Wall clock time and date at job start Wed Apr 1 2020 04:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47096 * 2 1 4 4 N 1.46508 * 109.47198 * 191.35705 * 3 2 1 5 5 C 1.34771 * 119.99980 * 262.44346 * 4 3 2 6 6 O 1.21517 * 120.00131 * 185.45736 * 5 4 3 7 7 C 1.48159 * 120.00128 * 5.46471 * 5 4 3 8 8 C 1.39166 * 119.68841 * 186.08033 * 7 5 4 9 9 C 1.38750 * 119.18326 * 179.74789 * 8 7 5 10 10 C 1.38372 * 118.55448 * 0.51609 * 9 8 7 11 11 C 1.39238 * 119.30978 * 359.72491 * 10 9 8 12 12 O 1.35666 * 119.61642 * 180.02562 * 11 10 9 13 13 C 1.42903 * 117.00012 * 181.36997 * 12 11 10 14 14 N 1.31924 * 120.76858 * 0.02562 * 11 10 9 15 15 C 1.46501 * 120.00023 * 82.44455 * 4 3 2 16 16 C 1.53043 * 109.45940 * 240.00498 * 15 4 3 17 17 C 1.53192 * 109.31181 * 178.61642 * 16 15 4 18 18 N 1.46924 * 108.89419 * 54.55844 * 17 16 15 19 19 C 1.36934 * 120.62806 * 126.46381 * 18 17 16 20 20 H 1.08000 * 120.00276 * 319.62828 * 19 18 17 21 21 C 1.38814 * 119.99746 * 139.63010 * 19 18 17 22 22 N 1.31622 * 120.00322 * 352.69220 * 21 19 18 23 23 Si 1.86807 * 119.99793 * 172.70313 * 21 19 18 24 24 H 1.48496 * 109.47373 * 59.99879 * 23 21 19 25 25 H 1.48500 * 109.47018 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46710 * 299.99565 * 23 21 19 27 27 C 1.46960 * 118.71557 * 306.64286 * 18 17 16 28 28 C 1.53038 * 109.45949 * 119.93132 * 15 4 3 29 29 H 1.09005 * 109.47150 * 72.17944 * 1 2 3 30 30 H 1.08998 * 109.47145 * 192.17778 * 1 2 3 31 31 H 1.08998 * 109.47694 * 312.17940 * 1 2 3 32 32 H 1.09003 * 109.47650 * 239.99374 * 2 1 3 33 33 H 1.09008 * 109.47083 * 119.99649 * 2 1 3 34 34 H 1.08993 * 109.47564 * 71.35793 * 3 2 1 35 35 H 1.08998 * 109.47470 * 311.35366 * 3 2 1 36 36 H 1.07997 * 120.40921 * 0.02562 * 8 7 5 37 37 H 1.07993 * 120.71991 * 180.21848 * 9 8 7 38 38 H 1.08006 * 120.34169 * 179.75285 * 10 9 8 39 39 H 1.09004 * 109.47150 * 306.39380 * 13 12 11 40 40 H 1.08991 * 109.47243 * 66.40122 * 13 12 11 41 41 H 1.09002 * 109.47256 * 186.39789 * 13 12 11 42 42 H 1.09000 * 109.45771 * 359.97332 * 15 4 3 43 43 H 1.08994 * 109.50013 * 58.65718 * 16 15 4 44 44 H 1.09003 * 109.49372 * 298.56119 * 16 15 4 45 45 H 1.08997 * 109.58760 * 174.42397 * 17 16 15 46 46 H 1.09008 * 109.58276 * 294.70272 * 17 16 15 47 47 H 0.96995 * 120.00006 * 179.97438 * 22 21 19 48 48 H 1.09005 * 109.46755 * 293.57079 * 27 18 17 49 49 H 1.09001 * 109.71103 * 173.29192 * 27 18 17 50 50 H 1.08997 * 109.49717 * 301.33875 * 28 15 4 51 51 H 1.08994 * 109.49509 * 61.43628 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4795 1.4515 -0.2720 5 6 4.3574 1.5329 0.7473 6 8 5.5460 1.6404 0.5185 7 6 3.8734 1.4911 2.1470 8 6 4.7676 1.7026 3.1922 9 6 4.3020 1.6663 4.4987 10 6 2.9598 1.4091 4.7157 11 6 2.1205 1.2013 3.6243 12 8 0.8034 0.9491 3.8298 13 6 -0.0006 0.7146 2.6720 14 7 2.5911 1.2468 2.3927 15 6 3.9647 1.3721 -1.6520 16 6 4.8371 0.1252 -1.8149 17 6 5.3143 0.0269 -3.2672 18 7 5.9824 1.2828 -3.6346 19 6 7.2490 1.2730 -4.1549 20 1 7.9921 0.5994 -3.7543 21 6 7.5778 2.1288 -5.1971 22 7 6.6407 2.8452 -5.7811 23 14 9.3504 2.2636 -5.7711 24 1 9.8227 0.9346 -6.2356 25 1 9.4359 3.2373 -6.8891 26 1 10.2014 2.7258 -4.6453 27 6 5.2665 2.5497 -3.4291 28 6 4.7899 2.6199 -1.9749 29 1 -0.3634 0.3145 -0.9784 30 1 -0.3633 -1.0045 0.2168 31 1 -0.3634 0.6900 0.7615 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.8514 1.8946 0.9737 35 1 1.5209 2.0114 -0.7714 36 1 5.8102 1.8970 2.9886 37 1 4.9735 1.8305 5.3284 38 1 2.5673 1.3703 5.7211 39 1 0.1216 1.5408 1.9714 40 1 0.3107 -0.2149 2.1956 41 1 -1.0476 0.6394 2.9658 42 1 3.1155 1.3125 -2.3327 43 1 4.2554 -0.7612 -1.5621 44 1 5.6999 0.1959 -1.1525 45 1 6.0147 -0.8023 -3.3664 46 1 4.4588 -0.1372 -3.9226 47 1 6.8706 3.4435 -6.5091 48 1 4.4069 2.5939 -4.0979 49 1 5.9336 3.3866 -3.6358 50 1 4.1746 3.5089 -1.8361 51 1 5.6530 2.6670 -1.3111 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266390064.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:45 Heat of formation + Delta-G solvation = -0.765592 kcal Electronic energy + Delta-G solvation = -32521.959136 eV Core-core repulsion = 28423.079158 eV Total energy + Delta-G solvation = -4098.879979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.23065 -40.89741 -39.08998 -38.33253 -37.31566 -35.05896 -33.78029 -33.50440 -31.97604 -31.69847 -31.25953 -28.37341 -27.24647 -27.12461 -25.33574 -24.03203 -23.87364 -23.64094 -22.56616 -21.48287 -20.68998 -19.15611 -18.95682 -18.10655 -17.33902 -17.15283 -17.01608 -16.88351 -16.66649 -16.16450 -15.69224 -15.56877 -15.35583 -15.25884 -15.08865 -14.77455 -14.60590 -14.29632 -14.19427 -14.04409 -13.94154 -13.40415 -13.22330 -13.07197 -13.00441 -12.80782 -12.69913 -12.67856 -12.56047 -12.29735 -12.09420 -12.03301 -12.00091 -11.81146 -11.51986 -11.44116 -11.37925 -10.98808 -10.80957 -10.57295 -10.13576 -9.72087 -9.44805 -8.51421 -7.89478 -5.50502 -0.39699 0.23231 1.43584 1.46677 1.53375 1.71251 1.88775 2.10624 2.48142 2.76510 2.91482 3.26172 3.59637 3.67471 3.93865 3.96287 4.01714 4.02811 4.10418 4.24761 4.26727 4.30470 4.39221 4.46344 4.48225 4.49091 4.51683 4.59585 4.66291 4.78622 4.80956 4.89891 4.90494 4.96946 4.97945 5.02216 5.06664 5.13022 5.15316 5.24288 5.32239 5.36330 5.39340 5.42999 5.56385 5.62150 5.63174 5.78029 6.16534 6.42093 6.44415 6.60005 7.13284 7.15849 7.80489 8.40152 9.15505 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018118 B = 0.002934 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.032878 B = 9542.494434 C =10579.569626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.125 4.125 3 C 0.088 3.912 4 N -0.586 5.586 5 C 0.556 3.444 6 O -0.557 6.557 7 C 0.099 3.901 8 C -0.155 4.155 9 C -0.034 4.034 10 C -0.158 4.158 11 C 0.300 3.700 12 O -0.311 6.311 13 C 0.016 3.984 14 N -0.507 5.507 15 C 0.168 3.832 16 C -0.128 4.128 17 C 0.151 3.849 18 N -0.607 5.607 19 C -0.276 4.276 20 H 0.052 0.948 21 C -0.036 4.036 22 N -0.929 5.929 23 Si 0.969 3.031 24 H -0.272 1.272 25 H -0.287 1.287 26 H -0.280 1.280 27 C 0.192 3.808 28 C -0.140 4.140 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.131 0.869 35 H 0.068 0.932 36 H 0.142 0.858 37 H 0.186 0.814 38 H 0.175 0.825 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.122 0.878 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.022 0.978 47 H 0.253 0.747 48 H 0.006 0.994 49 H 0.037 0.963 50 H 0.058 0.942 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.911 -3.850 23.601 29.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.163 4.163 3 C -0.034 4.034 4 N -0.315 5.315 5 C 0.343 3.657 6 O -0.435 6.435 7 C -0.036 4.036 8 C -0.177 4.177 9 C -0.059 4.059 10 C -0.179 4.179 11 C 0.119 3.881 12 O -0.218 6.218 13 C -0.077 4.077 14 N -0.235 5.235 15 C 0.065 3.935 16 C -0.168 4.168 17 C 0.025 3.975 18 N -0.331 5.331 19 C -0.406 4.406 20 H 0.069 0.931 21 C -0.233 4.233 22 N -0.573 5.573 23 Si 0.795 3.205 24 H -0.197 1.197 25 H -0.213 1.213 26 H -0.206 1.206 27 C 0.066 3.934 28 C -0.180 4.180 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.148 0.852 35 H 0.087 0.913 36 H 0.160 0.840 37 H 0.203 0.797 38 H 0.193 0.807 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.140 0.860 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.040 0.960 47 H 0.062 0.938 48 H 0.024 0.976 49 H 0.056 0.944 50 H 0.076 0.924 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.020 -3.846 22.827 28.732 hybrid contribution 1.596 0.322 -0.644 1.751 sum -15.424 -3.523 22.184 27.247 Atomic orbital electron populations 1.22219 0.93616 1.03009 1.03050 1.21754 0.97280 0.96200 1.01082 1.22676 0.77419 0.98568 1.04695 1.48150 1.07919 1.70207 1.05255 1.18425 0.85439 0.76926 0.84903 1.90793 1.17363 1.50732 1.84638 1.20635 0.89242 1.00126 0.93622 1.22123 1.01496 1.01017 0.93061 1.21836 0.95045 0.92398 0.96628 1.21701 0.92979 1.03153 1.00043 1.20322 0.85944 0.92383 0.89457 1.86263 1.15050 1.84497 1.35998 1.23998 0.95124 1.02053 0.86545 1.67502 1.14849 1.19150 1.21985 1.20855 0.96351 0.94926 0.81329 1.22193 0.99437 0.96899 0.98270 1.20947 0.95197 0.88809 0.92589 1.44094 1.14576 1.00821 1.73590 1.19282 0.88213 1.22056 1.11072 0.93078 1.26131 1.01516 0.99841 0.95790 1.70102 1.33167 1.29063 1.24931 0.85354 0.79948 0.77744 0.77411 1.19736 1.21314 1.20563 1.20384 0.93725 0.88690 0.90581 1.22398 0.99816 0.96844 0.98938 0.92650 0.91648 0.89860 0.93643 0.92431 0.85230 0.91333 0.84023 0.79656 0.80713 0.91344 0.91375 0.86026 0.89098 0.91089 0.93046 0.93083 0.95981 0.93833 0.97552 0.94398 0.92370 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.21 71.98 0.59 -1.55 16 2 C -0.12 -2.49 5.32 30.59 0.16 -2.32 16 3 C 0.09 2.03 4.67 86.38 0.40 2.43 16 4 N -0.59 -18.26 2.43 -800.72 -1.94 -20.21 16 5 C 0.56 18.77 7.06 86.88 0.61 19.38 16 6 O -0.56 -23.30 12.61 -3.77 -0.05 -23.34 16 7 C 0.10 2.59 6.58 41.85 0.28 2.87 16 8 C -0.16 -3.37 9.63 22.62 0.22 -3.15 16 9 C -0.03 -0.46 10.16 22.42 0.23 -0.23 16 10 C -0.16 -2.08 10.04 22.54 0.23 -1.86 16 11 C 0.30 5.35 7.49 84.92 0.64 5.99 16 12 O -0.31 -4.83 10.48 -89.83 -0.94 -5.77 16 13 C 0.02 0.18 7.82 113.37 0.89 1.07 16 14 N -0.51 -10.96 3.81 -298.20 -1.14 -12.09 16 15 C 0.17 6.17 2.50 45.02 0.11 6.28 16 16 C -0.13 -5.07 5.27 30.67 0.16 -4.90 16 17 C 0.15 6.89 6.51 86.36 0.56 7.45 16 18 N -0.61 -33.23 2.94 -699.00 -2.05 -35.28 16 19 C -0.28 -16.40 9.47 84.03 0.80 -15.60 16 20 H 0.05 3.04 7.84 -2.91 -0.02 3.01 16 21 C -0.04 -2.11 5.09 84.86 0.43 -1.68 16 22 N -0.93 -56.92 11.59 21.65 0.25 -56.67 16 23 Si 0.97 46.94 29.56 68.60 2.03 48.96 16 24 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 26 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 27 C 0.19 10.02 5.21 86.36 0.45 10.47 16 28 C -0.14 -6.09 5.26 30.67 0.16 -5.93 16 29 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.84 3.68 -2.39 -0.01 0.83 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.24 6.44 -2.38 -0.02 1.23 16 34 H 0.13 2.84 3.50 -26.25 -0.09 2.75 16 35 H 0.07 1.49 8.04 -2.39 -0.02 1.47 16 36 H 0.14 3.30 7.65 -2.91 -0.02 3.27 16 37 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.07 0.80 5.11 -2.38 -0.01 0.79 16 40 H 0.07 0.82 5.19 -2.39 -0.01 0.81 16 41 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.09 3.12 7.89 -2.39 -0.02 3.10 16 43 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.05 2.33 6.40 -2.39 -0.02 2.32 16 45 H 0.05 2.33 7.93 -2.39 -0.02 2.31 16 46 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 48 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 49 H 0.04 2.21 6.74 -2.39 -0.02 2.20 16 50 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 51 H 0.06 2.79 6.04 -2.39 -0.01 2.78 16 Total: -1.00 -74.87 383.02 3.93 -70.94 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.86 Total: 14.74 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 6.92 Total: 18.72 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -4.88 Total: -124.25 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.99 Total: -29.11 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.96 kcal Total: -74.87 3.93 -70.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266390064.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.174 kcal (2) G-P(sol) polarization free energy of solvation -74.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds