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds