Wall clock time and date at job start Wed Apr 1 2020 04:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47062 * 2 1 4 4 N 1.46500 * 109.47070 * 180.02562 * 3 2 1 5 5 C 1.34774 * 120.00475 * 89.99819 * 4 3 2 6 6 O 1.21279 * 120.00408 * 179.97438 * 5 4 3 7 7 C 1.50704 * 119.99784 * 0.02562 * 5 4 3 8 8 N 1.46492 * 109.47045 * 179.97438 * 7 5 4 9 9 C 1.35762 * 119.62228 * 90.00120 * 8 7 5 10 10 C 1.35353 * 120.69791 * 180.27255 * 9 8 7 11 11 C 1.40191 * 119.95019 * 359.43883 * 10 9 8 12 12 C 1.36398 * 119.26354 * 0.57165 * 11 10 9 13 13 C 1.34659 * 119.62577 * 270.02000 * 8 7 5 14 14 O 1.22063 * 119.98559 * 0.02562 * 13 8 7 15 15 C 1.46502 * 119.99834 * 269.99980 * 4 3 2 16 16 C 1.53044 * 109.46308 * 240.02600 * 15 4 3 17 17 C 1.53188 * 109.31639 * 178.60141 * 16 15 4 18 18 N 1.46926 * 108.76453 * 54.65554 * 17 16 15 19 19 C 1.36937 * 120.62963 * 126.36564 * 18 17 16 20 20 H 1.07999 * 119.99763 * 331.85298 * 19 18 17 21 21 C 1.38816 * 119.99835 * 151.86232 * 19 18 17 22 22 N 1.31616 * 119.99992 * 343.06538 * 21 19 18 23 23 Si 1.86798 * 119.99691 * 163.07275 * 21 19 18 24 24 H 1.48495 * 109.47673 * 59.99657 * 23 21 19 25 25 H 1.48508 * 109.47014 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47177 * 299.99272 * 23 21 19 27 27 C 1.46928 * 118.74104 * 306.38402 * 18 17 16 28 28 C 1.53043 * 109.46256 * 119.97312 * 15 4 3 29 29 H 1.09006 * 109.47267 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46980 * 299.99683 * 1 2 3 31 31 H 1.08998 * 109.47037 * 59.99911 * 1 2 3 32 32 H 1.08997 * 109.46811 * 239.99796 * 2 1 3 33 33 H 1.08998 * 109.47037 * 120.00088 * 2 1 3 34 34 H 1.08997 * 109.47473 * 60.00202 * 3 2 1 35 35 H 1.08998 * 109.47267 * 299.99948 * 3 2 1 36 36 H 1.09003 * 109.47143 * 59.99448 * 7 5 4 37 37 H 1.09000 * 109.46821 * 299.99829 * 7 5 4 38 38 H 1.07993 * 119.65583 * 359.97438 * 9 8 7 39 39 H 1.08007 * 120.02547 * 179.69698 * 10 9 8 40 40 H 1.08008 * 120.36853 * 180.31535 * 11 10 9 41 41 H 1.08008 * 120.34719 * 179.74238 * 12 11 10 42 42 H 1.09003 * 109.46215 * 0.02562 * 15 4 3 43 43 H 1.09000 * 109.49775 * 298.57041 * 16 15 4 44 44 H 1.08999 * 109.49498 * 58.66036 * 16 15 4 45 45 H 1.09003 * 109.60011 * 294.86933 * 17 16 15 46 46 H 1.08995 * 109.70287 * 174.50648 * 17 16 15 47 47 H 0.97003 * 119.99868 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.58836 * 293.82147 * 27 18 17 49 49 H 1.08997 * 109.70591 * 173.46845 * 27 18 17 50 50 H 1.09003 * 109.49493 * 301.33503 * 28 15 4 51 51 H 1.09002 * 109.49549 * 61.39874 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1785 1.4426 -1.1680 6 8 5.3913 1.4430 -1.1685 7 6 3.4245 1.4433 -2.4729 8 7 4.3760 1.4439 -3.5867 9 6 4.8119 0.2640 -4.0976 10 6 5.6951 0.2392 -5.1229 11 6 6.1599 1.4408 -5.6756 12 6 5.7211 2.6252 -5.1607 13 6 4.8087 2.6148 -4.0919 14 8 4.4083 3.6674 -3.6213 15 6 4.2380 1.4423 1.2678 16 6 5.1173 2.6922 1.3488 17 6 5.8555 2.7064 2.6911 18 7 6.5891 1.4422 2.8404 19 6 7.9309 1.4423 3.1136 20 1 8.5480 2.2670 2.7890 21 6 8.4980 0.3822 3.8075 22 7 7.7318 -0.4447 4.4869 23 14 10.3485 0.1293 3.7773 24 1 11.0213 1.3275 4.3402 25 1 10.6987 -1.0626 4.5911 26 1 10.7970 -0.0780 2.3768 27 6 5.8557 0.1778 2.6906 28 6 5.1173 0.1922 1.3485 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.7980 2.3335 -2.5300 37 1 2.7975 0.5536 -2.5306 38 1 4.4538 -0.6646 -3.6784 39 1 6.0384 -0.7057 -5.5178 40 1 6.8608 1.4289 -6.4972 41 1 6.0710 3.5614 -5.5704 42 1 3.5299 1.4417 2.0965 43 1 5.8422 2.6805 0.5349 44 1 4.4930 3.5820 1.2678 45 1 5.1357 2.8092 3.5031 46 1 6.5564 3.5407 2.7162 47 1 8.1281 -1.1852 4.9722 48 1 5.1360 0.0745 3.5026 49 1 6.5552 -0.6577 2.7139 50 1 4.4930 -0.6976 1.2672 51 1 5.8418 0.2040 0.5341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266393551.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:56 Heat of formation + Delta-G solvation = -29.736290 kcal Electronic energy + Delta-G solvation = -32255.874065 eV Core-core repulsion = 28155.737822 eV Total energy + Delta-G solvation = -4100.136242 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.55023 -41.17054 -38.74822 -37.94978 -37.24088 -35.62193 -34.83601 -33.45901 -31.97920 -31.43770 -30.83376 -29.42219 -27.35323 -26.51819 -24.93533 -24.32603 -23.92031 -23.39967 -22.61503 -21.24144 -20.26366 -18.95814 -18.63874 -18.31858 -17.92948 -17.46281 -17.05632 -16.69539 -16.34718 -16.21768 -15.70841 -15.53526 -15.39417 -15.30624 -15.09792 -14.89976 -14.73254 -14.62478 -14.16515 -13.97020 -13.52036 -13.30811 -13.25780 -13.11145 -13.03702 -12.96216 -12.76926 -12.73253 -12.65825 -12.62023 -12.24095 -12.20682 -12.01125 -11.84848 -11.62872 -11.45268 -11.39526 -11.21695 -11.07144 -10.63359 -10.47582 -9.62901 -8.97236 -8.71182 -7.91533 -5.35763 -0.09384 0.93755 1.41692 1.44395 1.45868 1.51816 1.51937 2.02074 2.47908 2.70701 3.22820 3.34860 3.62853 3.64254 3.74482 3.89912 3.96093 3.99505 4.01986 4.13656 4.18369 4.22977 4.30229 4.35728 4.41537 4.47612 4.51225 4.59639 4.62686 4.70769 4.79792 4.84350 4.90530 4.98603 5.03092 5.04878 5.11698 5.17499 5.25033 5.31595 5.36914 5.38439 5.46868 5.50893 5.59040 5.62855 5.65063 5.74697 6.05218 6.35789 6.40749 6.95485 7.11835 7.13927 7.82128 8.33356 9.14855 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009363 B = 0.003658 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.927670 B = 7652.353880 C = 9434.257833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.097 3.903 4 N -0.600 5.600 5 C 0.492 3.508 6 O -0.563 6.563 7 C 0.075 3.925 8 N -0.481 5.481 9 C 0.133 3.867 10 C -0.232 4.232 11 C 0.006 3.994 12 C -0.285 4.285 13 C 0.499 3.501 14 O -0.611 6.611 15 C 0.171 3.829 16 C -0.134 4.134 17 C 0.149 3.851 18 N -0.609 5.609 19 C -0.269 4.269 20 H 0.054 0.946 21 C -0.043 4.043 22 N -0.929 5.929 23 Si 0.964 3.036 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.184 3.816 28 C -0.133 4.133 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.167 0.833 38 H 0.196 0.804 39 H 0.182 0.818 40 H 0.168 0.832 41 H 0.144 0.856 42 H 0.097 0.903 43 H 0.045 0.955 44 H 0.067 0.933 45 H 0.027 0.973 46 H 0.045 0.955 47 H 0.252 0.748 48 H 0.007 0.993 49 H 0.052 0.948 50 H 0.067 0.933 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.265 -3.505 -19.892 26.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C -0.025 4.025 4 N -0.332 5.332 5 C 0.280 3.720 6 O -0.441 6.441 7 C -0.049 4.049 8 N -0.190 5.190 9 C 0.007 3.993 10 C -0.254 4.254 11 C -0.015 4.015 12 C -0.306 4.306 13 C 0.304 3.696 14 O -0.498 6.498 15 C 0.068 3.932 16 C -0.173 4.173 17 C 0.023 3.977 18 N -0.333 5.333 19 C -0.399 4.399 20 H 0.072 0.928 21 C -0.239 4.239 22 N -0.575 5.575 23 Si 0.792 3.208 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.211 1.211 27 C 0.058 3.942 28 C -0.173 4.173 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.146 0.854 37 H 0.185 0.815 38 H 0.212 0.788 39 H 0.199 0.801 40 H 0.186 0.814 41 H 0.162 0.838 42 H 0.114 0.886 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.025 0.975 49 H 0.070 0.930 50 H 0.085 0.915 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.875 -2.961 -19.451 25.921 hybrid contribution 1.380 0.119 0.594 1.507 sum -15.495 -2.842 -18.857 24.572 Atomic orbital electron populations 1.21683 0.93416 1.02539 1.02737 1.21949 0.97358 0.95722 1.02740 1.22100 0.76728 0.98530 1.05120 1.48233 1.07952 1.72330 1.04700 1.21234 0.88050 0.76225 0.86529 1.90768 1.15849 1.49999 1.87454 1.22090 0.91421 1.09144 0.82286 1.45112 1.38023 1.07518 1.28307 1.22671 0.93988 0.89336 0.93335 1.21179 1.02645 1.00734 1.00793 1.21877 0.92848 0.91077 0.95744 1.22122 1.05521 1.01601 1.01380 1.17610 0.83759 0.82724 0.85525 1.90895 1.62198 1.31485 1.65262 1.20813 0.93003 0.94435 0.84932 1.22220 0.98920 0.97467 0.98740 1.20938 0.94152 0.88507 0.94126 1.44244 1.05604 1.01077 1.82335 1.19386 0.84825 1.06758 1.28930 0.92840 1.25702 1.01862 0.99647 0.96703 1.70146 1.35531 1.18534 1.33275 0.85404 0.80706 0.77407 0.77324 1.20080 1.21053 1.21115 1.20517 0.93143 0.88868 0.91652 1.22309 0.98644 0.96949 0.99349 0.92046 0.92476 0.91138 0.90973 0.92704 0.89092 0.88224 0.85391 0.81539 0.78750 0.80080 0.81438 0.83846 0.88553 0.93600 0.91452 0.95471 0.93668 0.93891 0.97500 0.92999 0.91453 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.55 16 2 C -0.14 -1.73 6.26 30.59 0.19 -1.54 16 3 C 0.10 1.49 5.18 86.38 0.45 1.94 16 4 N -0.60 -15.63 2.42 -797.68 -1.93 -17.56 16 5 C 0.49 14.51 7.16 87.66 0.63 15.14 16 6 O -0.56 -23.10 12.67 -3.03 -0.04 -23.14 16 7 C 0.08 1.49 4.37 85.64 0.37 1.87 16 8 N -0.48 -11.25 2.07 -655.08 -1.36 -12.61 16 9 C 0.13 2.11 10.28 83.42 0.86 2.97 16 10 C -0.23 -3.14 10.01 22.08 0.22 -2.92 16 11 C 0.01 0.10 10.10 22.31 0.23 0.33 16 12 C -0.28 -7.07 9.99 22.40 0.22 -6.84 16 13 C 0.50 15.43 7.40 84.82 0.63 16.05 16 14 O -0.61 -24.08 16.64 -5.52 -0.09 -24.17 16 15 C 0.17 5.82 2.51 45.02 0.11 5.93 16 16 C -0.13 -5.35 5.26 30.67 0.16 -5.19 16 17 C 0.15 6.84 6.52 86.36 0.56 7.40 16 18 N -0.61 -33.11 2.99 -699.10 -2.09 -35.20 16 19 C -0.27 -16.05 9.58 84.03 0.81 -15.25 16 20 H 0.05 3.21 7.88 -2.91 -0.02 3.19 16 21 C -0.04 -2.54 4.92 84.86 0.42 -2.13 16 22 N -0.93 -56.25 11.19 21.65 0.24 -56.00 16 23 Si 0.96 47.26 29.59 68.60 2.03 49.29 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 27 C 0.18 9.30 5.30 86.36 0.46 9.76 16 28 C -0.13 -5.37 5.27 30.67 0.16 -5.21 16 29 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.74 7.22 -2.39 -0.02 0.72 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 1.32 7.92 -2.39 -0.02 1.31 16 35 H 0.10 1.09 6.44 -2.39 -0.02 1.08 16 36 H 0.13 2.54 6.65 -2.39 -0.02 2.52 16 37 H 0.17 1.50 7.06 -2.39 -0.02 1.48 16 38 H 0.20 1.54 8.04 -2.91 -0.02 1.51 16 39 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 40 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 41 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 42 H 0.10 2.96 7.79 -2.39 -0.02 2.94 16 43 H 0.05 2.19 6.21 -2.39 -0.01 2.18 16 44 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.04 2.11 7.93 -2.39 -0.02 2.09 16 47 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 48 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 49 H 0.05 2.97 6.06 -2.39 -0.01 2.96 16 50 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 51 H 0.05 2.26 6.21 -2.39 -0.01 2.24 16 Total: -1.00 -88.34 401.96 4.86 -83.48 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.91 Total: 14.15 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 7.19 Total: 21.76 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -5.14 Total: -121.37 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.13 Total: -47.32 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -88.34 4.86 -83.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266393551.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.746 kcal (2) G-P(sol) polarization free energy of solvation -88.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds