Wall clock time and date at job start Wed Apr 1 2020 04:24:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52993 * 109.47062 * 2 1
4 4 N 1.46500 * 109.47070 * 180.02562 * 3 2 1
5 5 C 1.34774 * 120.00475 * 89.99819 * 4 3 2
6 6 O 1.21279 * 120.00408 * 179.97438 * 5 4 3
7 7 C 1.50704 * 119.99784 * 0.02562 * 5 4 3
8 8 N 1.46492 * 109.47045 * 179.97438 * 7 5 4
9 9 C 1.35762 * 119.62228 * 90.00120 * 8 7 5
10 10 C 1.35353 * 120.69791 * 180.27255 * 9 8 7
11 11 C 1.40191 * 119.95019 * 359.43883 * 10 9 8
12 12 C 1.36398 * 119.26354 * 0.57165 * 11 10 9
13 13 C 1.34659 * 119.62577 * 270.02000 * 8 7 5
14 14 O 1.22063 * 119.98559 * 0.02562 * 13 8 7
15 15 C 1.46502 * 119.99834 * 269.99980 * 4 3 2
16 16 C 1.53044 * 109.46308 * 240.02600 * 15 4 3
17 17 C 1.53188 * 109.31639 * 178.60141 * 16 15 4
18 18 N 1.46926 * 108.76453 * 54.65554 * 17 16 15
19 19 C 1.36937 * 120.62963 * 126.36564 * 18 17 16
20 20 H 1.07999 * 119.99763 * 331.85298 * 19 18 17
21 21 C 1.38816 * 119.99835 * 151.86232 * 19 18 17
22 22 N 1.31616 * 119.99992 * 343.06538 * 21 19 18
23 23 Si 1.86798 * 119.99691 * 163.07275 * 21 19 18
24 24 H 1.48495 * 109.47673 * 59.99657 * 23 21 19
25 25 H 1.48508 * 109.47014 * 179.97438 * 23 21 19
26 26 H 1.48503 * 109.47177 * 299.99272 * 23 21 19
27 27 C 1.46928 * 118.74104 * 306.38402 * 18 17 16
28 28 C 1.53043 * 109.46256 * 119.97312 * 15 4 3
29 29 H 1.09006 * 109.47267 * 179.97438 * 1 2 3
30 30 H 1.08999 * 109.46980 * 299.99683 * 1 2 3
31 31 H 1.08998 * 109.47037 * 59.99911 * 1 2 3
32 32 H 1.08997 * 109.46811 * 239.99796 * 2 1 3
33 33 H 1.08998 * 109.47037 * 120.00088 * 2 1 3
34 34 H 1.08997 * 109.47473 * 60.00202 * 3 2 1
35 35 H 1.08998 * 109.47267 * 299.99948 * 3 2 1
36 36 H 1.09003 * 109.47143 * 59.99448 * 7 5 4
37 37 H 1.09000 * 109.46821 * 299.99829 * 7 5 4
38 38 H 1.07993 * 119.65583 * 359.97438 * 9 8 7
39 39 H 1.08007 * 120.02547 * 179.69698 * 10 9 8
40 40 H 1.08008 * 120.36853 * 180.31535 * 11 10 9
41 41 H 1.08008 * 120.34719 * 179.74238 * 12 11 10
42 42 H 1.09003 * 109.46215 * 0.02562 * 15 4 3
43 43 H 1.09000 * 109.49775 * 298.57041 * 16 15 4
44 44 H 1.08999 * 109.49498 * 58.66036 * 16 15 4
45 45 H 1.09003 * 109.60011 * 294.86933 * 17 16 15
46 46 H 1.08995 * 109.70287 * 174.50648 * 17 16 15
47 47 H 0.97003 * 119.99868 * 180.02562 * 22 21 19
48 48 H 1.09001 * 109.58836 * 293.82147 * 27 18 17
49 49 H 1.08997 * 109.70591 * 173.46845 * 27 18 17
50 50 H 1.09003 * 109.49493 * 301.33503 * 28 15 4
51 51 H 1.09002 * 109.49549 * 61.39874 * 28 15 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 3.5050 1.4424 -0.0006
5 6 4.1785 1.4426 -1.1680
6 8 5.3913 1.4430 -1.1685
7 6 3.4245 1.4433 -2.4729
8 7 4.3760 1.4439 -3.5867
9 6 4.8119 0.2640 -4.0976
10 6 5.6951 0.2392 -5.1229
11 6 6.1599 1.4408 -5.6756
12 6 5.7211 2.6252 -5.1607
13 6 4.8087 2.6148 -4.0919
14 8 4.4083 3.6674 -3.6213
15 6 4.2380 1.4423 1.2678
16 6 5.1173 2.6922 1.3488
17 6 5.8555 2.7064 2.6911
18 7 6.5891 1.4422 2.8404
19 6 7.9309 1.4423 3.1136
20 1 8.5480 2.2670 2.7890
21 6 8.4980 0.3822 3.8075
22 7 7.7318 -0.4447 4.4869
23 14 10.3485 0.1293 3.7773
24 1 11.0213 1.3275 4.3402
25 1 10.6987 -1.0626 4.5911
26 1 10.7970 -0.0780 2.3768
27 6 5.8557 0.1778 2.6906
28 6 5.1173 0.1922 1.3485
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 1.6767 1.9563 0.8900
35 1 1.6767 1.9563 -0.8900
36 1 2.7980 2.3335 -2.5300
37 1 2.7975 0.5536 -2.5306
38 1 4.4538 -0.6646 -3.6784
39 1 6.0384 -0.7057 -5.5178
40 1 6.8608 1.4289 -6.4972
41 1 6.0710 3.5614 -5.5704
42 1 3.5299 1.4417 2.0965
43 1 5.8422 2.6805 0.5349
44 1 4.4930 3.5820 1.2678
45 1 5.1357 2.8092 3.5031
46 1 6.5564 3.5407 2.7162
47 1 8.1281 -1.1852 4.9722
48 1 5.1360 0.0745 3.5026
49 1 6.5552 -0.6577 2.7139
50 1 4.4930 -0.6976 1.2672
51 1 5.8418 0.2040 0.5341
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001266393551.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:24:57
Heat of formation + Delta-G solvation = -6.563188 kcal
Electronic energy + Delta-G solvation = -32254.869204 eV
Core-core repulsion = 28155.737822 eV
Total energy + Delta-G solvation = -4099.131381 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.40 seconds
Orbital eigenvalues (eV)
-41.59895 -39.96728 -37.12854 -36.90412 -36.11182 -34.65348 -33.39832 -32.06536
-30.34493 -29.98536 -29.61149 -28.31072 -26.29442 -24.94032 -24.02103 -23.10566
-22.26843 -22.06918 -21.74438 -19.68916 -18.96993 -17.77199 -17.44223 -17.22126
-16.61302 -16.45718 -15.77651 -15.28556 -15.22979 -14.82289 -14.75404 -14.51726
-14.22783 -13.85811 -13.70125 -13.56662 -13.35913 -13.04455 -12.82572 -12.57169
-12.52539 -12.40145 -12.31096 -12.04724 -11.97863 -11.89683 -11.58328 -11.38083
-11.10934 -11.03034 -10.87425 -10.64889 -10.54259 -10.26799 -10.10713 -10.03336
-10.02229 -9.65781 -9.51842 -9.25031 -8.50416 -8.29276 -8.07666 -6.60102
-5.72713 -3.13618 0.70978 1.79765 2.33924 2.64827 3.07336 3.44234
3.48442 3.52239 3.60428 4.29661 4.36794 4.42864 4.56555 4.60677
4.69841 4.77125 4.87982 5.00232 5.05100 5.12658 5.15409 5.21228
5.35940 5.38074 5.47848 5.48830 5.61696 5.68668 5.75217 5.79596
5.82429 5.86364 5.91398 6.03667 6.14146 6.18027 6.31067 6.35852
6.39211 6.57811 6.61296 6.76297 6.85929 6.93802 7.02150 7.14457
7.37921 7.55595 7.71741 7.86843 7.95245 8.28118 8.52259 9.28384
9.91692 10.48256 11.36250
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.009363 B = 0.003658 C = 0.002967
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2989.927670 B = 7652.353880 C = 9434.257833
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.144 4.144
3 C 0.103 3.897
4 N -0.606 5.606
5 C 0.499 3.501
6 O -0.505 6.505
7 C 0.069 3.931
8 N -0.479 5.479
9 C 0.144 3.856
10 C -0.234 4.234
11 C -0.015 4.015
12 C -0.243 4.243
13 C 0.520 3.480
14 O -0.552 6.552
15 C 0.162 3.838
16 C -0.147 4.147
17 C 0.151 3.849
18 N -0.589 5.589
19 C -0.247 4.247
20 H 0.064 0.936
21 C 0.002 3.998
22 N -0.906 5.906
23 Si 0.901 3.099
24 H -0.283 1.283
25 H -0.291 1.291
26 H -0.284 1.284
27 C 0.177 3.823
28 C -0.152 4.152
29 H 0.057 0.943
30 H 0.057 0.943
31 H 0.054 0.946
32 H 0.060 0.940
33 H 0.073 0.927
34 H 0.083 0.917
35 H 0.074 0.926
36 H 0.125 0.875
37 H 0.116 0.884
38 H 0.159 0.841
39 H 0.145 0.855
40 H 0.134 0.866
41 H 0.147 0.853
42 H 0.078 0.922
43 H 0.081 0.919
44 H 0.046 0.954
45 H 0.015 0.985
46 H 0.055 0.945
47 H 0.253 0.747
48 H 0.015 0.985
49 H 0.088 0.912
50 H 0.043 0.957
51 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.526 -1.749 -18.133 23.936
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.183 4.183
3 C -0.020 4.020
4 N -0.339 5.339
5 C 0.284 3.716
6 O -0.380 6.380
7 C -0.056 4.056
8 N -0.189 5.189
9 C 0.017 3.983
10 C -0.257 4.257
11 C -0.037 4.037
12 C -0.264 4.264
13 C 0.322 3.678
14 O -0.434 6.434
15 C 0.060 3.940
16 C -0.187 4.187
17 C 0.024 3.976
18 N -0.312 5.312
19 C -0.377 4.377
20 H 0.081 0.919
21 C -0.196 4.196
22 N -0.551 5.551
23 Si 0.731 3.269
24 H -0.209 1.209
25 H -0.217 1.217
26 H -0.210 1.210
27 C 0.050 3.950
28 C -0.192 4.192
29 H 0.076 0.924
30 H 0.076 0.924
31 H 0.073 0.927
32 H 0.079 0.921
33 H 0.092 0.908
34 H 0.102 0.898
35 H 0.092 0.908
36 H 0.143 0.857
37 H 0.134 0.866
38 H 0.176 0.824
39 H 0.163 0.837
40 H 0.151 0.849
41 H 0.165 0.835
42 H 0.096 0.904
43 H 0.099 0.901
44 H 0.064 0.936
45 H 0.033 0.967
46 H 0.074 0.926
47 H 0.063 0.937
48 H 0.033 0.967
49 H 0.106 0.894
50 H 0.062 0.938
51 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -15.079 -1.179 -17.669 23.259
hybrid contribution 0.838 -0.363 0.079 0.917
sum -14.241 -1.542 -17.590 22.685
Atomic orbital electron populations
1.21713 0.95050 1.02036 1.01990 1.22007 0.96097 0.97141 1.03057
1.21739 0.79975 0.96921 1.03385 1.48295 1.06119 1.73118 1.06360
1.20470 0.88462 0.77635 0.85043 1.90781 1.13196 1.47446 1.86539
1.21941 0.91976 1.06652 0.85066 1.45062 1.38112 1.07280 1.28431
1.21902 0.93979 0.89225 0.93194 1.20613 1.03839 0.99608 1.01620
1.21424 0.94167 0.91968 0.96146 1.22078 1.03875 1.00126 1.00345
1.17136 0.83298 0.82544 0.84835 1.90954 1.59732 1.29576 1.63140
1.21159 0.93112 0.97353 0.82362 1.22445 0.99272 0.95058 1.01951
1.20837 0.94177 0.90297 0.92278 1.44007 1.05842 0.99403 1.81928
1.19155 0.83269 1.06545 1.28716 0.91863 1.24998 0.97748 0.99938
0.96928 1.70017 1.33998 1.18283 1.32768 0.86379 0.85654 0.77277
0.77556 1.20896 1.21660 1.21046 1.20710 0.94074 0.90609 0.89558
1.22628 0.98927 0.94275 1.03379 0.92405 0.92351 0.92684 0.92097
0.90850 0.89834 0.90801 0.85674 0.86590 0.82382 0.83747 0.84856
0.83532 0.90418 0.90078 0.93561 0.96677 0.92646 0.93715 0.96667
0.89362 0.93847 0.90472
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.92 9.91 37.16 0.37 -0.56 16
2 C -0.14 -1.15 6.26 -26.73 -0.17 -1.32 16
3 C 0.10 0.97 5.18 -4.05 -0.02 0.94 16
4 N -0.61 -8.41 2.42 -166.06 -0.40 -8.81 16
5 C 0.50 7.61 7.16 -10.98 -0.08 7.53 16
6 O -0.51 -10.18 12.67 5.56 0.07 -10.11 16
7 C 0.07 0.76 4.37 -5.20 -0.02 0.74 16
8 N -0.48 -5.91 2.07 -121.07 -0.25 -6.17 16
9 C 0.14 1.36 10.28 -16.84 -0.17 1.19 16
10 C -0.23 -1.99 10.01 -39.88 -0.40 -2.39 16
11 C -0.02 -0.14 10.10 -39.51 -0.40 -0.54 16
12 C -0.24 -2.97 9.99 -39.38 -0.39 -3.36 16
13 C 0.52 7.86 7.40 -15.45 -0.11 7.74 16
14 O -0.55 -10.32 16.64 4.86 0.08 -10.24 16
15 C 0.16 2.81 2.51 -67.88 -0.17 2.64 16
16 C -0.15 -2.91 5.26 -26.61 -0.14 -3.05 16
17 C 0.15 3.39 6.52 -3.71 -0.02 3.37 16
18 N -0.59 -15.50 2.99 -172.32 -0.52 -16.02 16
19 C -0.25 -7.13 9.58 -15.06 -0.14 -7.28 16
20 H 0.06 1.82 7.88 -52.49 -0.41 1.41 16
21 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16
22 N -0.91 -26.80 11.19 55.49 0.62 -26.18 16
23 Si 0.90 22.55 29.59 -169.99 -5.03 17.52 16
24 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16
25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
26 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16
27 C 0.18 4.34 5.30 -3.71 -0.02 4.32 16
28 C -0.15 -3.07 5.27 -26.61 -0.14 -3.21 16
29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16
32 H 0.06 0.45 7.22 -51.93 -0.38 0.07 16
33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
34 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16
35 H 0.07 0.55 6.44 -51.93 -0.33 0.22 16
36 H 0.13 1.35 6.65 -51.93 -0.35 1.01 16
37 H 0.12 0.79 7.06 -51.93 -0.37 0.42 16
38 H 0.16 0.99 8.04 -52.49 -0.42 0.57 16
39 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16
40 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16
41 H 0.15 1.63 8.06 -52.48 -0.42 1.20 16
42 H 0.08 1.27 7.79 -51.93 -0.40 0.86 16
43 H 0.08 1.87 6.21 -51.93 -0.32 1.55 16
44 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16
45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16
46 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16
47 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16
48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
49 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16
50 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16
51 H 0.08 1.77 6.21 -51.93 -0.32 1.45 16
LS Contribution 401.96 15.07 6.06 6.06
Total: -1.00 -37.22 401.96 -9.72 -46.94
By element:
Atomic # 1 Polarization: 8.51 SS G_CDS: -8.23 Total: 0.28 kcal
Atomic # 6 Polarization: 8.86 SS G_CDS: -2.12 Total: 6.73 kcal
Atomic # 7 Polarization: -56.63 SS G_CDS: -0.55 Total: -57.17 kcal
Atomic # 8 Polarization: -20.50 SS G_CDS: 0.15 Total: -20.35 kcal
Atomic # 14 Polarization: 22.55 SS G_CDS: -5.03 Total: 17.52 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -37.22 -9.72 -46.94 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001266393551.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.375 kcal
(2) G-P(sol) polarization free energy of solvation -37.215 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.160 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.938 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.563 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.41 seconds