Wall clock time and date at job start Wed Apr 1 2020 05:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47246 * 2 1 4 4 N 1.46500 * 109.47134 * 119.99991 * 2 1 3 5 5 C 1.46496 * 119.99995 * 299.99818 * 4 2 1 6 6 C 1.34782 * 120.00044 * 119.99616 * 4 2 1 7 7 O 1.21594 * 119.99725 * 354.72735 * 6 4 2 8 8 C 1.47515 * 120.00039 * 174.71900 * 6 4 2 9 9 C 1.39683 * 120.20350 * 305.74735 * 8 6 4 10 10 C 1.37799 * 119.92333 * 180.27225 * 9 8 6 11 11 C 1.38564 * 120.32963 * 359.72142 * 10 9 8 12 12 C 1.38028 * 120.40612 * 359.97438 * 11 10 9 13 13 C 1.38853 * 120.06539 * 0.03709 * 12 11 10 14 14 N 1.39293 * 120.16072 * 179.97438 * 13 12 11 15 15 C 1.34771 * 120.00130 * 335.20336 * 14 13 12 16 16 O 1.21279 * 120.00120 * 354.22492 * 15 14 13 17 17 C 1.50696 * 120.00075 * 174.22110 * 15 14 13 18 18 H 1.09001 * 109.46930 * 40.00215 * 17 15 14 19 19 N 1.46905 * 109.47476 * 160.00365 * 17 15 14 20 20 C 1.53007 * 109.47420 * 280.00209 * 17 15 14 21 21 C 1.52997 * 109.47044 * 174.99588 * 20 17 15 22 22 C 1.50709 * 109.46551 * 180.02562 * 21 20 17 23 23 H 1.07997 * 119.99989 * 359.97438 * 22 21 20 24 24 C 1.37882 * 119.99552 * 180.02562 * 22 21 20 25 25 N 1.31514 * 119.99947 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99586 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47520 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47129 * 119.99670 * 26 24 22 29 29 H 1.48495 * 109.47122 * 239.99796 * 26 24 22 30 30 H 1.09001 * 109.46879 * 300.00015 * 1 2 3 31 31 H 1.09001 * 109.47369 * 60.00063 * 1 2 3 32 32 H 1.09005 * 109.46985 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46879 * 239.99984 * 2 1 3 34 34 H 1.09001 * 109.47001 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.46886 * 300.00233 * 3 2 1 36 36 H 1.08992 * 109.47374 * 60.00051 * 3 2 1 37 37 H 1.09003 * 109.47031 * 274.90381 * 5 4 2 38 38 H 1.08995 * 109.47277 * 34.90705 * 5 4 2 39 39 H 1.09009 * 109.47182 * 154.90429 * 5 4 2 40 40 H 1.07997 * 120.04032 * 359.97438 * 9 8 6 41 41 H 1.08000 * 119.83941 * 179.75140 * 10 9 8 42 42 H 1.08001 * 119.80272 * 179.97438 * 11 10 9 43 43 H 1.07994 * 119.96768 * 180.02562 * 12 11 10 44 44 H 0.97005 * 119.99903 * 155.21250 * 14 13 12 45 45 H 1.00900 * 110.99371 * 296.04424 * 19 17 15 46 46 H 1.00890 * 110.99875 * 59.99643 * 19 17 15 47 47 H 1.08999 * 109.46601 * 54.99631 * 20 17 15 48 48 H 1.08995 * 109.47108 * 295.00388 * 20 17 15 49 49 H 1.09001 * 109.46884 * 60.00387 * 21 20 17 50 50 H 1.08995 * 109.47407 * 299.99710 * 21 20 17 51 51 H 0.96996 * 119.99373 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6645 -0.1901 2.5267 6 6 2.7932 -1.7865 1.0725 7 8 3.0081 -2.2581 -0.0274 8 6 3.3806 -2.4136 2.2716 9 6 4.1463 -1.6533 3.1586 10 6 4.6970 -2.2463 4.2739 11 6 4.4905 -3.5934 4.5242 12 6 3.7311 -4.3561 3.6601 13 6 3.1685 -3.7757 2.5311 14 7 2.4021 -4.5436 1.6574 15 6 2.5913 -5.8762 1.5884 16 8 3.4973 -6.3929 2.2073 17 6 1.6772 -6.7242 0.7421 18 1 1.4550 -6.2017 -0.1884 19 7 2.3348 -8.0028 0.4408 20 6 0.3758 -6.9869 1.5027 21 6 -0.6005 -7.7409 0.5977 22 6 -1.8825 -7.9990 1.3469 23 1 -1.9898 -7.6596 2.3665 24 6 -2.9179 -8.6694 0.7307 25 7 -2.7869 -9.0831 -0.5108 26 14 -4.5066 -8.9900 1.6594 27 1 -4.4014 -8.4271 3.0296 28 1 -5.6367 -8.3438 0.9449 29 1 -4.7451 -10.4534 1.7419 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9563 0.8899 37 1 2.3667 0.5904 2.8199 38 1 0.6547 0.2195 2.5041 39 1 1.7088 -1.0078 3.2462 40 1 4.3105 -0.6030 2.9680 41 1 5.2921 -1.6580 4.9568 42 1 4.9265 -4.0495 5.4007 43 1 3.5744 -5.4053 3.8622 44 1 1.7323 -4.1192 1.0986 45 1 3.1634 -7.8605 -0.1171 46 1 2.5512 -8.5064 1.2878 47 1 -0.0670 -6.0374 1.8038 48 1 0.5873 -7.5861 2.3883 49 1 -0.1576 -8.6903 0.2968 50 1 -0.8120 -7.1416 -0.2877 51 1 -3.5155 -9.5544 -0.9443 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848440740.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:01 Heat of formation + Delta-G solvation = -73.431348 kcal Electronic energy + Delta-G solvation = -31115.892939 eV Core-core repulsion = 27013.861937 eV Total energy + Delta-G solvation = -4102.031002 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.22688 -41.07147 -39.36236 -37.54635 -36.96487 -36.01514 -34.87346 -33.81612 -32.00953 -31.63076 -30.92891 -28.21543 -28.12016 -27.89530 -25.89594 -25.12015 -23.84953 -22.51954 -22.09165 -21.22313 -20.29265 -19.09276 -18.59492 -18.47982 -18.17680 -17.56269 -17.12171 -16.67729 -16.45495 -16.31361 -15.97572 -15.76631 -15.39317 -15.10095 -15.05447 -14.92151 -14.70365 -14.33111 -14.13797 -13.95627 -13.87209 -13.82559 -13.49897 -13.27192 -13.05960 -12.98500 -12.87803 -12.84304 -12.66664 -12.45671 -12.32046 -12.23684 -11.81256 -11.80142 -11.78053 -11.58151 -11.27217 -11.03207 -10.97471 -10.51994 -9.99400 -9.78436 -9.72389 -9.20361 -8.15629 -6.26465 -0.11755 0.25677 1.35727 1.40741 1.41502 1.48702 1.54116 1.84838 1.91214 2.43145 2.73518 3.17415 3.35278 3.40098 3.59418 3.82202 3.93339 3.98075 4.09744 4.12084 4.18386 4.20683 4.30775 4.35640 4.38945 4.40911 4.64554 4.67936 4.68717 4.72965 4.83504 4.86611 4.88678 4.93593 5.01423 5.07826 5.17577 5.24350 5.25912 5.32608 5.36999 5.49193 5.54333 5.55796 5.79065 5.91005 5.94693 5.95368 6.13859 6.25885 6.26820 6.43184 6.80231 6.91647 6.97994 7.41806 8.95974 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009295 B = 0.002959 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.578030 B = 9460.883158 C =11094.576658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.123 3.877 3 C -0.151 4.151 4 N -0.597 5.597 5 C 0.067 3.933 6 C 0.556 3.444 7 O -0.576 6.576 8 C -0.176 4.176 9 C -0.058 4.058 10 C -0.134 4.134 11 C -0.075 4.075 12 C -0.159 4.159 13 C 0.172 3.828 14 N -0.658 5.658 15 C 0.493 3.507 16 O -0.545 6.545 17 C 0.088 3.912 18 H 0.103 0.897 19 N -0.813 5.813 20 C -0.079 4.079 21 C 0.040 3.960 22 C -0.543 4.543 23 H 0.057 0.943 24 C 0.001 3.999 25 N -0.930 5.930 26 Si 0.962 3.038 27 H -0.263 1.263 28 H -0.277 1.277 29 H -0.280 1.280 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.156 0.844 41 H 0.167 0.833 42 H 0.152 0.848 43 H 0.128 0.872 44 H 0.415 0.585 45 H 0.347 0.653 46 H 0.349 0.651 47 H 0.062 0.938 48 H 0.051 0.949 49 H 0.009 0.991 50 H -0.010 1.010 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.316 25.901 9.801 30.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.020 3.980 3 C -0.208 4.208 4 N -0.329 5.329 5 C -0.074 4.074 6 C 0.345 3.655 7 O -0.457 6.457 8 C -0.182 4.182 9 C -0.077 4.077 10 C -0.152 4.152 11 C -0.093 4.093 12 C -0.180 4.180 13 C 0.075 3.925 14 N -0.301 5.301 15 C 0.280 3.720 16 O -0.422 6.422 17 C -0.028 4.028 18 H 0.121 0.879 19 N -0.342 5.342 20 C -0.118 4.118 21 C 0.002 3.998 22 C -0.581 4.581 23 H 0.075 0.925 24 C -0.197 4.197 25 N -0.570 5.570 26 Si 0.787 3.213 27 H -0.187 1.187 28 H -0.203 1.203 29 H -0.206 1.206 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.174 0.826 41 H 0.185 0.815 42 H 0.170 0.830 43 H 0.146 0.854 44 H 0.251 0.749 45 H 0.161 0.839 46 H 0.164 0.836 47 H 0.081 0.919 48 H 0.070 0.930 49 H 0.027 0.973 50 H 0.009 0.991 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.223 24.957 9.099 29.673 hybrid contribution -0.419 -0.197 0.058 0.467 sum 12.804 24.759 9.157 29.340 Atomic orbital electron populations 1.22127 0.93639 1.01935 1.03958 1.21218 0.95114 0.94105 0.87546 1.22059 1.01082 0.93719 1.03984 1.47999 1.48892 1.27043 1.08965 1.22118 1.02793 1.00803 0.81729 1.18547 0.78377 0.80360 0.88240 1.90800 1.62083 1.63923 1.28883 1.19618 1.07102 0.93094 0.98359 1.21337 0.94010 1.00223 0.92140 1.21437 1.00978 0.94661 0.98121 1.21555 0.95023 0.94346 0.98416 1.21401 1.01218 1.01711 0.93630 1.18018 0.94283 0.89862 0.90325 1.43585 1.38244 1.07688 1.40543 1.22661 0.85031 0.82386 0.81903 1.90599 1.32902 1.73026 1.45718 1.21640 0.93525 0.89607 0.98016 0.87949 1.58958 1.33094 1.17271 1.24898 1.21386 0.92024 1.00310 0.98032 1.18825 0.92321 0.95005 0.93608 1.21731 1.00450 1.36362 0.99595 0.92466 1.25935 1.02490 0.95492 0.95795 1.70121 1.33700 1.39761 1.13422 0.85447 0.79013 0.77876 0.78981 1.18654 1.20312 1.20575 0.90383 0.90006 0.94129 0.90897 0.93030 0.90182 0.90364 0.89782 0.89294 0.90897 0.82613 0.81539 0.82989 0.85394 0.74877 0.83929 0.83638 0.91905 0.93006 0.97284 0.99121 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.16 71.98 0.66 -1.59 16 2 C 0.12 2.02 3.25 44.99 0.15 2.17 16 3 C -0.15 -1.57 9.19 71.98 0.66 -0.91 16 4 N -0.60 -10.52 2.76 -826.37 -2.28 -12.80 16 5 C 0.07 0.69 8.36 127.77 1.07 1.75 16 6 C 0.56 13.95 6.33 86.69 0.55 14.50 16 7 O -0.58 -19.37 15.74 -4.01 -0.06 -19.43 16 8 C -0.18 -4.07 4.48 -19.99 -0.09 -4.16 16 9 C -0.06 -0.90 8.14 22.51 0.18 -0.71 16 10 C -0.13 -1.76 10.02 22.24 0.22 -1.54 16 11 C -0.07 -1.34 10.03 22.30 0.22 -1.12 16 12 C -0.16 -4.19 8.70 22.37 0.19 -4.00 16 13 C 0.17 4.81 6.43 38.60 0.25 5.06 16 14 N -0.66 -20.28 4.95 -302.95 -1.50 -21.78 16 15 C 0.49 16.79 6.86 87.66 0.60 17.40 16 16 O -0.54 -20.07 13.41 -3.03 -0.04 -20.11 16 17 C 0.09 3.18 3.15 44.17 0.14 3.32 16 18 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 19 N -0.81 -28.84 8.44 -171.79 -1.45 -30.29 16 20 C -0.08 -3.31 4.78 30.60 0.15 -3.16 16 21 C 0.04 2.11 4.86 29.85 0.15 2.26 16 22 C -0.54 -31.23 9.11 25.60 0.23 -31.00 16 23 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 24 C 0.00 0.04 5.46 84.66 0.46 0.50 16 25 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 26 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 27 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 28 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 29 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 30 H 0.08 0.81 6.69 -2.39 -0.02 0.79 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.07 1.65 6.91 -2.39 -0.02 1.64 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.08 0.53 7.67 -2.39 -0.02 0.52 16 37 H 0.08 0.45 7.85 -2.39 -0.02 0.43 16 38 H 0.09 0.67 6.45 -2.39 -0.02 0.65 16 39 H 0.07 0.86 6.39 -2.38 -0.02 0.85 16 40 H 0.16 1.48 7.52 -2.91 -0.02 1.46 16 41 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 42 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.13 3.96 5.79 -2.91 -0.02 3.94 16 44 H 0.41 12.46 7.61 -92.70 -0.71 11.75 16 45 H 0.35 10.88 9.06 -89.69 -0.81 10.07 16 46 H 0.35 12.21 8.58 -89.70 -0.77 11.44 16 47 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 48 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.01 0.51 7.75 -2.39 -0.02 0.49 16 50 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 51 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -77.18 413.35 1.45 -75.73 By element: Atomic # 1 Polarization: 41.62 SS G_CDS: -1.32 Total: 40.30 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 5.79 Total: -1.24 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -4.95 Total: -121.99 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.10 Total: -39.55 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -77.18 1.45 -75.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848440740.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.295 kcal (2) G-P(sol) polarization free energy of solvation -77.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds