Wall clock time and date at job start Wed Apr 1 2020 04:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 111.00178 * 2 1 4 4 C 1.52997 * 109.47389 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47460 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00069 * 83.63218 * 5 4 3 7 7 O 1.21356 * 119.99734 * 174.99531 * 6 5 4 8 8 C 1.49353 * 120.00045 * 354.99144 * 6 5 4 9 9 O 1.21378 * 119.99700 * 2.20446 * 8 6 5 10 10 N 1.34773 * 120.00299 * 182.20707 * 8 6 5 11 11 C 1.39725 * 120.00145 * 185.15276 * 10 8 6 12 12 C 1.38932 * 120.07163 * 208.34286 * 11 10 8 13 13 C 1.38098 * 119.91835 * 180.02562 * 12 11 10 14 14 C 1.38293 * 120.07890 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.92626 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47102 * 90.00198 * 15 14 13 17 17 H 1.08002 * 119.99705 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99986 * 180.27506 * 16 15 14 19 19 N 1.31512 * 119.99814 * 359.72674 * 18 16 15 20 20 Si 1.86802 * 119.99959 * 179.73043 * 18 16 15 21 21 H 1.48502 * 109.47356 * 59.99666 * 20 18 16 22 22 H 1.48494 * 109.47062 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47018 * 300.00176 * 20 18 16 24 24 C 1.38294 * 120.14816 * 0.26281 * 14 13 12 25 25 C 1.38098 * 120.07809 * 359.44161 * 24 14 13 26 26 C 1.46504 * 119.99719 * 263.63375 * 5 4 3 27 27 C 1.52997 * 109.47012 * 304.44577 * 26 5 4 28 28 C 1.52997 * 109.47248 * 64.45090 * 26 5 4 29 29 H 1.09010 * 109.47004 * 300.00080 * 1 2 3 30 30 H 1.09002 * 109.47513 * 59.99479 * 1 2 3 31 31 H 1.08993 * 109.47171 * 179.97438 * 1 2 3 32 32 H 1.00894 * 110.99899 * 123.95447 * 2 1 3 33 33 H 1.08999 * 109.46740 * 60.00095 * 3 2 1 34 34 H 1.08999 * 109.47173 * 300.00396 * 3 2 1 35 35 H 1.09006 * 109.47031 * 59.99922 * 4 3 2 36 36 H 1.08998 * 109.46897 * 300.00711 * 4 3 2 37 37 H 0.97004 * 119.99663 * 5.15466 * 10 8 6 38 38 H 1.07998 * 120.04599 * 0.02562 * 12 11 10 39 39 H 1.07999 * 119.96386 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.47298 * 330.00403 * 15 14 13 41 41 H 1.08996 * 109.47044 * 210.00760 * 15 14 13 42 42 H 0.97004 * 119.99644 * 179.97438 * 19 18 16 43 43 H 1.08009 * 119.95865 * 179.72197 * 24 14 13 44 44 H 1.08001 * 120.03608 * 180.25184 * 25 24 14 45 45 H 1.09000 * 109.46716 * 184.45032 * 26 5 4 46 46 H 1.09000 * 109.47008 * 60.00634 * 27 26 5 47 47 H 1.08997 * 109.46888 * 180.02562 * 27 26 5 48 48 H 1.09000 * 109.47352 * 300.00616 * 27 26 5 49 49 H 1.09004 * 109.47031 * 59.99741 * 28 26 5 50 50 H 1.08997 * 109.47198 * 179.97438 * 28 26 5 51 51 H 1.09000 * 109.47215 * 299.99637 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 7 4.0500 2.6983 0.0000 6 6 4.1711 3.3731 1.1603 7 8 4.6897 4.4702 1.1729 8 6 3.6671 2.7707 2.4307 9 8 3.1847 1.6569 2.4246 10 7 3.7478 3.4638 3.5837 11 6 3.3765 2.8614 4.7885 12 6 2.8917 3.6369 5.8342 13 6 2.5262 3.0382 7.0238 14 6 2.6428 1.6685 7.1749 15 6 2.2434 1.0189 8.4747 16 6 0.7871 0.6356 8.4181 17 1 0.2087 0.8414 7.5296 18 6 0.1918 0.0268 9.5026 19 7 0.8963 -0.2243 10.5843 20 14 -1.6153 -0.4415 9.4352 21 1 -1.8379 -1.3970 8.3204 22 1 -2.0104 -1.0762 10.7182 23 1 -2.4345 0.7771 9.2134 24 6 3.1306 0.8944 6.1380 25 6 3.4923 1.4857 4.9436 26 6 4.4433 3.3324 -1.2608 27 6 5.4728 2.4537 -1.9742 28 6 3.2117 3.5017 -2.1526 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8306 -0.5261 0.7813 33 1 1.6460 1.8947 0.8900 34 1 1.6460 1.8948 -0.8899 35 1 3.8741 0.8074 -0.8909 36 1 3.8747 0.8071 0.8890 37 1 4.0637 4.3810 3.5771 38 1 2.8007 4.7067 5.7171 39 1 2.1488 3.6403 7.8371 40 1 2.4032 1.7187 9.2950 41 1 2.8481 0.1264 8.6357 42 1 0.4773 -0.6523 11.3474 43 1 3.2246 -0.1746 6.2609 44 1 3.8693 0.8800 4.1329 45 1 4.8801 4.3097 -1.0551 46 1 5.0360 1.4764 -2.1798 47 1 5.7658 2.9257 -2.9119 48 1 6.3502 2.3331 -1.3388 49 1 2.4783 4.1277 -1.6442 50 1 3.5043 3.9739 -3.0904 51 1 2.7750 2.5244 -2.3583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927866652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:09 Heat of formation + Delta-G solvation = -33.666916 kcal Electronic energy + Delta-G solvation = -30834.365560 eV Core-core repulsion = 26734.058873 eV Total energy + Delta-G solvation = -4100.306687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.39886 -39.64142 -38.09337 -37.59350 -35.81006 -35.09785 -33.06937 -32.63168 -30.62290 -30.39908 -29.37911 -27.70234 -27.15942 -25.27179 -24.84624 -23.16879 -22.54042 -22.48921 -21.30687 -20.21964 -19.72407 -18.24791 -17.58062 -16.97881 -16.49384 -16.33032 -15.98284 -15.59698 -15.12904 -14.92161 -14.75191 -14.56401 -14.31127 -14.21442 -13.99991 -13.89619 -13.37546 -13.30789 -13.10661 -12.92921 -12.75665 -12.62991 -12.55945 -12.21079 -12.12181 -11.93372 -11.69043 -11.61547 -11.47002 -11.29923 -11.23004 -11.16438 -10.81838 -10.62770 -10.41945 -10.11083 -9.66241 -9.41920 -9.32111 -9.17901 -8.64164 -8.44524 -8.38596 -7.47659 -6.06144 -4.10322 1.02670 1.94054 1.97065 2.08700 3.00934 3.15641 3.30566 3.34751 3.38103 4.00378 4.28452 4.34022 4.43587 4.50613 4.61436 4.70625 4.83149 4.93881 5.14783 5.17692 5.20815 5.27445 5.27833 5.33759 5.38652 5.43762 5.46222 5.46843 5.57509 5.66650 5.73369 5.76040 5.80679 5.88535 5.95173 5.99157 6.07785 6.10787 6.54141 6.56049 6.69069 6.74045 6.80808 7.07967 7.10928 7.15765 7.21364 7.44897 7.50499 7.61440 7.80527 7.84768 7.89351 8.29198 8.94682 9.53593 11.03398 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.002494 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.793553 B =11226.411577 C =12636.420884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.690 5.690 3 C 0.046 3.954 4 C 0.100 3.900 5 N -0.576 5.576 6 C 0.511 3.489 7 O -0.522 6.522 8 C 0.499 3.501 9 O -0.494 6.494 10 N -0.632 5.632 11 C 0.098 3.902 12 C -0.139 4.139 13 C -0.107 4.107 14 C -0.038 4.038 15 C 0.048 3.952 16 C -0.512 4.512 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.107 4.107 25 C -0.119 4.119 26 C 0.128 3.872 27 C -0.162 4.162 28 C -0.164 4.164 29 H 0.024 0.976 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.348 0.652 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.417 0.583 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.263 0.737 43 H 0.123 0.877 44 H 0.130 0.870 45 H 0.103 0.897 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.058 0.942 50 H 0.070 0.930 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.190 6.315 -25.149 26.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.321 5.321 3 C -0.084 4.084 4 C -0.022 4.022 5 N -0.310 5.310 6 C 0.293 3.707 7 O -0.398 6.398 8 C 0.281 3.719 9 O -0.370 6.370 10 N -0.277 5.277 11 C 0.006 3.994 12 C -0.159 4.159 13 C -0.125 4.125 14 C -0.039 4.039 15 C 0.011 3.989 16 C -0.551 4.551 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.723 3.277 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.126 4.126 25 C -0.139 4.139 26 C 0.026 3.974 27 C -0.220 4.220 28 C -0.222 4.222 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.166 0.834 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.253 0.747 38 H 0.135 0.865 39 H 0.142 0.858 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.141 0.859 44 H 0.148 0.852 45 H 0.121 0.879 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.089 0.911 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.186 5.968 -25.710 27.355 hybrid contribution -1.232 0.477 0.932 1.617 sum 5.954 6.445 -24.779 26.286 Atomic orbital electron populations 1.22156 0.87648 1.01957 1.00332 1.60400 1.07940 1.13591 1.50211 1.22392 0.94576 0.90570 1.00877 1.21963 0.93817 0.81352 1.05086 1.47861 1.61577 1.15840 1.05700 1.20127 0.80105 0.85439 0.85012 1.90749 1.42774 1.20066 1.86220 1.20063 0.80570 0.86428 0.84829 1.90708 1.41933 1.18772 1.85545 1.43057 1.62675 1.17226 1.04779 1.17539 1.03888 0.92953 0.85069 1.20746 1.02309 0.98975 0.93852 1.20906 0.99969 0.95044 0.96604 1.20772 0.92095 0.93044 0.97981 1.18359 0.96628 0.95795 0.88126 1.21012 0.94344 1.39260 1.00447 0.92551 1.25004 0.98181 0.95722 0.95370 1.69944 1.36274 1.42555 1.04499 0.86602 0.85032 0.78826 0.77266 1.20145 1.21205 1.20196 1.21014 0.99336 1.00054 0.92203 1.21088 1.01656 0.92825 0.98290 1.21237 0.95536 0.98208 0.82449 1.22157 0.98772 1.00372 1.00701 1.22242 0.97659 1.02729 0.99576 0.95707 0.92101 0.91291 0.83426 0.94114 0.91388 0.89552 0.87469 0.74660 0.86546 0.85793 0.95239 0.95233 0.92758 0.85915 0.85225 0.87853 0.91693 0.91000 0.91996 0.92261 0.91089 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.70 60.06 0.64 0.92 16 2 N -0.69 -6.93 6.86 -121.13 -0.83 -7.76 16 3 C 0.05 0.46 5.23 -3.82 -0.02 0.44 16 4 C 0.10 0.91 4.58 -4.05 -0.02 0.90 16 5 N -0.58 -5.49 2.39 -166.65 -0.40 -5.88 16 6 C 0.51 6.05 7.68 -11.63 -0.09 5.96 16 7 O -0.52 -6.97 15.83 5.49 0.09 -6.88 16 8 C 0.50 6.51 7.30 -11.63 -0.08 6.42 16 9 O -0.49 -6.95 8.84 5.47 0.05 -6.90 16 10 N -0.63 -8.31 5.34 -10.30 -0.05 -8.36 16 11 C 0.10 1.55 6.37 -83.75 -0.53 1.01 16 12 C -0.14 -2.21 9.95 -39.38 -0.39 -2.60 16 13 C -0.11 -1.99 9.69 -39.61 -0.38 -2.38 16 14 C -0.04 -0.81 5.07 -104.58 -0.53 -1.34 16 15 C 0.05 1.20 5.10 -29.04 -0.15 1.06 16 16 C -0.51 -14.20 9.09 -34.44 -0.31 -14.52 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 20 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.11 -2.08 9.69 -39.61 -0.38 -2.46 16 25 C -0.12 -2.04 8.68 -39.38 -0.34 -2.39 16 26 C 0.13 0.98 3.25 -67.93 -0.22 0.76 16 27 C -0.16 -0.96 9.10 37.16 0.34 -0.62 16 28 C -0.16 -1.05 8.50 37.16 0.32 -0.73 16 29 H 0.02 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.35 3.61 8.82 -39.29 -0.35 3.27 16 33 H 0.04 0.51 6.46 -51.93 -0.34 0.17 16 34 H 0.07 0.64 6.09 -51.93 -0.32 0.32 16 35 H 0.09 0.67 6.21 -51.93 -0.32 0.35 16 36 H 0.11 1.13 5.76 -51.93 -0.30 0.83 16 37 H 0.42 4.65 8.28 -40.82 -0.34 4.32 16 38 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 39 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 40 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 41 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.12 2.32 8.06 -52.48 -0.42 1.89 16 44 H 0.13 2.12 6.04 -52.49 -0.32 1.80 16 45 H 0.10 0.91 6.91 -51.93 -0.36 0.55 16 46 H 0.06 0.36 6.51 -51.93 -0.34 0.03 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.07 0.42 6.53 -51.93 -0.34 0.08 16 LS Contribution 409.83 15.07 6.18 6.18 Total: -1.00 -30.58 409.83 -9.44 -40.02 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.92 Total: 6.61 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -2.26 Total: -8.02 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.55 Total: -47.44 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.14 Total: -13.78 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.58 -9.44 -40.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927866652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.350 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds