Wall clock time and date at job start Wed Apr 1 2020 04:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47151 * 2 1 4 4 N 1.46898 * 109.47123 * 120.00731 * 2 1 3 5 5 C 1.46897 * 111.00160 * 155.00107 * 4 2 1 6 6 C 1.52998 * 109.46991 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47085 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.46968 * 180.02562 * 7 6 5 9 9 C 1.34781 * 119.99851 * 180.02562 * 8 7 6 10 10 O 1.21359 * 119.99673 * 0.02562 * 9 8 7 11 11 C 1.49354 * 120.00058 * 179.97438 * 9 8 7 12 12 O 1.21376 * 119.99810 * 0.02562 * 11 9 8 13 13 N 1.34781 * 120.00058 * 179.97438 * 11 9 8 14 14 C 1.39715 * 119.99781 * 185.27575 * 13 11 9 15 15 C 1.38934 * 120.07394 * 213.32338 * 14 13 11 16 16 C 1.38098 * 119.92297 * 180.02562 * 15 14 13 17 17 C 1.38295 * 120.07470 * 0.03068 * 16 15 14 18 18 C 1.50697 * 119.91952 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47160 * 90.00090 * 18 17 16 20 20 H 1.08000 * 119.99736 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99832 * 180.27507 * 19 18 17 22 22 N 1.31514 * 119.99931 * 179.72239 * 21 19 18 23 23 Si 1.86803 * 120.00056 * 359.72080 * 21 19 18 24 24 H 1.48493 * 109.47106 * 90.00492 * 23 21 19 25 25 H 1.48510 * 109.47144 * 210.00163 * 23 21 19 26 26 H 1.48498 * 109.47523 * 329.99986 * 23 21 19 27 27 C 1.38285 * 120.15328 * 0.24526 * 17 16 15 28 28 C 1.38095 * 120.07904 * 359.45568 * 27 17 16 29 29 H 1.08998 * 109.46909 * 299.99744 * 1 2 3 30 30 H 1.09002 * 109.47017 * 59.99926 * 1 2 3 31 31 H 1.08999 * 109.47332 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47230 * 240.00265 * 2 1 3 33 33 H 1.08996 * 109.46509 * 60.00455 * 3 2 1 34 34 H 1.09006 * 109.46985 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47524 * 299.99968 * 3 2 1 36 36 H 1.00906 * 110.99372 * 278.95084 * 4 2 1 37 37 H 1.09003 * 109.47355 * 59.99791 * 5 4 2 38 38 H 1.08998 * 109.47020 * 299.99183 * 5 4 2 39 39 H 1.09001 * 109.47379 * 59.99797 * 6 5 4 40 40 H 1.09001 * 109.47657 * 299.99736 * 6 5 4 41 41 H 1.09003 * 109.47133 * 60.00307 * 7 6 5 42 42 H 1.08998 * 109.47148 * 299.99757 * 7 6 5 43 43 H 0.96994 * 120.00678 * 359.97438 * 8 7 6 44 44 H 0.97001 * 119.99339 * 5.27650 * 13 11 9 45 45 H 1.07996 * 120.03554 * 0.02562 * 15 14 13 46 46 H 1.08001 * 119.95994 * 180.02562 * 16 15 14 47 47 H 1.08993 * 109.47609 * 329.99696 * 18 17 16 48 48 H 1.09000 * 109.46807 * 209.99744 * 18 17 16 49 49 H 0.97000 * 119.99774 * 179.97438 * 22 21 19 50 50 H 1.08002 * 119.96303 * 179.72578 * 27 17 16 51 51 H 1.08002 * 120.04594 * 180.24674 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 3.3670 -1.2355 0.9805 6 6 3.8421 -1.9473 2.2488 7 6 5.2452 -2.5134 2.0207 8 7 5.6999 -3.1955 3.2349 9 6 6.9165 -3.7747 3.2670 10 8 7.6354 -3.7307 2.2903 11 6 7.3803 -4.4696 4.5050 12 8 6.6614 -4.5131 5.4820 13 7 8.5967 -5.0492 4.5370 14 6 8.9869 -5.7929 5.6535 15 6 10.3188 -5.8087 6.0487 16 6 10.7012 -6.5453 7.1525 17 6 9.7602 -7.2672 7.8638 18 6 10.1815 -8.0703 9.0674 19 6 10.0877 -7.2114 10.3022 20 1 9.7567 -6.1865 10.2232 21 6 10.4306 -7.7324 11.5318 22 7 10.3540 -6.9813 12.6087 23 14 11.0037 -9.5050 11.6683 24 1 12.4792 -9.5617 11.5106 25 1 10.6271 -10.0460 12.9991 26 1 10.3606 -10.3167 10.6040 27 6 8.4347 -7.2583 7.4698 28 6 8.0442 -6.5190 6.3708 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 2.0020 -0.0817 2.0022 37 1 4.0523 -0.4220 0.7425 38 1 3.3430 -1.9445 0.1530 39 1 3.1569 -2.7608 2.4873 40 1 3.8662 -1.2382 3.0762 41 1 5.9307 -1.7002 1.7820 42 1 5.2208 -3.2227 1.1935 43 1 5.1258 -3.2297 4.0159 44 1 9.2010 -4.9499 3.7848 45 1 11.0541 -5.2455 5.4933 46 1 11.7363 -6.5576 7.4604 47 1 11.2094 -8.4083 8.9371 48 1 9.5258 -8.9343 9.1752 49 1 10.5948 -7.3479 13.4738 50 1 7.7032 -7.8267 8.0250 51 1 7.0082 -6.5092 6.0659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927791925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:23 Heat of formation + Delta-G solvation = -80.385594 kcal Electronic energy + Delta-G solvation = -28316.691095 eV Core-core repulsion = 24214.358534 eV Total energy + Delta-G solvation = -4102.332561 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.14132 -40.55323 -39.34910 -38.60604 -36.97267 -36.23590 -34.93793 -33.78989 -32.63712 -31.84369 -30.58755 -29.13300 -27.99660 -26.86845 -25.18346 -24.00424 -23.77554 -22.68066 -21.95429 -21.65572 -21.22894 -19.81916 -18.95408 -18.54891 -17.69306 -17.33889 -17.06889 -16.71051 -16.54734 -16.22533 -15.96957 -15.95119 -15.62737 -15.26633 -15.11032 -14.81934 -14.46744 -14.38505 -14.33408 -14.27518 -13.94296 -13.54464 -13.46651 -13.35670 -13.30598 -13.07610 -12.92360 -12.50286 -12.46686 -12.34272 -12.24353 -12.07694 -11.93457 -11.90612 -11.76507 -11.68416 -11.57714 -11.19355 -10.79255 -10.75388 -10.37302 -9.81458 -9.35005 -8.94763 -8.28225 -6.33780 -0.04760 0.52510 0.63618 1.16485 1.38492 1.40667 1.52525 2.00791 2.37181 2.47784 2.92187 3.06360 3.14866 3.29878 3.92116 3.99626 4.01296 4.05411 4.08781 4.13529 4.26362 4.28664 4.40604 4.50831 4.51653 4.55892 4.61338 4.62998 4.72449 4.76291 4.91365 4.93040 5.01245 5.02211 5.07977 5.08380 5.14558 5.21067 5.24343 5.26867 5.29040 5.32234 5.41691 5.51604 5.58548 5.82547 5.97958 6.09254 6.11093 6.23340 6.28942 6.47394 6.62728 6.72994 6.80953 7.29901 8.88475 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.001379 C = 0.001335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.967593 B =20295.954494 C =20970.282162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.077 3.923 3 C -0.180 4.180 4 N -0.695 5.695 5 C 0.065 3.935 6 C -0.121 4.121 7 C 0.120 3.880 8 N -0.687 5.687 9 C 0.519 3.481 10 O -0.536 6.536 11 C 0.502 3.498 12 O -0.524 6.524 13 N -0.628 5.628 14 C 0.110 3.890 15 C -0.125 4.125 16 C -0.111 4.111 17 C -0.068 4.068 18 C 0.021 3.979 19 C -0.522 4.522 20 H 0.025 0.975 21 C 0.008 3.992 22 N -0.951 5.951 23 Si 0.952 3.048 24 H -0.263 1.263 25 H -0.284 1.284 26 H -0.245 1.245 27 C -0.116 4.116 28 C -0.121 4.121 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.345 0.655 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.420 0.580 44 H 0.431 0.569 45 H 0.157 0.843 46 H 0.134 0.866 47 H 0.036 0.964 48 H 0.031 0.969 49 H 0.267 0.733 50 H 0.121 0.879 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.482 12.551 -29.999 35.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 C -0.239 4.239 4 N -0.326 5.326 5 C -0.065 4.065 6 C -0.159 4.159 7 C -0.003 4.003 8 N -0.340 5.340 9 C 0.298 3.702 10 O -0.413 6.413 11 C 0.284 3.716 12 O -0.400 6.400 13 N -0.275 5.275 14 C 0.017 3.983 15 C -0.145 4.145 16 C -0.130 4.130 17 C -0.068 4.068 18 C -0.016 4.016 19 C -0.560 4.560 20 H 0.044 0.956 21 C -0.189 4.189 22 N -0.591 5.591 23 Si 0.775 3.225 24 H -0.188 1.188 25 H -0.210 1.210 26 H -0.168 1.168 27 C -0.135 4.135 28 C -0.141 4.141 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.164 0.836 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.258 0.742 44 H 0.271 0.729 45 H 0.175 0.825 46 H 0.151 0.849 47 H 0.054 0.946 48 H 0.049 0.951 49 H 0.076 0.924 50 H 0.139 0.861 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.834 12.000 -30.057 35.602 hybrid contribution 0.747 0.404 0.937 1.264 sum -14.088 12.404 -29.120 34.646 Atomic orbital electron populations 1.21753 0.94169 1.01889 1.01836 1.21581 0.96013 0.92689 0.93024 1.22474 1.01076 0.97441 1.02881 1.60594 1.24246 1.41372 1.06388 1.21811 0.89040 0.98243 0.97386 1.21669 0.93951 1.01348 0.98971 1.21552 0.96111 0.96880 0.85792 1.45774 1.16139 1.53490 1.18568 1.19632 0.83283 0.80189 0.87053 1.90774 1.55104 1.59431 1.36011 1.20514 0.82590 0.79901 0.88613 1.90821 1.54769 1.58302 1.36096 1.42962 1.16791 1.48520 1.19224 1.17625 0.94000 0.95901 0.90791 1.21067 0.94530 1.01075 0.97797 1.21048 1.00125 0.96959 0.94830 1.20243 0.93927 0.97418 0.95231 1.18662 0.97255 0.94970 0.90762 1.21191 1.44714 0.98301 0.91786 0.95626 1.25995 0.95023 1.02904 0.94968 1.70069 1.50391 1.39020 0.99624 0.85635 0.79559 0.79246 0.78103 1.18756 1.21030 1.16792 1.20993 0.95694 1.00111 0.96695 1.21041 0.99666 0.96726 0.96618 0.92788 0.91671 0.92835 0.90683 0.92253 0.92943 0.91490 0.83629 0.94343 0.90683 0.90120 0.90370 0.90612 0.90523 0.74216 0.72891 0.82503 0.84856 0.94609 0.95050 0.92394 0.86104 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.52 71.98 0.69 -0.41 16 2 C 0.08 0.61 3.20 44.92 0.14 0.75 16 3 C -0.18 -1.18 9.16 71.98 0.66 -0.52 16 4 N -0.69 -6.08 6.25 -491.57 -3.07 -9.15 16 5 C 0.06 0.49 5.48 86.30 0.47 0.97 16 6 C -0.12 -0.92 5.59 30.60 0.17 -0.75 16 7 C 0.12 1.30 5.67 86.38 0.49 1.79 16 8 N -0.69 -10.46 5.55 -464.49 -2.58 -13.03 16 9 C 0.52 10.85 7.89 87.24 0.69 11.54 16 10 O -0.54 -12.77 16.48 -3.27 -0.05 -12.83 16 11 C 0.50 12.65 7.62 87.24 0.67 13.31 16 12 O -0.52 -16.06 14.16 -3.33 -0.05 -16.11 16 13 N -0.63 -15.26 5.32 -304.83 -1.62 -16.88 16 14 C 0.11 3.34 6.28 38.22 0.24 3.58 16 15 C -0.12 -3.67 9.97 22.40 0.22 -3.44 16 16 C -0.11 -3.97 9.69 22.25 0.22 -3.75 16 17 C -0.07 -2.82 5.07 -19.84 -0.10 -2.92 16 18 C 0.02 0.98 4.17 29.10 0.12 1.10 16 19 C -0.52 -30.50 9.65 25.60 0.25 -30.25 16 20 H 0.03 1.68 7.98 -2.91 -0.02 1.66 16 21 C 0.01 0.47 5.47 84.65 0.46 0.93 16 22 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 23 Si 0.95 43.74 27.46 68.60 1.88 45.62 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.24 -10.37 6.55 99.48 0.65 -9.72 16 27 C -0.12 -4.54 9.69 22.25 0.22 -4.32 16 28 C -0.12 -4.17 8.65 22.40 0.19 -3.98 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.63 7.80 -2.38 -0.02 0.61 16 33 H 0.06 0.38 8.13 -2.39 -0.02 0.36 16 34 H 0.05 0.37 7.45 -2.38 -0.02 0.35 16 35 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.35 2.61 8.47 -89.69 -0.76 1.85 16 37 H 0.04 0.27 7.44 -2.39 -0.02 0.25 16 38 H 0.07 0.60 8.06 -2.39 -0.02 0.59 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.08 0.53 8.14 -2.39 -0.02 0.52 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.42 5.77 7.94 -92.71 -0.74 5.03 16 44 H 0.43 8.18 8.30 -92.71 -0.77 7.41 16 45 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 46 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 47 H 0.04 1.59 7.50 -2.39 -0.02 1.57 16 48 H 0.03 1.45 7.15 -2.39 -0.02 1.43 16 49 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 50 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 51 H 0.13 4.32 6.42 -2.91 -0.02 4.30 16 Total: -1.00 -73.16 422.97 -0.76 -73.92 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -1.37 Total: 24.60 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 5.79 Total: -16.37 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -6.97 Total: -98.83 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.10 Total: -28.94 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.62 kcal Total: -73.16 -0.76 -73.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927791925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.461 kcal (2) G-P(sol) polarization free energy of solvation -73.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds