Wall clock time and date at job start Wed Apr 1 2020 05:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46508 * 109.47152 * 108.15676 * 3 2 1 5 5 C 1.34776 * 119.99961 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00166 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.99857 * 180.02562 * 5 4 3 8 8 C 1.50698 * 109.47236 * 179.97438 * 7 5 4 9 9 O 1.21286 * 120.00081 * 359.97438 * 8 7 5 10 10 N 1.34773 * 120.00205 * 180.02562 * 8 7 5 11 11 C 1.46930 * 120.63207 * 359.71307 * 10 8 7 12 12 C 1.52761 * 109.00785 * 233.59113 * 11 10 8 13 13 C 1.53045 * 109.38131 * 305.58453 * 12 11 10 14 14 C 1.53001 * 109.44646 * 181.25739 * 13 12 11 15 15 H 1.08999 * 109.87705 * 62.21043 * 14 13 12 16 16 C 1.54319 * 109.88223 * 301.18764 * 14 13 12 17 17 C 1.55154 * 102.94692 * 218.38957 * 16 14 13 18 18 C 1.54922 * 101.57726 * 35.50406 * 17 16 14 19 19 N 1.47027 * 109.87819 * 183.38498 * 14 13 12 20 20 C 1.36936 * 125.64576 * 298.33254 * 19 14 13 21 21 H 1.07998 * 120.00313 * 345.41240 * 20 19 14 22 22 C 1.38818 * 119.99810 * 165.41153 * 20 19 14 23 23 N 1.31616 * 119.99703 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99755 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47354 * 60.00484 * 24 22 20 26 26 H 1.48509 * 109.46764 * 179.97438 * 24 22 20 27 27 H 1.48490 * 109.47400 * 299.99731 * 24 22 20 28 28 C 1.53039 * 109.53623 * 61.24326 * 13 12 11 29 29 C 1.46930 * 120.62974 * 179.97438 * 10 8 7 30 30 H 4.40644 * 5.51570 * 179.97438 * 4 1 2 31 31 H 1.09000 * 109.47364 * 348.15347 * 3 2 1 32 32 H 1.09000 * 109.46900 * 228.15421 * 3 2 1 33 33 H 0.96995 * 119.99540 * 359.97438 * 4 3 2 34 34 H 1.09000 * 109.47614 * 59.99247 * 7 5 4 35 35 H 1.09010 * 109.46906 * 299.99268 * 7 5 4 36 36 H 1.09004 * 109.58165 * 353.42214 * 11 10 8 37 37 H 1.08993 * 109.58537 * 113.84754 * 11 10 8 38 38 H 1.09005 * 109.56403 * 185.55326 * 12 11 10 39 39 H 1.08997 * 109.36524 * 65.49447 * 12 11 10 40 40 H 1.09005 * 109.45816 * 301.21989 * 13 12 11 41 41 H 1.09000 * 110.72468 * 336.76170 * 16 14 13 42 42 H 1.09008 * 110.71587 * 99.85544 * 16 14 13 43 43 H 1.08997 * 111.00611 * 153.57677 * 17 16 14 44 44 H 1.08995 * 111.00460 * 277.43778 * 17 16 14 45 45 H 1.09000 * 110.35919 * 81.83040 * 18 17 16 46 46 H 1.08994 * 110.36392 * 204.04117 * 18 17 16 47 47 H 0.97001 * 120.00048 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.49606 * 178.68381 * 28 13 12 49 49 H 1.08999 * 109.49944 * 58.59226 * 28 13 12 50 50 H 1.09004 * 109.58543 * 246.14545 * 29 10 8 51 51 H 1.08996 * 109.58803 * 6.43340 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.4313 -1.3125 5 6 4.4592 0.5081 -1.5467 6 8 5.2474 0.2213 -0.6708 7 6 4.9613 0.9517 -2.8965 8 6 6.4682 0.9522 -2.8966 9 8 7.0749 0.6252 -1.8986 10 7 7.1419 1.3172 -4.0053 11 6 6.4212 1.7110 -5.2237 12 6 6.9296 0.8730 -6.3954 13 6 8.4510 1.0074 -6.4935 14 6 8.9584 0.1936 -7.6857 15 1 8.5349 0.5867 -8.6099 16 6 8.5632 -1.2884 -7.5158 17 6 9.8076 -2.0437 -8.0527 18 6 10.9584 -1.1162 -7.5888 19 7 10.4266 0.2503 -7.7410 20 6 11.1757 1.3844 -7.9072 21 1 10.7065 2.2972 -8.2431 22 6 12.5385 1.3608 -7.6437 23 7 13.1103 0.2484 -7.2339 24 14 13.5606 2.9077 -7.8710 25 1 13.0420 3.9787 -6.9825 26 1 14.9761 2.6208 -7.5255 27 1 13.4763 3.3534 -9.2849 28 6 9.0950 0.4839 -5.2077 29 6 8.6112 1.3233 -4.0205 30 1 -1.0501 -0.0002 0.0000 31 1 3.0098 -1.0049 0.2110 32 1 3.0089 0.6864 0.7656 33 1 2.5037 0.6604 -2.0131 34 1 4.5979 1.9575 -3.1069 35 1 4.5978 0.2664 -3.6625 36 1 5.3535 1.5379 -5.0886 37 1 6.5994 2.7666 -5.4285 38 1 6.4730 1.2243 -7.3207 39 1 6.6665 -0.1722 -6.2332 40 1 8.7148 2.0561 -6.6310 41 1 8.3924 -1.5241 -6.4654 42 1 7.6803 -1.5226 -8.1107 43 1 9.8928 -3.0301 -7.5968 44 1 9.7803 -2.1185 -9.1398 45 1 11.2068 -1.3126 -6.5458 46 1 11.8361 -1.2560 -8.2198 47 1 14.0626 0.2318 -7.0501 48 1 10.1795 0.5583 -5.2876 49 1 8.8115 -0.5577 -5.0567 50 1 8.9712 2.3468 -4.1256 51 1 8.9880 0.8969 -3.0909 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230552773.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:53 Heat of formation + Delta-G solvation = -9.277311 kcal Electronic energy + Delta-G solvation = -31121.461341 eV Core-core repulsion = 27022.212267 eV Total energy + Delta-G solvation = -4099.249074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.59514 -40.53188 -39.51849 -37.61036 -36.38450 -34.70287 -33.89717 -33.51665 -32.49316 -31.31817 -30.97268 -29.04939 -27.74553 -26.50922 -25.17315 -24.13653 -22.73138 -21.98276 -21.65819 -20.65937 -19.69820 -19.22240 -18.69857 -18.31782 -17.40578 -17.06781 -16.93145 -16.83765 -16.39745 -16.23079 -15.97261 -15.70623 -15.28279 -14.90730 -14.85963 -14.65107 -14.28847 -14.26114 -14.04718 -13.87972 -13.81296 -13.43483 -13.30928 -12.99812 -12.93059 -12.80052 -12.72625 -12.53332 -12.10359 -12.05128 -11.83060 -11.76812 -11.70453 -11.46512 -11.44368 -11.30738 -11.15399 -10.90184 -10.86997 -10.59117 -10.45317 -10.10754 -9.55636 -8.69170 -7.79892 -5.14021 1.37858 1.45609 1.47652 1.53405 1.61449 1.74164 1.85653 2.01204 2.52919 2.61866 3.37625 3.38826 3.43115 3.71017 3.82579 3.94674 4.04503 4.12652 4.26601 4.30137 4.31447 4.37226 4.38288 4.41371 4.44887 4.51676 4.57710 4.65651 4.76981 4.84413 4.88242 4.92482 4.97413 5.02235 5.12051 5.13628 5.23562 5.26244 5.32101 5.33240 5.36200 5.55571 5.63524 5.71324 5.72458 5.79043 5.84224 6.32080 6.48726 6.57131 6.59773 7.17753 7.21719 7.37039 7.88651 8.56625 9.31438 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.002216 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.314236 B =12634.508200 C =13180.007263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.247 4.247 3 C 0.231 3.769 4 N -0.715 5.715 5 C 0.510 3.490 6 O -0.554 6.554 7 C -0.149 4.149 8 C 0.503 3.497 9 O -0.565 6.565 10 N -0.606 5.606 11 C 0.104 3.896 12 C -0.123 4.123 13 C -0.084 4.084 14 C 0.157 3.843 15 H 0.037 0.963 16 C -0.113 4.113 17 C -0.140 4.140 18 C 0.180 3.820 19 N -0.609 5.609 20 C -0.219 4.219 21 H 0.077 0.923 22 C -0.066 4.066 23 N -0.949 5.949 24 Si 0.965 3.035 25 H -0.279 1.279 26 H -0.302 1.302 27 H -0.277 1.277 28 C -0.101 4.101 29 C 0.122 3.878 30 H 0.254 0.746 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.420 0.580 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.130 0.870 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.064 0.936 45 H -0.012 1.012 46 H 0.026 0.974 47 H 0.242 0.758 48 H 0.041 0.959 49 H 0.051 0.949 50 H 0.060 0.940 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.285 1.266 4.534 30.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.247 4.247 3 C 0.109 3.891 4 N -0.371 5.371 5 C 0.296 3.704 6 O -0.430 6.430 7 C -0.191 4.191 8 C 0.291 3.709 9 O -0.443 6.443 10 N -0.340 5.340 11 C -0.018 4.018 12 C -0.161 4.161 13 C -0.105 4.105 14 C 0.051 3.949 15 H 0.055 0.945 16 C -0.151 4.151 17 C -0.179 4.179 18 C 0.055 3.945 19 N -0.333 5.333 20 C -0.349 4.349 21 H 0.095 0.905 22 C -0.259 4.259 23 N -0.598 5.598 24 Si 0.794 3.206 25 H -0.206 1.206 26 H -0.228 1.228 27 H -0.203 1.203 28 C -0.139 4.139 29 C -0.002 4.002 30 H 0.270 0.730 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.258 0.742 34 H 0.184 0.816 35 H 0.183 0.817 36 H 0.148 0.852 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.006 0.994 46 H 0.044 0.956 47 H 0.052 0.948 48 H 0.060 0.940 49 H 0.069 0.931 50 H 0.079 0.921 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -29.157 0.959 5.709 29.726 hybrid contribution 1.567 0.741 -0.086 1.736 sum -27.589 1.700 5.623 28.208 Atomic orbital electron populations 1.25848 0.96635 0.98339 0.95458 1.22899 0.94299 1.02981 1.04546 1.17889 0.84027 1.01115 0.86115 1.45791 1.06448 1.69609 1.15220 1.20590 0.82104 0.77554 0.90173 1.90886 1.56009 1.48535 1.47562 1.21684 0.91396 1.09119 0.96884 1.20817 0.90983 0.76821 0.82314 1.90838 1.70898 1.48279 1.34263 1.48241 1.06077 1.66563 1.13118 1.22034 0.97979 0.99431 0.82312 1.21903 0.93555 1.01377 0.99262 1.21429 0.95628 0.99077 0.94351 1.21219 0.83550 0.94873 0.95258 0.94476 1.22614 0.97505 0.93787 1.01153 1.22890 0.96419 0.98242 1.00331 1.21117 0.93912 0.83830 0.95679 1.44693 1.01169 1.02784 1.84652 1.19187 0.90231 0.89727 1.35763 0.90500 1.25592 0.98641 0.99564 1.02059 1.70144 1.09808 1.26790 1.53102 0.85349 0.77422 0.79826 0.77961 1.20563 1.22844 1.20331 1.21608 0.99726 0.98228 0.94365 1.21347 0.80524 0.99768 0.98535 0.72962 0.90117 0.90060 0.74248 0.81610 0.81680 0.85200 0.90463 0.88256 0.90793 0.93334 0.91486 0.88775 0.90906 0.91775 0.99408 0.95564 0.94843 0.94024 0.93052 0.92143 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 19.25 74.32 1.43 0.33 16 2 C -0.25 -2.94 13.46 31.12 0.42 -2.52 16 3 C 0.23 3.45 6.15 84.57 0.52 3.97 16 4 N -0.72 -9.11 5.54 -472.13 -2.61 -11.72 16 5 C 0.51 10.47 7.82 87.66 0.69 11.16 16 6 O -0.55 -18.97 14.18 20.42 0.29 -18.68 16 7 C -0.15 -1.97 4.53 29.10 0.13 -1.84 16 8 C 0.50 13.51 7.69 87.66 0.67 14.18 16 9 O -0.57 -22.68 13.59 20.39 0.28 -22.41 16 10 N -0.61 -15.05 2.98 -819.64 -2.44 -17.49 16 11 C 0.10 1.56 6.31 86.22 0.54 2.10 16 12 C -0.12 -2.32 5.06 30.53 0.15 -2.16 16 13 C -0.08 -2.64 1.91 -10.77 -0.02 -2.66 16 14 C 0.16 5.68 2.97 45.34 0.13 5.81 16 15 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 16 C -0.11 -3.44 5.20 31.78 0.17 -3.28 16 17 C -0.14 -5.07 7.09 31.99 0.23 -4.84 16 18 C 0.18 8.85 5.41 86.86 0.47 9.32 16 19 N -0.61 -29.51 2.22 -668.25 -1.48 -31.00 16 20 C -0.22 -11.83 9.87 84.04 0.83 -11.00 16 21 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 22 C -0.07 -3.72 5.47 84.86 0.46 -3.25 16 23 N -0.95 -57.76 10.58 21.65 0.23 -57.53 16 24 Si 0.96 46.17 29.55 68.60 2.03 48.20 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 26 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 27 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 28 C -0.10 -3.71 4.94 30.68 0.15 -3.56 16 29 C 0.12 4.08 6.44 86.38 0.56 4.64 16 30 H 0.25 -0.14 7.80 -4.41 -0.03 -0.17 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.42 2.16 8.45 -92.71 -0.78 1.38 16 34 H 0.17 0.73 7.95 -2.39 -0.02 0.71 16 35 H 0.17 0.80 7.68 -2.38 -0.02 0.78 16 36 H 0.13 0.64 5.94 -2.38 -0.01 0.63 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.07 1.33 7.02 -2.39 -0.02 1.32 16 40 H 0.05 1.71 8.07 -2.38 -0.02 1.69 16 41 H 0.07 2.05 5.50 -2.39 -0.01 2.03 16 42 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 43 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 45 H -0.01 -0.67 8.06 -2.39 -0.02 -0.69 16 46 H 0.03 1.47 6.93 -2.39 -0.02 1.46 16 47 H 0.24 14.60 8.31 -92.71 -0.77 13.83 16 48 H 0.04 1.99 7.49 -2.39 -0.02 1.97 16 49 H 0.05 1.90 6.20 -2.39 -0.01 1.88 16 50 H 0.06 2.03 8.14 -2.38 -0.02 2.02 16 51 H 0.06 2.26 7.00 -2.39 -0.02 2.25 16 Total: -1.00 -88.36 403.03 3.97 -84.39 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.15 Total: 9.85 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 7.54 Total: 16.40 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -6.31 Total: -117.74 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: 0.57 Total: -41.09 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -88.36 3.97 -84.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230552773.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.108 kcal (2) G-P(sol) polarization free energy of solvation -88.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds