Wall clock time and date at job start Wed Apr 1 2020 04:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47062 * 2 1 4 4 N 1.46500 * 109.47070 * 180.02562 * 3 2 1 5 5 C 1.34774 * 120.00475 * 89.99819 * 4 3 2 6 6 O 1.21279 * 120.00408 * 179.97438 * 5 4 3 7 7 C 1.50704 * 119.99784 * 0.02562 * 5 4 3 8 8 N 1.46492 * 109.47045 * 179.97438 * 7 5 4 9 9 C 1.35762 * 119.62228 * 90.00120 * 8 7 5 10 10 C 1.35353 * 120.69791 * 180.27255 * 9 8 7 11 11 C 1.40191 * 119.95019 * 359.43883 * 10 9 8 12 12 C 1.36398 * 119.26354 * 0.57165 * 11 10 9 13 13 C 1.34659 * 119.62577 * 270.02000 * 8 7 5 14 14 O 1.22063 * 119.98559 * 0.02562 * 13 8 7 15 15 C 1.46502 * 119.99834 * 269.99980 * 4 3 2 16 16 C 1.53044 * 109.46308 * 240.02600 * 15 4 3 17 17 C 1.53188 * 109.31639 * 178.60141 * 16 15 4 18 18 N 1.46926 * 108.76453 * 54.65554 * 17 16 15 19 19 C 1.36937 * 120.62963 * 126.36564 * 18 17 16 20 20 H 1.07999 * 119.99763 * 331.85298 * 19 18 17 21 21 C 1.38816 * 119.99835 * 151.86232 * 19 18 17 22 22 N 1.31616 * 119.99992 * 343.06538 * 21 19 18 23 23 Si 1.86798 * 119.99691 * 163.07275 * 21 19 18 24 24 H 1.48495 * 109.47673 * 59.99657 * 23 21 19 25 25 H 1.48508 * 109.47014 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47177 * 299.99272 * 23 21 19 27 27 C 1.46928 * 118.74104 * 306.38402 * 18 17 16 28 28 C 1.53043 * 109.46256 * 119.97312 * 15 4 3 29 29 H 1.09006 * 109.47267 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46980 * 299.99683 * 1 2 3 31 31 H 1.08998 * 109.47037 * 59.99911 * 1 2 3 32 32 H 1.08997 * 109.46811 * 239.99796 * 2 1 3 33 33 H 1.08998 * 109.47037 * 120.00088 * 2 1 3 34 34 H 1.08997 * 109.47473 * 60.00202 * 3 2 1 35 35 H 1.08998 * 109.47267 * 299.99948 * 3 2 1 36 36 H 1.09003 * 109.47143 * 59.99448 * 7 5 4 37 37 H 1.09000 * 109.46821 * 299.99829 * 7 5 4 38 38 H 1.07993 * 119.65583 * 359.97438 * 9 8 7 39 39 H 1.08007 * 120.02547 * 179.69698 * 10 9 8 40 40 H 1.08008 * 120.36853 * 180.31535 * 11 10 9 41 41 H 1.08008 * 120.34719 * 179.74238 * 12 11 10 42 42 H 1.09003 * 109.46215 * 0.02562 * 15 4 3 43 43 H 1.09000 * 109.49775 * 298.57041 * 16 15 4 44 44 H 1.08999 * 109.49498 * 58.66036 * 16 15 4 45 45 H 1.09003 * 109.60011 * 294.86933 * 17 16 15 46 46 H 1.08995 * 109.70287 * 174.50648 * 17 16 15 47 47 H 0.97003 * 119.99868 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.58836 * 293.82147 * 27 18 17 49 49 H 1.08997 * 109.70591 * 173.46845 * 27 18 17 50 50 H 1.09003 * 109.49493 * 301.33503 * 28 15 4 51 51 H 1.09002 * 109.49549 * 61.39874 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1785 1.4426 -1.1680 6 8 5.3913 1.4430 -1.1685 7 6 3.4245 1.4433 -2.4729 8 7 4.3760 1.4439 -3.5867 9 6 4.8119 0.2640 -4.0976 10 6 5.6951 0.2392 -5.1229 11 6 6.1599 1.4408 -5.6756 12 6 5.7211 2.6252 -5.1607 13 6 4.8087 2.6148 -4.0919 14 8 4.4083 3.6674 -3.6213 15 6 4.2380 1.4423 1.2678 16 6 5.1173 2.6922 1.3488 17 6 5.8555 2.7064 2.6911 18 7 6.5891 1.4422 2.8404 19 6 7.9309 1.4423 3.1136 20 1 8.5480 2.2670 2.7890 21 6 8.4980 0.3822 3.8075 22 7 7.7318 -0.4447 4.4869 23 14 10.3485 0.1293 3.7773 24 1 11.0213 1.3275 4.3402 25 1 10.6987 -1.0626 4.5911 26 1 10.7970 -0.0780 2.3768 27 6 5.8557 0.1778 2.6906 28 6 5.1173 0.1922 1.3485 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.7980 2.3335 -2.5300 37 1 2.7975 0.5536 -2.5306 38 1 4.4538 -0.6646 -3.6784 39 1 6.0384 -0.7057 -5.5178 40 1 6.8608 1.4289 -6.4972 41 1 6.0710 3.5614 -5.5704 42 1 3.5299 1.4417 2.0965 43 1 5.8422 2.6805 0.5349 44 1 4.4930 3.5820 1.2678 45 1 5.1357 2.8092 3.5031 46 1 6.5564 3.5407 2.7162 47 1 8.1281 -1.1852 4.9722 48 1 5.1360 0.0745 3.5026 49 1 6.5552 -0.6577 2.7139 50 1 4.4930 -0.6976 1.2672 51 1 5.8418 0.2040 0.5341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266393551.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:57 Heat of formation + Delta-G solvation = -6.563188 kcal Electronic energy + Delta-G solvation = -32254.869204 eV Core-core repulsion = 28155.737822 eV Total energy + Delta-G solvation = -4099.131381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.59895 -39.96728 -37.12854 -36.90412 -36.11182 -34.65348 -33.39832 -32.06536 -30.34493 -29.98536 -29.61149 -28.31072 -26.29442 -24.94032 -24.02103 -23.10566 -22.26843 -22.06918 -21.74438 -19.68916 -18.96993 -17.77199 -17.44223 -17.22126 -16.61302 -16.45718 -15.77651 -15.28556 -15.22979 -14.82289 -14.75404 -14.51726 -14.22783 -13.85811 -13.70125 -13.56662 -13.35913 -13.04455 -12.82572 -12.57169 -12.52539 -12.40145 -12.31096 -12.04724 -11.97863 -11.89683 -11.58328 -11.38083 -11.10934 -11.03034 -10.87425 -10.64889 -10.54259 -10.26799 -10.10713 -10.03336 -10.02229 -9.65781 -9.51842 -9.25031 -8.50416 -8.29276 -8.07666 -6.60102 -5.72713 -3.13618 0.70978 1.79765 2.33924 2.64827 3.07336 3.44234 3.48442 3.52239 3.60428 4.29661 4.36794 4.42864 4.56555 4.60677 4.69841 4.77125 4.87982 5.00232 5.05100 5.12658 5.15409 5.21228 5.35940 5.38074 5.47848 5.48830 5.61696 5.68668 5.75217 5.79596 5.82429 5.86364 5.91398 6.03667 6.14146 6.18027 6.31067 6.35852 6.39211 6.57811 6.61296 6.76297 6.85929 6.93802 7.02150 7.14457 7.37921 7.55595 7.71741 7.86843 7.95245 8.28118 8.52259 9.28384 9.91692 10.48256 11.36250 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009363 B = 0.003658 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.927670 B = 7652.353880 C = 9434.257833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.144 4.144 3 C 0.103 3.897 4 N -0.606 5.606 5 C 0.499 3.501 6 O -0.505 6.505 7 C 0.069 3.931 8 N -0.479 5.479 9 C 0.144 3.856 10 C -0.234 4.234 11 C -0.015 4.015 12 C -0.243 4.243 13 C 0.520 3.480 14 O -0.552 6.552 15 C 0.162 3.838 16 C -0.147 4.147 17 C 0.151 3.849 18 N -0.589 5.589 19 C -0.247 4.247 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.906 5.906 23 Si 0.901 3.099 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.177 3.823 28 C -0.152 4.152 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.159 0.841 39 H 0.145 0.855 40 H 0.134 0.866 41 H 0.147 0.853 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.046 0.954 45 H 0.015 0.985 46 H 0.055 0.945 47 H 0.253 0.747 48 H 0.015 0.985 49 H 0.088 0.912 50 H 0.043 0.957 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.526 -1.749 -18.133 23.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.183 4.183 3 C -0.020 4.020 4 N -0.339 5.339 5 C 0.284 3.716 6 O -0.380 6.380 7 C -0.056 4.056 8 N -0.189 5.189 9 C 0.017 3.983 10 C -0.257 4.257 11 C -0.037 4.037 12 C -0.264 4.264 13 C 0.322 3.678 14 O -0.434 6.434 15 C 0.060 3.940 16 C -0.187 4.187 17 C 0.024 3.976 18 N -0.312 5.312 19 C -0.377 4.377 20 H 0.081 0.919 21 C -0.196 4.196 22 N -0.551 5.551 23 Si 0.731 3.269 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.050 3.950 28 C -0.192 4.192 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.143 0.857 37 H 0.134 0.866 38 H 0.176 0.824 39 H 0.163 0.837 40 H 0.151 0.849 41 H 0.165 0.835 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.064 0.936 45 H 0.033 0.967 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.033 0.967 49 H 0.106 0.894 50 H 0.062 0.938 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.079 -1.179 -17.669 23.259 hybrid contribution 0.838 -0.363 0.079 0.917 sum -14.241 -1.542 -17.590 22.685 Atomic orbital electron populations 1.21713 0.95050 1.02036 1.01990 1.22007 0.96097 0.97141 1.03057 1.21739 0.79975 0.96921 1.03385 1.48295 1.06119 1.73118 1.06360 1.20470 0.88462 0.77635 0.85043 1.90781 1.13196 1.47446 1.86539 1.21941 0.91976 1.06652 0.85066 1.45062 1.38112 1.07280 1.28431 1.21902 0.93979 0.89225 0.93194 1.20613 1.03839 0.99608 1.01620 1.21424 0.94167 0.91968 0.96146 1.22078 1.03875 1.00126 1.00345 1.17136 0.83298 0.82544 0.84835 1.90954 1.59732 1.29576 1.63140 1.21159 0.93112 0.97353 0.82362 1.22445 0.99272 0.95058 1.01951 1.20837 0.94177 0.90297 0.92278 1.44007 1.05842 0.99403 1.81928 1.19155 0.83269 1.06545 1.28716 0.91863 1.24998 0.97748 0.99938 0.96928 1.70017 1.33998 1.18283 1.32768 0.86379 0.85654 0.77277 0.77556 1.20896 1.21660 1.21046 1.20710 0.94074 0.90609 0.89558 1.22628 0.98927 0.94275 1.03379 0.92405 0.92351 0.92684 0.92097 0.90850 0.89834 0.90801 0.85674 0.86590 0.82382 0.83747 0.84856 0.83532 0.90418 0.90078 0.93561 0.96677 0.92646 0.93715 0.96667 0.89362 0.93847 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.56 16 2 C -0.14 -1.15 6.26 -26.73 -0.17 -1.32 16 3 C 0.10 0.97 5.18 -4.05 -0.02 0.94 16 4 N -0.61 -8.41 2.42 -166.06 -0.40 -8.81 16 5 C 0.50 7.61 7.16 -10.98 -0.08 7.53 16 6 O -0.51 -10.18 12.67 5.56 0.07 -10.11 16 7 C 0.07 0.76 4.37 -5.20 -0.02 0.74 16 8 N -0.48 -5.91 2.07 -121.07 -0.25 -6.17 16 9 C 0.14 1.36 10.28 -16.84 -0.17 1.19 16 10 C -0.23 -1.99 10.01 -39.88 -0.40 -2.39 16 11 C -0.02 -0.14 10.10 -39.51 -0.40 -0.54 16 12 C -0.24 -2.97 9.99 -39.38 -0.39 -3.36 16 13 C 0.52 7.86 7.40 -15.45 -0.11 7.74 16 14 O -0.55 -10.32 16.64 4.86 0.08 -10.24 16 15 C 0.16 2.81 2.51 -67.88 -0.17 2.64 16 16 C -0.15 -2.91 5.26 -26.61 -0.14 -3.05 16 17 C 0.15 3.39 6.52 -3.71 -0.02 3.37 16 18 N -0.59 -15.50 2.99 -172.32 -0.52 -16.02 16 19 C -0.25 -7.13 9.58 -15.06 -0.14 -7.28 16 20 H 0.06 1.82 7.88 -52.49 -0.41 1.41 16 21 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 22 N -0.91 -26.80 11.19 55.49 0.62 -26.18 16 23 Si 0.90 22.55 29.59 -169.99 -5.03 17.52 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 27 C 0.18 4.34 5.30 -3.71 -0.02 4.32 16 28 C -0.15 -3.07 5.27 -26.61 -0.14 -3.21 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.45 7.22 -51.93 -0.38 0.07 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16 35 H 0.07 0.55 6.44 -51.93 -0.33 0.22 16 36 H 0.13 1.35 6.65 -51.93 -0.35 1.01 16 37 H 0.12 0.79 7.06 -51.93 -0.37 0.42 16 38 H 0.16 0.99 8.04 -52.49 -0.42 0.57 16 39 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.15 1.63 8.06 -52.48 -0.42 1.20 16 42 H 0.08 1.27 7.79 -51.93 -0.40 0.86 16 43 H 0.08 1.87 6.21 -51.93 -0.32 1.55 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 47 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 50 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.08 1.77 6.21 -51.93 -0.32 1.45 16 LS Contribution 401.96 15.07 6.06 6.06 Total: -1.00 -37.22 401.96 -9.72 -46.94 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -8.23 Total: 0.28 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -2.12 Total: 6.73 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.55 Total: -57.17 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.15 Total: -20.35 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.03 Total: 17.52 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.22 -9.72 -46.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266393551.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.375 kcal (2) G-P(sol) polarization free energy of solvation -37.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds