Wall clock time and date at job start Wed Apr 1 2020 04:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 111.00178 * 2 1 4 4 C 1.52997 * 109.47389 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47460 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00069 * 83.63218 * 5 4 3 7 7 O 1.21356 * 119.99734 * 174.99531 * 6 5 4 8 8 C 1.49353 * 120.00045 * 354.99144 * 6 5 4 9 9 O 1.21378 * 119.99700 * 2.20446 * 8 6 5 10 10 N 1.34773 * 120.00299 * 182.20707 * 8 6 5 11 11 C 1.39725 * 120.00145 * 185.15276 * 10 8 6 12 12 C 1.38932 * 120.07163 * 208.34286 * 11 10 8 13 13 C 1.38098 * 119.91835 * 180.02562 * 12 11 10 14 14 C 1.38293 * 120.07890 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.92626 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47102 * 90.00198 * 15 14 13 17 17 H 1.08002 * 119.99705 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99986 * 180.27506 * 16 15 14 19 19 N 1.31512 * 119.99814 * 359.72674 * 18 16 15 20 20 Si 1.86802 * 119.99959 * 179.73043 * 18 16 15 21 21 H 1.48502 * 109.47356 * 59.99666 * 20 18 16 22 22 H 1.48494 * 109.47062 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47018 * 300.00176 * 20 18 16 24 24 C 1.38294 * 120.14816 * 0.26281 * 14 13 12 25 25 C 1.38098 * 120.07809 * 359.44161 * 24 14 13 26 26 C 1.46504 * 119.99719 * 263.63375 * 5 4 3 27 27 C 1.52997 * 109.47012 * 304.44577 * 26 5 4 28 28 C 1.52997 * 109.47248 * 64.45090 * 26 5 4 29 29 H 1.09010 * 109.47004 * 300.00080 * 1 2 3 30 30 H 1.09002 * 109.47513 * 59.99479 * 1 2 3 31 31 H 1.08993 * 109.47171 * 179.97438 * 1 2 3 32 32 H 1.00894 * 110.99899 * 123.95447 * 2 1 3 33 33 H 1.08999 * 109.46740 * 60.00095 * 3 2 1 34 34 H 1.08999 * 109.47173 * 300.00396 * 3 2 1 35 35 H 1.09006 * 109.47031 * 59.99922 * 4 3 2 36 36 H 1.08998 * 109.46897 * 300.00711 * 4 3 2 37 37 H 0.97004 * 119.99663 * 5.15466 * 10 8 6 38 38 H 1.07998 * 120.04599 * 0.02562 * 12 11 10 39 39 H 1.07999 * 119.96386 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.47298 * 330.00403 * 15 14 13 41 41 H 1.08996 * 109.47044 * 210.00760 * 15 14 13 42 42 H 0.97004 * 119.99644 * 179.97438 * 19 18 16 43 43 H 1.08009 * 119.95865 * 179.72197 * 24 14 13 44 44 H 1.08001 * 120.03608 * 180.25184 * 25 24 14 45 45 H 1.09000 * 109.46716 * 184.45032 * 26 5 4 46 46 H 1.09000 * 109.47008 * 60.00634 * 27 26 5 47 47 H 1.08997 * 109.46888 * 180.02562 * 27 26 5 48 48 H 1.09000 * 109.47352 * 300.00616 * 27 26 5 49 49 H 1.09004 * 109.47031 * 59.99741 * 28 26 5 50 50 H 1.08997 * 109.47198 * 179.97438 * 28 26 5 51 51 H 1.09000 * 109.47215 * 299.99637 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 7 4.0500 2.6983 0.0000 6 6 4.1711 3.3731 1.1603 7 8 4.6897 4.4702 1.1729 8 6 3.6671 2.7707 2.4307 9 8 3.1847 1.6569 2.4246 10 7 3.7478 3.4638 3.5837 11 6 3.3765 2.8614 4.7885 12 6 2.8917 3.6369 5.8342 13 6 2.5262 3.0382 7.0238 14 6 2.6428 1.6685 7.1749 15 6 2.2434 1.0189 8.4747 16 6 0.7871 0.6356 8.4181 17 1 0.2087 0.8414 7.5296 18 6 0.1918 0.0268 9.5026 19 7 0.8963 -0.2243 10.5843 20 14 -1.6153 -0.4415 9.4352 21 1 -1.8379 -1.3970 8.3204 22 1 -2.0104 -1.0762 10.7182 23 1 -2.4345 0.7771 9.2134 24 6 3.1306 0.8944 6.1380 25 6 3.4923 1.4857 4.9436 26 6 4.4433 3.3324 -1.2608 27 6 5.4728 2.4537 -1.9742 28 6 3.2117 3.5017 -2.1526 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8306 -0.5261 0.7813 33 1 1.6460 1.8947 0.8900 34 1 1.6460 1.8948 -0.8899 35 1 3.8741 0.8074 -0.8909 36 1 3.8747 0.8071 0.8890 37 1 4.0637 4.3810 3.5771 38 1 2.8007 4.7067 5.7171 39 1 2.1488 3.6403 7.8371 40 1 2.4032 1.7187 9.2950 41 1 2.8481 0.1264 8.6357 42 1 0.4773 -0.6523 11.3474 43 1 3.2246 -0.1746 6.2609 44 1 3.8693 0.8800 4.1329 45 1 4.8801 4.3097 -1.0551 46 1 5.0360 1.4764 -2.1798 47 1 5.7658 2.9257 -2.9119 48 1 6.3502 2.3331 -1.3388 49 1 2.4783 4.1277 -1.6442 50 1 3.5043 3.9739 -3.0904 51 1 2.7750 2.5244 -2.3583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927866652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:07 Heat of formation + Delta-G solvation = -52.969969 kcal Electronic energy + Delta-G solvation = -30835.202603 eV Core-core repulsion = 26734.058873 eV Total energy + Delta-G solvation = -4101.143730 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.40875 -40.76009 -39.35453 -38.46496 -36.58178 -36.40217 -35.00983 -33.34364 -32.31244 -31.82584 -30.18494 -28.81297 -28.18145 -26.51947 -25.67875 -24.78950 -23.94591 -23.28426 -22.48005 -21.55146 -20.59597 -19.24018 -18.55730 -18.50598 -18.04513 -17.42159 -17.04442 -16.76693 -16.43197 -16.03939 -15.96332 -15.68205 -15.34165 -15.17019 -15.01731 -14.70166 -14.65367 -14.49182 -14.32761 -14.07935 -14.01370 -13.72418 -13.35326 -13.23709 -13.22581 -13.12748 -12.89479 -12.68160 -12.61577 -12.59609 -12.43265 -12.19319 -12.13213 -11.98085 -11.75898 -11.66741 -11.50336 -11.10656 -10.60694 -10.47456 -9.98335 -9.80427 -9.47954 -8.93734 -8.19312 -6.33404 -0.06230 0.52984 0.66535 1.10512 1.38966 1.41112 1.49521 1.97506 2.22367 2.39116 2.95447 3.04524 3.10315 3.46820 3.83734 3.97142 3.99904 4.03395 4.10006 4.20974 4.28237 4.35559 4.44343 4.49683 4.52654 4.54791 4.56354 4.62771 4.65380 4.75259 4.78546 4.93289 4.95130 4.99088 5.01210 5.09687 5.21150 5.26894 5.29634 5.32605 5.34584 5.38068 5.40637 5.55083 5.74458 5.84167 5.95286 6.04616 6.06876 6.13543 6.21730 6.33518 6.56673 6.78936 6.79076 7.34913 8.88519 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.002494 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.793553 B =11226.411577 C =12636.420884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.689 5.689 3 C 0.053 3.947 4 C 0.105 3.895 5 N -0.566 5.566 6 C 0.513 3.487 7 O -0.539 6.539 8 C 0.498 3.502 9 O -0.504 6.504 10 N -0.628 5.628 11 C 0.113 3.887 12 C -0.127 4.127 13 C -0.112 4.112 14 C -0.070 4.070 15 C 0.057 3.943 16 C -0.528 4.528 17 H 0.052 0.948 18 C 0.006 3.994 19 N -0.929 5.929 20 Si 0.962 3.038 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.268 1.268 24 C -0.115 4.115 25 C -0.119 4.119 26 C 0.123 3.877 27 C -0.157 4.157 28 C -0.159 4.159 29 H 0.008 0.992 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.345 0.655 33 H 0.014 0.986 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.429 0.571 38 H 0.155 0.845 39 H 0.126 0.874 40 H 0.007 0.993 41 H 0.003 0.997 42 H 0.266 0.734 43 H 0.116 0.884 44 H 0.139 0.861 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.090 0.910 48 H 0.052 0.948 49 H 0.047 0.953 50 H 0.090 0.910 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.799 7.135 -28.258 29.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.320 5.320 3 C -0.077 4.077 4 C -0.017 4.017 5 N -0.299 5.299 6 C 0.295 3.705 7 O -0.417 6.417 8 C 0.281 3.719 9 O -0.379 6.379 10 N -0.274 5.274 11 C 0.020 3.980 12 C -0.147 4.147 13 C -0.131 4.131 14 C -0.071 4.071 15 C 0.020 3.980 16 C -0.566 4.566 17 H 0.070 0.930 18 C -0.193 4.193 19 N -0.568 5.568 20 Si 0.787 3.213 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.193 1.193 24 C -0.134 4.134 25 C -0.139 4.139 26 C 0.022 3.978 27 C -0.215 4.215 28 C -0.216 4.216 29 H 0.027 0.973 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.162 0.838 33 H 0.033 0.967 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.268 0.732 38 H 0.172 0.828 39 H 0.144 0.856 40 H 0.026 0.974 41 H 0.022 0.978 42 H 0.075 0.925 43 H 0.134 0.866 44 H 0.157 0.843 45 H 0.111 0.889 46 H 0.090 0.910 47 H 0.109 0.891 48 H 0.072 0.928 49 H 0.066 0.934 50 H 0.109 0.891 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.805 6.795 -28.865 30.424 hybrid contribution -1.048 0.243 1.758 2.061 sum 5.757 7.038 -27.107 28.591 Atomic orbital electron populations 1.22196 0.87319 1.02528 1.00039 1.60453 1.08240 1.13409 1.49881 1.22324 0.95001 0.90363 1.00008 1.21927 0.93235 0.81088 1.05473 1.47979 1.60365 1.15782 1.05757 1.19857 0.80284 0.85322 0.85074 1.90748 1.43879 1.20692 1.86356 1.20396 0.80046 0.86210 0.85243 1.90718 1.42076 1.19286 1.85829 1.42995 1.62690 1.17796 1.03912 1.17593 1.01938 0.92502 0.85954 1.20996 1.00571 1.00791 0.92354 1.20961 1.00166 0.93980 0.97966 1.20456 0.95406 0.94433 0.96816 1.18092 0.95428 0.94457 0.89994 1.21334 0.95654 1.39299 1.00345 0.92966 1.25891 1.02857 0.95576 0.94930 1.70065 1.38244 1.43332 1.05204 0.85545 0.79441 0.78784 0.77576 1.19448 1.20470 1.19300 1.20955 0.99894 0.99807 0.92757 1.21131 1.01516 0.93766 0.97499 1.21458 0.96669 0.97983 0.81723 1.22133 0.97772 1.00462 1.01092 1.22204 0.96633 1.02855 0.99937 0.97324 0.91050 0.90354 0.83789 0.96744 0.90454 0.87488 0.88731 0.73233 0.82759 0.85590 0.97427 0.97825 0.92547 0.86587 0.84331 0.88903 0.91022 0.89094 0.92846 0.93431 0.89084 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.70 127.69 1.37 1.88 16 2 N -0.69 -12.90 6.86 -537.14 -3.68 -16.59 16 3 C 0.05 0.99 5.23 86.30 0.45 1.44 16 4 C 0.11 1.73 4.58 86.38 0.40 2.12 16 5 N -0.57 -9.78 2.39 -799.53 -1.91 -11.69 16 6 C 0.51 11.38 7.68 87.24 0.67 12.05 16 7 O -0.54 -13.57 15.83 -3.26 -0.05 -13.62 16 8 C 0.50 12.31 7.30 87.24 0.64 12.94 16 9 O -0.50 -13.67 8.84 -3.33 -0.03 -13.70 16 10 N -0.63 -15.30 5.34 -304.84 -1.63 -16.92 16 11 C 0.11 3.42 6.37 38.21 0.24 3.66 16 12 C -0.13 -3.82 9.95 22.40 0.22 -3.59 16 13 C -0.11 -4.19 9.69 22.25 0.22 -3.98 16 14 C -0.07 -3.09 5.07 -19.84 -0.10 -3.19 16 15 C 0.06 3.05 5.10 29.10 0.15 3.20 16 16 C -0.53 -30.25 9.09 25.60 0.23 -30.01 16 17 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 18 C 0.01 0.33 5.46 84.66 0.46 0.79 16 19 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 20 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 24 C -0.12 -4.60 9.69 22.25 0.22 -4.38 16 25 C -0.12 -4.05 8.68 22.40 0.19 -3.86 16 26 C 0.12 1.60 3.25 44.99 0.15 1.75 16 27 C -0.16 -1.42 9.10 71.98 0.66 -0.77 16 28 C -0.16 -1.60 8.50 71.98 0.61 -0.99 16 29 H 0.01 0.17 8.14 -2.38 -0.02 0.15 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.34 6.86 8.82 -89.70 -0.79 6.07 16 33 H 0.01 0.35 6.46 -2.39 -0.02 0.33 16 34 H 0.08 1.29 6.09 -2.39 -0.01 1.28 16 35 H 0.11 1.36 6.21 -2.38 -0.01 1.34 16 36 H 0.09 1.87 5.76 -2.39 -0.01 1.85 16 37 H 0.43 8.55 8.28 -92.71 -0.77 7.79 16 38 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 39 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 40 H 0.01 0.42 8.08 -2.39 -0.02 0.40 16 41 H 0.00 0.20 8.08 -2.39 -0.02 0.18 16 42 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 43 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 44 H 0.14 4.44 6.04 -2.91 -0.02 4.42 16 45 H 0.09 1.46 6.91 -2.39 -0.02 1.44 16 46 H 0.07 0.57 6.51 -2.39 -0.02 0.55 16 47 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 49 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.07 0.67 6.53 -2.39 -0.02 0.66 16 Total: -1.00 -67.43 409.83 1.18 -66.25 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: -0.60 Total: 26.34 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 6.77 Total: -10.92 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -6.93 Total: -100.82 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.08 Total: -27.32 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -67.43 1.18 -66.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927866652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.280 kcal (2) G-P(sol) polarization free energy of solvation -67.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds