Wall clock time and date at job start Wed Apr 1 2020 04:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47034 * 2 1 4 4 N 1.46498 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.36930 * 119.99940 * 275.40829 * 4 3 2 6 6 H 1.08006 * 120.00108 * 40.38036 * 5 4 3 7 7 C 1.38810 * 119.99973 * 220.37192 * 5 4 3 8 8 N 1.31616 * 120.00397 * 8.47027 * 7 5 4 9 9 Si 1.86807 * 119.99898 * 188.46761 * 7 5 4 10 10 H 1.48496 * 109.47205 * 60.00397 * 9 7 5 11 11 H 1.48506 * 109.46832 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47096 * 299.99852 * 9 7 5 13 13 C 1.46495 * 119.99788 * 95.40726 * 4 3 2 14 14 C 1.52998 * 109.47409 * 269.99983 * 13 4 3 15 15 N 1.46508 * 109.47126 * 180.02562 * 14 13 4 16 16 C 1.34779 * 119.99501 * 180.02562 * 15 14 13 17 17 O 1.21543 * 120.00272 * 359.97438 * 16 15 14 18 18 C 1.47857 * 119.99559 * 179.97438 * 16 15 14 19 19 C 1.39623 * 120.11237 * 6.38045 * 18 16 15 20 20 C 1.37979 * 119.99559 * 179.97438 * 19 18 16 21 21 C 1.38249 * 120.22420 * 0.02562 * 20 19 18 22 22 C 1.38944 * 120.22557 * 359.97438 * 21 20 19 23 23 N 1.39955 * 120.00162 * 180.28249 * 22 21 20 24 24 C 1.34775 * 120.00089 * 22.24911 * 23 22 21 25 25 C 1.50701 * 120.00036 * 185.46164 * 24 23 22 26 26 O 1.21284 * 120.00080 * 5.45618 * 24 23 22 27 27 C 1.38642 * 119.99845 * 0.02562 * 22 21 20 28 28 C 1.50703 * 120.10896 * 179.97438 * 27 22 21 29 29 H 1.09009 * 109.46893 * 60.00169 * 1 2 3 30 30 H 1.08994 * 109.46782 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47330 * 300.00422 * 1 2 3 32 32 H 1.08995 * 109.47330 * 239.99577 * 2 1 3 33 33 H 1.08999 * 109.46656 * 119.99358 * 2 1 3 34 34 H 1.09004 * 109.47203 * 59.99745 * 3 2 1 35 35 H 1.08999 * 109.46752 * 300.00001 * 3 2 1 36 36 H 0.96994 * 120.00373 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47358 * 150.00101 * 13 4 3 38 38 H 1.08997 * 109.47368 * 30.00603 * 13 4 3 39 39 H 1.09001 * 109.47028 * 60.00234 * 14 13 4 40 40 H 1.09001 * 109.46911 * 300.00031 * 14 13 4 41 41 H 0.96993 * 119.99877 * 359.97438 * 15 14 13 42 42 H 1.08000 * 119.99741 * 359.97438 * 19 18 16 43 43 H 1.08002 * 119.88881 * 180.02562 * 20 19 18 44 44 H 1.08000 * 119.88775 * 180.02562 * 21 20 19 45 45 H 0.97003 * 119.99712 * 202.25049 * 23 22 21 46 46 H 1.08995 * 109.47160 * 59.99780 * 25 24 23 47 47 H 1.09003 * 109.47214 * 179.97438 * 25 24 23 48 48 H 1.08999 * 109.47323 * 300.00023 * 25 24 23 49 49 H 1.09004 * 109.47090 * 96.20077 * 28 27 22 50 50 H 1.08999 * 109.46764 * 216.20217 * 28 27 22 51 51 H 1.08998 * 109.47146 * 336.20121 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.3310 1.1815 6 1 3.8418 0.6502 1.9446 7 6 5.3292 2.0928 1.3978 8 7 5.6598 3.0394 0.5452 9 14 6.3944 1.7743 2.8990 10 1 6.8979 0.3778 2.8615 11 1 7.5432 2.7154 2.8994 12 1 5.5886 1.9772 4.1298 13 6 4.2380 1.5620 -1.2622 14 6 4.4933 0.1675 -1.8375 15 7 5.2268 0.2869 -3.1001 16 6 5.5637 -0.8202 -3.7910 17 8 5.2593 -1.9177 -3.3664 18 6 6.3035 -0.6997 -5.0655 19 6 6.7705 0.5460 -5.4892 20 6 7.4611 0.6557 -6.6787 21 6 7.6927 -0.4648 -7.4548 22 6 7.2321 -1.7090 -7.0420 23 7 7.4744 -2.8411 -7.8284 24 6 8.4919 -2.8425 -8.7122 25 6 8.6781 -4.0114 -9.6449 26 8 9.2576 -1.9030 -8.7569 27 6 6.5372 -1.8298 -5.8484 28 6 6.0360 -3.1780 -5.3985 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 6.4562 3.5720 0.6965 37 1 5.1903 2.0612 -1.0837 38 1 3.6493 2.1450 -1.9703 39 1 3.5409 -0.3318 -2.0161 40 1 5.0821 -0.4155 -1.1294 41 1 5.4693 1.1627 -3.4391 42 1 6.5912 1.4237 -4.8859 43 1 7.8219 1.6200 -7.0046 44 1 8.2342 -0.3728 -8.3847 45 1 6.9099 -3.6247 -7.7373 46 1 7.7898 -4.1259 -10.2659 47 1 9.5453 -3.8341 -10.2810 48 1 8.8338 -4.9197 -9.0627 49 1 6.7512 -3.6180 -4.7035 50 1 5.0725 -3.0604 -4.9027 51 1 5.9220 -3.8305 -6.2641 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266575635.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:08 Heat of formation + Delta-G solvation = -48.543577 kcal Electronic energy + Delta-G solvation = -30314.922332 eV Core-core repulsion = 26213.970545 eV Total energy + Delta-G solvation = -4100.951787 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.94679 -40.86548 -39.12672 -38.18816 -36.19635 -35.71114 -34.61084 -33.44800 -32.71907 -32.01437 -30.36216 -29.16286 -27.89242 -27.32185 -25.56091 -24.60089 -22.93131 -22.33573 -22.19494 -21.84347 -21.02069 -19.37110 -18.58228 -18.19340 -17.26013 -17.12885 -17.01729 -16.81798 -16.47793 -16.25208 -15.89887 -15.65366 -15.43938 -15.17423 -14.81511 -14.72089 -14.54606 -14.36979 -14.23142 -14.06149 -13.51265 -13.35453 -13.33442 -13.25845 -13.15761 -13.08341 -12.85647 -12.79800 -12.65113 -12.50968 -12.28434 -12.21270 -11.97411 -11.87009 -11.69615 -11.64507 -11.28547 -10.97038 -10.64028 -10.56994 -10.13357 -9.75657 -9.10423 -8.52941 -7.78466 -5.55324 -0.19653 0.18419 1.45645 1.47307 1.47664 1.53262 1.88139 1.96592 2.24475 2.50302 2.80437 3.26793 3.59467 3.69651 3.79018 3.83318 3.92937 4.06261 4.22619 4.30076 4.36118 4.40936 4.42673 4.54567 4.55072 4.64614 4.67726 4.68361 4.74180 4.75498 4.76933 4.86964 4.99728 5.07793 5.13561 5.15709 5.18058 5.25331 5.27131 5.30152 5.39298 5.41380 5.44241 5.52805 5.62080 5.64805 5.87133 5.90026 6.37307 6.49511 6.59212 7.03835 7.16770 7.22457 7.83704 8.35293 9.12403 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013446 B = 0.002315 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.914424 B =12090.917187 C =13121.896220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.264 4.264 6 H 0.052 0.948 7 C -0.033 4.033 8 N -0.916 5.916 9 Si 0.958 3.042 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.274 1.274 13 C 0.134 3.866 14 C 0.123 3.877 15 N -0.707 5.707 16 C 0.549 3.451 17 O -0.570 6.570 18 C -0.132 4.132 19 C -0.101 4.101 20 C -0.109 4.109 21 C -0.117 4.117 22 C 0.130 3.870 23 N -0.659 5.659 24 C 0.504 3.496 25 C -0.164 4.164 26 O -0.570 6.570 27 C -0.066 4.066 28 C -0.110 4.110 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.049 0.951 36 H 0.254 0.746 37 H 0.091 0.909 38 H 0.039 0.961 39 H 0.047 0.953 40 H 0.028 0.972 41 H 0.409 0.591 42 H 0.143 0.857 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.426 0.574 46 H 0.118 0.882 47 H 0.096 0.904 48 H 0.114 0.886 49 H 0.065 0.935 50 H 0.078 0.922 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.740 -10.965 -21.493 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.395 4.395 6 H 0.069 0.931 7 C -0.230 4.230 8 N -0.560 5.560 9 Si 0.787 3.213 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.200 1.200 13 C 0.007 3.993 14 C -0.003 4.003 15 N -0.359 5.359 16 C 0.338 3.662 17 O -0.452 6.452 18 C -0.136 4.136 19 C -0.120 4.120 20 C -0.127 4.127 21 C -0.137 4.137 22 C 0.035 3.965 23 N -0.306 5.306 24 C 0.295 3.705 25 C -0.223 4.223 26 O -0.449 6.449 27 C -0.070 4.070 28 C -0.166 4.166 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.246 0.754 42 H 0.161 0.839 43 H 0.175 0.825 44 H 0.168 0.832 45 H 0.267 0.733 46 H 0.136 0.864 47 H 0.115 0.885 48 H 0.133 0.867 49 H 0.084 0.916 50 H 0.096 0.904 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.174 -10.985 -21.237 23.939 hybrid contribution 0.556 0.058 1.143 1.272 sum 1.730 -10.928 -20.094 22.938 Atomic orbital electron populations 1.21653 0.94226 1.01777 1.01998 1.22025 0.96452 0.98827 1.00198 1.21057 0.83346 0.94504 0.99059 1.43801 1.00771 1.85150 1.02061 1.19167 1.08313 1.17156 0.94832 0.93054 1.25941 1.01549 0.95374 1.00096 1.69814 1.26772 1.21835 1.37597 0.85501 0.78344 0.77057 0.80446 1.21140 1.21455 1.20007 1.21168 1.00385 0.91776 0.85978 1.21946 0.94025 1.01237 0.83066 1.45912 1.57253 1.09297 1.23422 1.18644 0.78966 0.84081 0.84540 1.90671 1.56947 1.27017 1.70527 1.19585 1.03656 0.95090 0.95238 1.21525 0.97046 0.96218 0.97218 1.21278 0.97959 0.99684 0.93816 1.21813 0.99541 0.90798 1.01595 1.17554 0.99688 0.88037 0.91213 1.43696 1.32709 1.16151 1.38032 1.21947 0.78298 0.89748 0.80465 1.21979 1.06501 0.95083 0.98698 1.90663 1.44958 1.38913 1.70380 1.19795 0.98801 0.96299 0.92098 1.20895 1.02762 0.91708 1.01255 0.92125 0.92270 0.92549 0.93715 0.94316 0.94541 0.93282 0.93662 0.89115 0.94219 0.93432 0.95329 0.75435 0.83906 0.82533 0.83244 0.73328 0.86374 0.88526 0.86724 0.91594 0.90382 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.91 71.98 0.71 -3.11 16 2 C -0.14 -4.89 6.23 30.60 0.19 -4.70 16 3 C 0.15 5.99 5.72 86.38 0.49 6.49 16 4 N -0.60 -29.12 2.44 -702.01 -1.71 -30.83 16 5 C -0.26 -14.28 9.50 84.03 0.80 -13.49 16 6 H 0.05 2.81 7.84 -2.91 -0.02 2.79 16 7 C -0.03 -1.77 5.23 84.86 0.44 -1.33 16 8 N -0.92 -51.07 10.91 21.65 0.24 -50.84 16 9 Si 0.96 44.48 29.56 68.60 2.03 46.51 16 10 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 C 0.13 6.04 5.43 86.38 0.47 6.51 16 14 C 0.12 5.17 6.00 86.38 0.52 5.69 16 15 N -0.71 -24.70 5.51 -465.95 -2.57 -27.27 16 16 C 0.55 19.36 7.70 86.79 0.67 20.03 16 17 O -0.57 -23.25 13.34 -3.85 -0.05 -23.31 16 18 C -0.13 -3.81 5.87 -20.10 -0.12 -3.93 16 19 C -0.10 -2.43 9.52 22.54 0.21 -2.21 16 20 C -0.11 -2.35 10.02 22.21 0.22 -2.12 16 21 C -0.12 -2.73 8.74 22.44 0.20 -2.54 16 22 C 0.13 2.95 6.44 38.11 0.25 3.20 16 23 N -0.66 -10.17 5.20 -303.60 -1.58 -11.75 16 24 C 0.50 8.02 7.77 87.66 0.68 8.70 16 25 C -0.16 -0.85 10.32 71.24 0.74 -0.11 16 26 O -0.57 -14.24 14.10 -3.04 -0.04 -14.28 16 27 C -0.07 -1.71 5.93 -19.47 -0.12 -1.83 16 28 C -0.11 -2.58 8.55 71.24 0.61 -1.97 16 29 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.67 6.65 -2.39 -0.02 1.66 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.04 1.54 8.08 -2.38 -0.02 1.52 16 35 H 0.05 1.86 7.83 -2.39 -0.02 1.84 16 36 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 37 H 0.09 4.64 5.20 -2.39 -0.01 4.63 16 38 H 0.04 1.65 7.86 -2.39 -0.02 1.63 16 39 H 0.05 2.01 6.65 -2.39 -0.02 1.99 16 40 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.41 12.14 6.54 -92.71 -0.61 11.53 16 42 H 0.14 2.97 6.45 -2.91 -0.02 2.95 16 43 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 44 H 0.15 3.59 5.59 -2.91 -0.02 3.57 16 45 H 0.43 3.76 6.76 -92.71 -0.63 3.14 16 46 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 47 H 0.10 0.58 8.12 -2.39 -0.02 0.57 16 48 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 49 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 50 H 0.08 2.27 5.83 -2.39 -0.01 2.25 16 51 H 0.08 1.22 6.16 -2.39 -0.01 1.21 16 Total: -1.00 -72.50 408.35 3.01 -69.49 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: -0.27 Total: 29.01 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 6.97 Total: 13.26 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -5.62 Total: -120.68 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.09 Total: -37.59 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -72.50 3.01 -69.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266575635.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.945 kcal (2) G-P(sol) polarization free energy of solvation -72.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds