Wall clock time and date at job start Wed Apr 1 2020 04:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47151 * 2 1 4 4 N 1.46898 * 109.47123 * 120.00731 * 2 1 3 5 5 C 1.46897 * 111.00160 * 155.00107 * 4 2 1 6 6 C 1.52998 * 109.46991 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47085 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.46968 * 180.02562 * 7 6 5 9 9 C 1.34781 * 119.99851 * 180.02562 * 8 7 6 10 10 O 1.21359 * 119.99673 * 0.02562 * 9 8 7 11 11 C 1.49354 * 120.00058 * 179.97438 * 9 8 7 12 12 O 1.21376 * 119.99810 * 0.02562 * 11 9 8 13 13 N 1.34781 * 120.00058 * 179.97438 * 11 9 8 14 14 C 1.39715 * 119.99781 * 185.27575 * 13 11 9 15 15 C 1.38934 * 120.07394 * 213.32338 * 14 13 11 16 16 C 1.38098 * 119.92297 * 180.02562 * 15 14 13 17 17 C 1.38295 * 120.07470 * 0.03068 * 16 15 14 18 18 C 1.50697 * 119.91952 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47160 * 90.00090 * 18 17 16 20 20 H 1.08000 * 119.99736 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99832 * 180.27507 * 19 18 17 22 22 N 1.31514 * 119.99931 * 179.72239 * 21 19 18 23 23 Si 1.86803 * 120.00056 * 359.72080 * 21 19 18 24 24 H 1.48493 * 109.47106 * 90.00492 * 23 21 19 25 25 H 1.48510 * 109.47144 * 210.00163 * 23 21 19 26 26 H 1.48498 * 109.47523 * 329.99986 * 23 21 19 27 27 C 1.38285 * 120.15328 * 0.24526 * 17 16 15 28 28 C 1.38095 * 120.07904 * 359.45568 * 27 17 16 29 29 H 1.08998 * 109.46909 * 299.99744 * 1 2 3 30 30 H 1.09002 * 109.47017 * 59.99926 * 1 2 3 31 31 H 1.08999 * 109.47332 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47230 * 240.00265 * 2 1 3 33 33 H 1.08996 * 109.46509 * 60.00455 * 3 2 1 34 34 H 1.09006 * 109.46985 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47524 * 299.99968 * 3 2 1 36 36 H 1.00906 * 110.99372 * 278.95084 * 4 2 1 37 37 H 1.09003 * 109.47355 * 59.99791 * 5 4 2 38 38 H 1.08998 * 109.47020 * 299.99183 * 5 4 2 39 39 H 1.09001 * 109.47379 * 59.99797 * 6 5 4 40 40 H 1.09001 * 109.47657 * 299.99736 * 6 5 4 41 41 H 1.09003 * 109.47133 * 60.00307 * 7 6 5 42 42 H 1.08998 * 109.47148 * 299.99757 * 7 6 5 43 43 H 0.96994 * 120.00678 * 359.97438 * 8 7 6 44 44 H 0.97001 * 119.99339 * 5.27650 * 13 11 9 45 45 H 1.07996 * 120.03554 * 0.02562 * 15 14 13 46 46 H 1.08001 * 119.95994 * 180.02562 * 16 15 14 47 47 H 1.08993 * 109.47609 * 329.99696 * 18 17 16 48 48 H 1.09000 * 109.46807 * 209.99744 * 18 17 16 49 49 H 0.97000 * 119.99774 * 179.97438 * 22 21 19 50 50 H 1.08002 * 119.96303 * 179.72578 * 27 17 16 51 51 H 1.08002 * 120.04594 * 180.24674 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 3.3670 -1.2355 0.9805 6 6 3.8421 -1.9473 2.2488 7 6 5.2452 -2.5134 2.0207 8 7 5.6999 -3.1955 3.2349 9 6 6.9165 -3.7747 3.2670 10 8 7.6354 -3.7307 2.2903 11 6 7.3803 -4.4696 4.5050 12 8 6.6614 -4.5131 5.4820 13 7 8.5967 -5.0492 4.5370 14 6 8.9869 -5.7929 5.6535 15 6 10.3188 -5.8087 6.0487 16 6 10.7012 -6.5453 7.1525 17 6 9.7602 -7.2672 7.8638 18 6 10.1815 -8.0703 9.0674 19 6 10.0877 -7.2114 10.3022 20 1 9.7567 -6.1865 10.2232 21 6 10.4306 -7.7324 11.5318 22 7 10.3540 -6.9813 12.6087 23 14 11.0037 -9.5050 11.6683 24 1 12.4792 -9.5617 11.5106 25 1 10.6271 -10.0460 12.9991 26 1 10.3606 -10.3167 10.6040 27 6 8.4347 -7.2583 7.4698 28 6 8.0442 -6.5190 6.3708 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 2.0020 -0.0817 2.0022 37 1 4.0523 -0.4220 0.7425 38 1 3.3430 -1.9445 0.1530 39 1 3.1569 -2.7608 2.4873 40 1 3.8662 -1.2382 3.0762 41 1 5.9307 -1.7002 1.7820 42 1 5.2208 -3.2227 1.1935 43 1 5.1258 -3.2297 4.0159 44 1 9.2010 -4.9499 3.7848 45 1 11.0541 -5.2455 5.4933 46 1 11.7363 -6.5576 7.4604 47 1 11.2094 -8.4083 8.9371 48 1 9.5258 -8.9343 9.1752 49 1 10.5948 -7.3479 13.4738 50 1 7.7032 -7.8267 8.0250 51 1 7.0082 -6.5092 6.0659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927791925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:24 Heat of formation + Delta-G solvation = -56.901400 kcal Electronic energy + Delta-G solvation = -28315.672744 eV Core-core repulsion = 24214.358534 eV Total energy + Delta-G solvation = -4101.314210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.07650 -39.46071 -38.27661 -38.02401 -36.16433 -35.06368 -33.28171 -32.94574 -30.91038 -30.45515 -30.06228 -27.67435 -27.56376 -25.93031 -24.07362 -22.51829 -22.48648 -22.20255 -21.27196 -20.62712 -20.03993 -18.82754 -17.43587 -16.79002 -16.76644 -16.55903 -16.33807 -15.89618 -15.48863 -15.40436 -15.02116 -14.70499 -14.37884 -14.20947 -14.10379 -13.90140 -13.71261 -13.27348 -13.06033 -12.98785 -12.89121 -12.74629 -12.48219 -12.43768 -12.12617 -11.97489 -11.91238 -11.75072 -11.68351 -11.53497 -11.46797 -11.32390 -10.84235 -10.54488 -10.34313 -10.03688 -9.78776 -9.67530 -9.64509 -9.32051 -8.99008 -8.58504 -8.42366 -7.52502 -6.07152 -4.06613 1.04776 1.89243 1.93738 2.14092 3.03407 3.28511 3.33914 3.36594 3.39099 3.59878 4.20233 4.28833 4.36134 4.40063 4.41369 4.49281 4.51744 4.63973 4.75233 4.91384 5.06851 5.08632 5.14170 5.23452 5.24804 5.30410 5.32488 5.37424 5.42357 5.54294 5.58488 5.59644 5.74997 5.76886 5.81778 5.85094 5.90992 6.04546 6.46278 6.47790 6.50604 6.66050 6.78744 6.82185 6.90707 6.99163 7.00227 7.22358 7.46377 7.54376 7.55837 7.69586 7.84331 8.49538 8.98668 9.52785 11.05812 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.001379 C = 0.001335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.967593 B =20295.954494 C =20970.282162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.077 3.923 3 C -0.184 4.184 4 N -0.686 5.686 5 C 0.062 3.938 6 C -0.133 4.133 7 C 0.119 3.881 8 N -0.700 5.700 9 C 0.512 3.488 10 O -0.520 6.520 11 C 0.501 3.499 12 O -0.498 6.498 13 N -0.636 5.636 14 C 0.100 3.900 15 C -0.135 4.135 16 C -0.105 4.105 17 C -0.033 4.033 18 C 0.014 3.986 19 C -0.514 4.514 20 H 0.074 0.926 21 C 0.070 3.930 22 N -0.899 5.899 23 Si 0.878 3.122 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.264 1.264 27 C -0.105 4.105 28 C -0.114 4.114 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.342 0.658 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.415 0.585 44 H 0.417 0.583 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.024 0.976 48 H 0.029 0.971 49 H 0.264 0.736 50 H 0.125 0.875 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.698 12.704 -27.690 33.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 C -0.243 4.243 4 N -0.317 5.317 5 C -0.068 4.068 6 C -0.171 4.171 7 C -0.004 4.004 8 N -0.354 5.354 9 C 0.293 3.707 10 O -0.396 6.396 11 C 0.282 3.718 12 O -0.372 6.372 13 N -0.282 5.282 14 C 0.008 3.992 15 C -0.155 4.155 16 C -0.123 4.123 17 C -0.034 4.034 18 C -0.023 4.023 19 C -0.552 4.552 20 H 0.092 0.908 21 C -0.132 4.132 22 N -0.538 5.538 23 Si 0.705 3.295 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.189 1.189 27 C -0.123 4.123 28 C -0.134 4.134 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.161 0.839 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.252 0.748 44 H 0.255 0.745 45 H 0.137 0.863 46 H 0.144 0.856 47 H 0.043 0.957 48 H 0.047 0.953 49 H 0.074 0.926 50 H 0.143 0.857 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.030 12.132 -27.701 33.770 hybrid contribution 0.921 0.190 0.306 0.989 sum -14.110 12.322 -27.395 33.187 Atomic orbital electron populations 1.21772 0.94181 1.02412 1.01494 1.21572 0.96018 0.92365 0.93288 1.22526 1.01283 0.97874 1.02649 1.60593 1.24040 1.41034 1.06045 1.21853 0.89085 0.98199 0.97638 1.21780 0.95205 1.01434 0.98667 1.21412 0.95229 0.96979 0.86819 1.45722 1.17210 1.54798 1.17693 1.20061 0.82548 0.79935 0.88192 1.90771 1.54439 1.58452 1.35913 1.20091 0.83063 0.80443 0.88233 1.90825 1.54117 1.57348 1.34953 1.43019 1.16383 1.49134 1.19631 1.17527 0.94071 0.96911 0.90680 1.20773 0.93892 1.02090 0.98742 1.20886 1.00099 0.97104 0.94252 1.20356 0.92687 0.95419 0.94893 1.18820 0.96574 0.95357 0.91566 1.20944 1.45351 0.99639 0.89286 0.90769 1.24996 0.94967 0.97591 0.95633 1.69904 1.48664 1.36409 0.98803 0.86808 0.79445 0.85641 0.77631 1.20175 1.21249 1.18903 1.20967 0.96120 0.99389 0.95862 1.20979 0.99001 0.96608 0.96796 0.92652 0.92472 0.91921 0.90464 0.92315 0.92736 0.91890 0.83948 0.94740 0.90528 0.89846 0.90937 0.90887 0.90662 0.74800 0.74547 0.86303 0.85649 0.95739 0.95298 0.92600 0.85749 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.62 9.52 37.16 0.35 -0.26 16 2 C 0.08 0.35 3.20 -67.71 -0.22 0.13 16 3 C -0.18 -0.72 9.16 37.16 0.34 -0.38 16 4 N -0.69 -3.42 6.25 -106.73 -0.67 -4.09 16 5 C 0.06 0.28 5.48 -3.83 -0.02 0.26 16 6 C -0.13 -0.62 5.59 -26.73 -0.15 -0.77 16 7 C 0.12 0.76 5.67 -4.04 -0.02 0.74 16 8 N -0.70 -5.95 5.55 -60.76 -0.34 -6.29 16 9 C 0.51 5.82 7.89 -11.63 -0.09 5.73 16 10 O -0.52 -6.73 16.48 5.49 0.09 -6.64 16 11 C 0.50 6.70 7.62 -11.63 -0.09 6.61 16 12 O -0.50 -7.87 14.16 5.47 0.08 -7.79 16 13 N -0.64 -8.40 5.32 -10.29 -0.05 -8.45 16 14 C 0.10 1.61 6.28 -83.75 -0.53 1.08 16 15 C -0.13 -2.13 9.97 -39.37 -0.39 -2.52 16 16 C -0.10 -1.92 9.69 -39.61 -0.38 -2.31 16 17 C -0.03 -0.69 5.07 -104.58 -0.53 -1.22 16 18 C 0.01 0.33 4.17 -29.03 -0.12 0.21 16 19 C -0.51 -14.57 9.65 -34.44 -0.33 -14.90 16 20 H 0.07 2.32 7.98 -52.49 -0.42 1.90 16 21 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 22 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 23 Si 0.88 21.23 27.46 -169.99 -4.67 16.56 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.26 -6.10 6.55 56.52 0.37 -5.73 16 27 C -0.10 -2.02 9.69 -39.62 -0.38 -2.40 16 28 C -0.11 -2.00 8.65 -39.38 -0.34 -2.34 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.36 7.80 -51.93 -0.40 -0.04 16 33 H 0.06 0.23 8.13 -51.93 -0.42 -0.20 16 34 H 0.05 0.23 7.45 -51.93 -0.39 -0.16 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.34 1.51 8.47 -39.29 -0.33 1.18 16 37 H 0.03 0.15 7.44 -51.93 -0.39 -0.24 16 38 H 0.08 0.36 8.06 -51.93 -0.42 -0.06 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.42 3.18 7.94 -40.82 -0.32 2.86 16 44 H 0.42 4.53 8.30 -40.82 -0.34 4.19 16 45 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 47 H 0.02 0.56 7.50 -51.93 -0.39 0.17 16 48 H 0.03 0.67 7.15 -51.93 -0.37 0.30 16 49 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 50 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 51 H 0.13 2.11 6.42 -52.49 -0.34 1.77 16 LS Contribution 422.97 15.07 6.37 6.37 Total: -1.00 -33.19 422.97 -9.76 -42.95 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -8.35 Total: 4.59 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -3.00 Total: -10.43 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -0.29 Total: -45.62 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.17 Total: -14.43 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.19 -9.76 -42.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927791925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.948 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds