Wall clock time and date at job start Wed Apr 1 2020 04:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47096 * 2 1 4 4 N 1.46508 * 109.47198 * 191.35705 * 3 2 1 5 5 C 1.34771 * 119.99980 * 262.44346 * 4 3 2 6 6 O 1.21517 * 120.00131 * 185.45736 * 5 4 3 7 7 C 1.48159 * 120.00128 * 5.46471 * 5 4 3 8 8 C 1.39166 * 119.68841 * 186.08033 * 7 5 4 9 9 C 1.38750 * 119.18326 * 179.74789 * 8 7 5 10 10 C 1.38372 * 118.55448 * 0.51609 * 9 8 7 11 11 C 1.39238 * 119.30978 * 359.72491 * 10 9 8 12 12 O 1.35666 * 119.61642 * 180.02562 * 11 10 9 13 13 C 1.42903 * 117.00012 * 181.36997 * 12 11 10 14 14 N 1.31924 * 120.76858 * 0.02562 * 11 10 9 15 15 C 1.46501 * 120.00023 * 82.44455 * 4 3 2 16 16 C 1.53043 * 109.45940 * 240.00498 * 15 4 3 17 17 C 1.53192 * 109.31181 * 178.61642 * 16 15 4 18 18 N 1.46924 * 108.89419 * 54.55844 * 17 16 15 19 19 C 1.36934 * 120.62806 * 126.46381 * 18 17 16 20 20 H 1.08000 * 120.00276 * 319.62828 * 19 18 17 21 21 C 1.38814 * 119.99746 * 139.63010 * 19 18 17 22 22 N 1.31622 * 120.00322 * 352.69220 * 21 19 18 23 23 Si 1.86807 * 119.99793 * 172.70313 * 21 19 18 24 24 H 1.48496 * 109.47373 * 59.99879 * 23 21 19 25 25 H 1.48500 * 109.47018 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46710 * 299.99565 * 23 21 19 27 27 C 1.46960 * 118.71557 * 306.64286 * 18 17 16 28 28 C 1.53038 * 109.45949 * 119.93132 * 15 4 3 29 29 H 1.09005 * 109.47150 * 72.17944 * 1 2 3 30 30 H 1.08998 * 109.47145 * 192.17778 * 1 2 3 31 31 H 1.08998 * 109.47694 * 312.17940 * 1 2 3 32 32 H 1.09003 * 109.47650 * 239.99374 * 2 1 3 33 33 H 1.09008 * 109.47083 * 119.99649 * 2 1 3 34 34 H 1.08993 * 109.47564 * 71.35793 * 3 2 1 35 35 H 1.08998 * 109.47470 * 311.35366 * 3 2 1 36 36 H 1.07997 * 120.40921 * 0.02562 * 8 7 5 37 37 H 1.07993 * 120.71991 * 180.21848 * 9 8 7 38 38 H 1.08006 * 120.34169 * 179.75285 * 10 9 8 39 39 H 1.09004 * 109.47150 * 306.39380 * 13 12 11 40 40 H 1.08991 * 109.47243 * 66.40122 * 13 12 11 41 41 H 1.09002 * 109.47256 * 186.39789 * 13 12 11 42 42 H 1.09000 * 109.45771 * 359.97332 * 15 4 3 43 43 H 1.08994 * 109.50013 * 58.65718 * 16 15 4 44 44 H 1.09003 * 109.49372 * 298.56119 * 16 15 4 45 45 H 1.08997 * 109.58760 * 174.42397 * 17 16 15 46 46 H 1.09008 * 109.58276 * 294.70272 * 17 16 15 47 47 H 0.96995 * 120.00006 * 179.97438 * 22 21 19 48 48 H 1.09005 * 109.46755 * 293.57079 * 27 18 17 49 49 H 1.09001 * 109.71103 * 173.29192 * 27 18 17 50 50 H 1.08997 * 109.49717 * 301.33875 * 28 15 4 51 51 H 1.08994 * 109.49509 * 61.43628 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4795 1.4515 -0.2720 5 6 4.3574 1.5329 0.7473 6 8 5.5460 1.6404 0.5185 7 6 3.8734 1.4911 2.1470 8 6 4.7676 1.7026 3.1922 9 6 4.3020 1.6663 4.4987 10 6 2.9598 1.4091 4.7157 11 6 2.1205 1.2013 3.6243 12 8 0.8034 0.9491 3.8298 13 6 -0.0006 0.7146 2.6720 14 7 2.5911 1.2468 2.3927 15 6 3.9647 1.3721 -1.6520 16 6 4.8371 0.1252 -1.8149 17 6 5.3143 0.0269 -3.2672 18 7 5.9824 1.2828 -3.6346 19 6 7.2490 1.2730 -4.1549 20 1 7.9921 0.5994 -3.7543 21 6 7.5778 2.1288 -5.1971 22 7 6.6407 2.8452 -5.7811 23 14 9.3504 2.2636 -5.7711 24 1 9.8227 0.9346 -6.2356 25 1 9.4359 3.2373 -6.8891 26 1 10.2014 2.7258 -4.6453 27 6 5.2665 2.5497 -3.4291 28 6 4.7899 2.6199 -1.9749 29 1 -0.3634 0.3145 -0.9784 30 1 -0.3633 -1.0045 0.2168 31 1 -0.3634 0.6900 0.7615 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.8514 1.8946 0.9737 35 1 1.5209 2.0114 -0.7714 36 1 5.8102 1.8970 2.9886 37 1 4.9735 1.8305 5.3284 38 1 2.5673 1.3703 5.7211 39 1 0.1216 1.5408 1.9714 40 1 0.3107 -0.2149 2.1956 41 1 -1.0476 0.6394 2.9658 42 1 3.1155 1.3125 -2.3327 43 1 4.2554 -0.7612 -1.5621 44 1 5.6999 0.1959 -1.1525 45 1 6.0147 -0.8023 -3.3664 46 1 4.4588 -0.1372 -3.9226 47 1 6.8706 3.4435 -6.5091 48 1 4.4069 2.5939 -4.0979 49 1 5.9336 3.3866 -3.6358 50 1 4.1746 3.5089 -1.8361 51 1 5.6530 2.6670 -1.3111 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266390064.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:46 Heat of formation + Delta-G solvation = 18.853224 kcal Electronic energy + Delta-G solvation = -32521.108400 eV Core-core repulsion = 28423.079158 eV Total energy + Delta-G solvation = -4098.029243 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.30785 -39.74864 -38.15424 -36.83628 -36.07774 -33.52382 -32.95176 -31.96221 -31.02982 -29.98010 -29.50309 -27.64675 -26.24616 -25.51001 -24.01238 -23.21530 -22.22370 -22.10787 -21.57122 -20.12688 -19.17640 -18.34855 -17.39106 -16.58504 -16.41745 -16.30895 -16.16788 -15.62758 -15.08995 -14.80306 -14.66526 -14.38561 -14.12669 -13.70821 -13.52924 -13.50459 -13.43799 -13.26889 -12.89326 -12.69761 -12.51191 -12.42835 -12.14614 -11.95478 -11.86587 -11.40026 -11.28998 -11.21421 -11.07701 -10.89213 -10.70695 -10.66170 -10.41027 -10.18872 -10.07739 -10.00817 -9.84393 -9.67151 -9.30978 -9.10514 -8.81801 -8.41595 -8.19897 -6.37762 -5.71302 -3.27265 0.46350 0.97131 2.73753 2.78164 3.09971 3.43974 3.47886 3.50417 3.68299 3.82854 4.48973 4.55777 4.66531 4.72364 4.84379 4.90875 4.99481 5.03026 5.08437 5.15547 5.28369 5.29172 5.43165 5.46388 5.50401 5.62844 5.66203 5.72713 5.81256 5.82043 5.87235 5.91012 5.92689 6.04178 6.12581 6.25451 6.38280 6.44040 6.47120 6.61751 6.68167 6.82448 6.90428 6.92497 7.11457 7.17290 7.35231 7.46620 7.63057 7.77187 7.90428 8.36995 8.63360 9.32776 9.90828 10.55957 11.36652 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018118 B = 0.002934 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.032878 B = 9542.494434 C =10579.569626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.132 4.132 3 C 0.090 3.910 4 N -0.587 5.587 5 C 0.561 3.439 6 O -0.511 6.511 7 C 0.125 3.875 8 C -0.149 4.149 9 C -0.046 4.046 10 C -0.173 4.173 11 C 0.311 3.689 12 O -0.309 6.309 13 C 0.023 3.977 14 N -0.504 5.504 15 C 0.159 3.841 16 C -0.145 4.145 17 C 0.152 3.848 18 N -0.587 5.587 19 C -0.256 4.256 20 H 0.058 0.942 21 C 0.013 3.987 22 N -0.901 5.901 23 Si 0.902 3.098 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.182 3.818 28 C -0.156 4.156 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.122 0.878 35 H 0.061 0.939 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.045 0.955 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.015 0.985 47 H 0.254 0.746 48 H 0.017 0.983 49 H 0.074 0.926 50 H 0.043 0.957 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.052 -3.255 21.018 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.171 4.171 3 C -0.033 4.033 4 N -0.317 5.317 5 C 0.347 3.653 6 O -0.386 6.386 7 C -0.011 4.011 8 C -0.170 4.170 9 C -0.072 4.072 10 C -0.193 4.193 11 C 0.131 3.869 12 O -0.216 6.216 13 C -0.071 4.071 14 N -0.231 5.231 15 C 0.058 3.942 16 C -0.185 4.185 17 C 0.025 3.975 18 N -0.310 5.310 19 C -0.386 4.386 20 H 0.075 0.925 21 C -0.186 4.186 22 N -0.544 5.544 23 Si 0.732 3.268 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.208 1.208 27 C 0.056 3.944 28 C -0.196 4.196 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.139 0.861 35 H 0.080 0.920 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.033 0.967 47 H 0.064 0.936 48 H 0.035 0.965 49 H 0.093 0.907 50 H 0.062 0.938 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.113 -3.228 20.221 25.450 hybrid contribution 1.100 0.159 0.037 1.112 sum -14.013 -3.069 20.258 24.823 Atomic orbital electron populations 1.22251 0.96049 1.01806 1.02389 1.21845 0.95260 0.97729 1.02269 1.22422 0.79660 0.97251 1.03969 1.48172 1.06427 1.70500 1.06635 1.17883 0.85960 0.78109 0.83393 1.90821 1.15479 1.48646 1.83655 1.21122 0.87962 0.96805 0.95259 1.22030 1.02087 1.00938 0.91929 1.21458 0.94452 0.94099 0.97174 1.21265 0.93321 1.05676 0.99088 1.19989 0.85212 0.92282 0.89440 1.86245 1.15539 1.84635 1.35183 1.23806 0.93999 1.02397 0.86874 1.67719 1.15773 1.18848 1.20791 1.21163 0.96665 0.97235 0.79180 1.22432 0.99905 0.95063 1.01093 1.20849 0.95343 0.90526 0.90770 1.43851 1.14717 0.99244 1.73193 1.19020 0.87002 1.21876 1.10745 0.92457 1.25387 0.97400 1.00152 0.95685 1.69959 1.31294 1.28572 1.24590 0.86394 0.84904 0.77499 0.78041 1.20774 1.21645 1.20815 1.20623 0.95196 0.90180 0.88436 1.22673 1.00082 0.94458 1.02393 0.92721 0.92754 0.91432 0.92023 0.91716 0.86141 0.92026 0.83054 0.83410 0.83844 0.91121 0.91059 0.88732 0.90401 0.93624 0.90448 0.92685 0.96731 0.93612 0.96477 0.90720 0.93842 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 8.21 37.15 0.30 -1.01 16 2 C -0.13 -1.42 5.32 -26.74 -0.14 -1.56 16 3 C 0.09 1.09 4.67 -4.04 -0.02 1.07 16 4 N -0.59 -9.13 2.43 -167.05 -0.41 -9.54 16 5 C 0.56 9.26 7.06 -12.19 -0.09 9.17 16 6 O -0.51 -10.15 12.61 5.35 0.07 -10.08 16 7 C 0.12 1.66 6.58 -83.02 -0.55 1.12 16 8 C -0.15 -1.67 9.63 -39.05 -0.38 -2.05 16 9 C -0.05 -0.38 10.16 -39.34 -0.40 -0.78 16 10 C -0.17 -1.45 10.04 -39.16 -0.39 -1.85 16 11 C 0.31 3.19 7.49 -17.14 -0.13 3.06 16 12 O -0.31 -2.88 10.48 -18.70 -0.20 -3.07 16 13 C 0.02 0.17 7.82 101.05 0.79 0.96 16 14 N -0.50 -5.82 3.81 -9.88 -0.04 -5.86 16 15 C 0.16 2.89 2.50 -67.89 -0.17 2.72 16 16 C -0.14 -2.81 5.27 -26.61 -0.14 -2.95 16 17 C 0.15 3.40 6.51 -3.71 -0.02 3.38 16 18 N -0.59 -15.48 2.94 -172.29 -0.51 -15.98 16 19 C -0.26 -7.37 9.47 -15.06 -0.14 -7.51 16 20 H 0.06 1.64 7.84 -52.49 -0.41 1.23 16 21 C 0.01 0.39 5.09 -17.43 -0.09 0.30 16 22 N -0.90 -26.82 11.59 55.49 0.64 -26.18 16 23 Si 0.90 22.34 29.56 -169.99 -5.02 17.32 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.18 4.53 5.21 -3.69 -0.02 4.51 16 28 C -0.16 -3.27 5.26 -26.61 -0.14 -3.41 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.44 3.68 -51.93 -0.19 0.25 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.74 6.44 -51.92 -0.33 0.41 16 34 H 0.12 1.41 3.50 -64.02 -0.22 1.18 16 35 H 0.06 0.72 8.04 -51.93 -0.42 0.30 16 36 H 0.15 1.72 7.65 -52.49 -0.40 1.32 16 37 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 39 H 0.07 0.51 5.11 -51.93 -0.27 0.25 16 40 H 0.07 0.53 5.19 -51.93 -0.27 0.26 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 1.36 7.89 -51.93 -0.41 0.95 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.69 6.40 -51.93 -0.33 1.36 16 45 H 0.05 1.22 7.93 -51.93 -0.41 0.81 16 46 H 0.01 0.33 8.14 -51.92 -0.42 -0.10 16 47 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.07 2.07 6.74 -51.93 -0.35 1.72 16 50 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.08 1.92 6.04 -51.93 -0.31 1.61 16 LS Contribution 383.02 15.07 5.77 5.77 Total: -1.00 -32.78 383.02 -9.10 -41.88 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.70 Total: 0.59 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.72 Total: 5.15 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.31 Total: -57.56 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.13 Total: -13.16 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.78 -9.10 -41.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266390064.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.738 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds