Wall clock time and date at job start Wed Apr 1 2020 05:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46908 * 2 1 4 4 N 1.46497 * 109.46928 * 180.02562 * 3 2 1 5 5 C 1.36937 * 120.00201 * 275.30925 * 4 3 2 6 6 H 1.08009 * 119.99779 * 37.57545 * 5 4 3 7 7 C 1.38811 * 120.00164 * 217.58093 * 5 4 3 8 8 N 1.31614 * 119.99983 * 21.42111 * 7 5 4 9 9 Si 1.86806 * 119.99924 * 201.41785 * 7 5 4 10 10 H 1.48499 * 109.46903 * 59.99988 * 9 7 5 11 11 H 1.48501 * 109.46625 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47199 * 300.00005 * 9 7 5 13 13 C 1.46504 * 120.00005 * 95.30734 * 4 3 2 14 14 C 1.52998 * 109.46915 * 269.99755 * 13 4 3 15 15 N 1.46504 * 109.46915 * 179.97438 * 14 13 4 16 16 C 1.34774 * 119.99991 * 179.97438 * 15 14 13 17 17 O 1.21283 * 120.00019 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00036 * 180.02562 * 16 15 14 19 19 H 1.09005 * 109.47138 * 60.00589 * 18 16 15 20 20 C 1.53000 * 109.47069 * 300.00189 * 18 16 15 21 21 N 1.46504 * 109.47381 * 180.02562 * 18 16 15 22 22 C 1.34776 * 120.00099 * 205.00280 * 21 18 16 23 23 O 1.21554 * 120.00110 * 359.97438 * 22 21 18 24 24 C 1.47850 * 120.00059 * 179.97438 * 22 21 18 25 25 C 1.39575 * 120.14137 * 359.72063 * 24 22 21 26 26 C 1.37956 * 119.85108 * 179.79298 * 25 24 22 27 27 C 1.38362 * 120.14437 * 0.48407 * 26 25 24 28 28 C 1.38359 * 120.29190 * 359.74658 * 27 26 25 29 29 C 1.37957 * 120.14577 * 0.02562 * 28 27 26 30 30 H 1.08998 * 109.47573 * 300.00090 * 1 2 3 31 31 H 1.09001 * 109.47418 * 60.00303 * 1 2 3 32 32 H 1.09004 * 109.47119 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47073 * 239.99784 * 2 1 3 34 34 H 1.08999 * 109.46915 * 119.99818 * 2 1 3 35 35 H 1.08996 * 109.47430 * 60.00003 * 3 2 1 36 36 H 1.08999 * 109.47184 * 299.99653 * 3 2 1 37 37 H 0.96996 * 120.00240 * 180.02562 * 8 7 5 38 38 H 1.09005 * 109.47083 * 150.00364 * 13 4 3 39 39 H 1.08989 * 109.47047 * 29.99848 * 13 4 3 40 40 H 1.08998 * 109.47357 * 60.00227 * 14 13 4 41 41 H 1.08996 * 109.47723 * 299.99980 * 14 13 4 42 42 H 0.97001 * 119.99938 * 0.02562 * 15 14 13 43 43 H 1.08999 * 109.47228 * 179.97438 * 20 18 16 44 44 H 1.08998 * 109.47018 * 299.99727 * 20 18 16 45 45 H 1.08994 * 109.47064 * 59.99925 * 20 18 16 46 46 H 0.97002 * 119.99874 * 24.99883 * 21 18 16 47 47 H 1.08000 * 120.07528 * 0.02562 * 25 24 22 48 48 H 1.07998 * 119.93206 * 180.23408 * 26 25 24 49 49 H 1.08003 * 119.85230 * 179.72157 * 27 26 25 50 50 H 1.08002 * 119.93002 * 180.02562 * 28 27 26 51 51 H 1.07995 * 120.07412 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1902 1.3326 1.1799 6 1 3.8185 0.6870 1.9619 7 6 5.3623 2.0511 1.3715 8 7 5.6025 3.1238 0.6478 9 14 6.5989 1.4954 2.6567 10 1 7.0675 0.1241 2.3323 11 1 7.7569 2.4250 2.6638 12 1 5.9555 1.4949 3.9950 13 6 4.2369 1.5601 -1.2642 14 6 4.4917 0.1647 -1.8377 15 7 5.2232 0.2823 -3.1016 16 6 5.5602 -0.8258 -3.7907 17 8 5.2576 -1.9203 -3.3648 18 6 6.3131 -0.7049 -5.0905 19 1 7.2655 -0.2051 -4.9136 20 6 5.4855 0.1115 -6.0852 21 7 6.5570 -2.0410 -5.6398 22 6 7.5949 -2.2473 -6.4745 23 8 8.3282 -1.3248 -6.7721 24 6 7.8413 -3.5958 -7.0284 25 6 7.0046 -4.6586 -6.6841 26 6 7.2375 -5.9135 -7.2078 27 6 8.3038 -6.1219 -8.0645 28 6 9.1399 -5.0737 -8.4060 29 6 8.9153 -3.8129 -7.8930 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 6.4217 3.6256 0.7814 38 1 5.1895 2.0596 -1.0872 39 1 3.6476 2.1420 -1.9727 40 1 3.5393 -0.3349 -2.0147 41 1 5.0811 -0.4173 -1.1292 42 1 5.4655 1.1576 -3.4421 43 1 6.0303 0.1994 -7.0252 44 1 4.5333 -0.3884 -6.2621 45 1 5.3037 1.1056 -5.6768 46 1 5.9716 -2.7772 -5.4026 47 1 6.1744 -4.4981 -6.0123 48 1 6.5887 -6.7359 -6.9453 49 1 8.4845 -7.1072 -8.4682 50 1 9.9702 -5.2429 -9.0756 51 1 9.5688 -2.9957 -8.1600 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266577421.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:12 Heat of formation + Delta-G solvation = -37.624858 kcal Electronic energy + Delta-G solvation = -29987.907343 eV Core-core repulsion = 25887.429027 eV Total energy + Delta-G solvation = -4100.478316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.65441 -39.52909 -38.35175 -36.56913 -35.12090 -34.40142 -32.94012 -32.23002 -31.27482 -30.90784 -30.16098 -28.03857 -25.60106 -25.14686 -23.98776 -23.09515 -22.65901 -21.04799 -20.64054 -20.36387 -20.00626 -18.69181 -16.99851 -16.76378 -16.59659 -15.92378 -15.56119 -15.50111 -15.05160 -14.82752 -14.77797 -14.66625 -14.36410 -14.00968 -13.88582 -13.64927 -13.56669 -13.16309 -12.99160 -12.83902 -12.81452 -12.47656 -12.36758 -12.01265 -11.75409 -11.61019 -11.53585 -11.43332 -11.22280 -10.97258 -10.75724 -10.49702 -10.41024 -10.18242 -10.12011 -9.94360 -9.84884 -9.64949 -9.40596 -9.34295 -9.19297 -8.66724 -8.50439 -6.66351 -5.87499 -3.46392 0.53380 1.01741 2.60315 2.73416 2.78250 3.33608 3.39957 3.43433 3.50611 3.59277 4.38142 4.42914 4.48481 4.58778 4.71915 4.80302 4.92429 5.01517 5.04909 5.13650 5.23592 5.43138 5.43576 5.44489 5.61045 5.62842 5.63913 5.72409 5.95214 5.96740 5.97264 6.04439 6.05773 6.08431 6.12253 6.20003 6.24566 6.37405 6.48399 6.52185 6.58200 6.61870 6.74884 6.93665 6.95227 7.14149 7.30314 7.47909 7.74557 7.76739 7.99581 8.36693 8.44461 9.10462 9.72315 10.29968 11.12649 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.002185 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.571384 B =12810.617301 C =13634.359689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.263 4.263 6 H 0.061 0.939 7 C 0.014 3.986 8 N -0.887 5.887 9 Si 0.897 3.103 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.137 3.863 14 C 0.097 3.903 15 N -0.711 5.711 16 C 0.505 3.495 17 O -0.546 6.546 18 C 0.123 3.877 19 H 0.115 0.885 20 C -0.158 4.158 21 N -0.706 5.706 22 C 0.561 3.439 23 O -0.538 6.538 24 C -0.133 4.133 25 C -0.084 4.084 26 C -0.128 4.128 27 C -0.096 4.096 28 C -0.130 4.130 29 C -0.060 4.060 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.034 0.966 37 H 0.256 0.744 38 H 0.099 0.901 39 H 0.029 0.971 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.400 0.600 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.409 0.591 47 H 0.129 0.871 48 H 0.129 0.871 49 H 0.126 0.874 50 H 0.129 0.871 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 -12.523 -18.234 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.392 4.392 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.529 5.529 9 Si 0.726 3.274 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.009 3.991 14 C -0.028 4.028 15 N -0.361 5.361 16 C 0.289 3.711 17 O -0.424 6.424 18 C 0.014 3.986 19 H 0.133 0.867 20 C -0.217 4.217 21 N -0.360 5.360 22 C 0.349 3.651 23 O -0.416 6.416 24 C -0.136 4.136 25 C -0.102 4.102 26 C -0.146 4.146 27 C -0.114 4.114 28 C -0.148 4.148 29 C -0.079 4.079 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.117 0.883 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.234 0.766 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.247 0.753 47 H 0.147 0.853 48 H 0.147 0.853 49 H 0.144 0.856 50 H 0.147 0.853 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.329 -12.451 -18.049 21.967 hybrid contribution 0.523 -0.336 0.698 0.935 sum 1.851 -12.787 -17.351 21.633 Atomic orbital electron populations 1.21723 0.97326 1.00399 1.01018 1.22186 0.93816 1.00950 1.01540 1.20939 0.85039 0.92952 0.98944 1.43588 0.99422 1.84787 1.02034 1.18970 1.05720 1.20526 0.94001 0.92108 1.25183 1.00803 0.94504 0.98122 1.69974 1.25739 1.14669 1.42471 0.86471 0.81005 0.78313 0.81634 1.20791 1.21555 1.20596 1.21067 1.00432 0.91084 0.86494 1.22537 0.94835 1.03021 0.82435 1.46081 1.57306 1.08326 1.24422 1.20446 0.79927 0.85136 0.85559 1.90675 1.55315 1.26553 1.69877 1.20839 1.00932 0.84850 0.91945 0.86682 1.22123 1.00085 0.99907 0.99558 1.45663 1.31065 1.11676 1.47547 1.18265 0.80042 0.88245 0.78547 1.90772 1.47042 1.43955 1.59858 1.19926 0.98817 0.93190 1.01674 1.21423 0.98234 0.92588 0.97998 1.21145 0.98377 0.97032 0.98008 1.21404 0.94313 0.99186 0.96486 1.21176 1.00190 0.92643 1.00811 1.21305 0.95308 0.97561 0.93700 0.93188 0.93467 0.93820 0.92986 0.92360 0.93557 0.94751 0.93401 0.88341 0.95217 0.92821 0.91609 0.76610 0.90894 0.91758 0.90548 0.75266 0.85303 0.85262 0.85559 0.85281 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.14 -2.58 6.23 -26.73 -0.17 -2.74 16 3 C 0.15 2.98 5.72 -4.04 -0.02 2.96 16 4 N -0.58 -13.59 2.43 -173.24 -0.42 -14.01 16 5 C -0.26 -6.89 9.45 -15.06 -0.14 -7.03 16 6 H 0.06 1.61 7.92 -52.48 -0.42 1.20 16 7 C 0.01 0.39 4.95 -17.43 -0.09 0.30 16 8 N -0.89 -24.32 11.47 55.49 0.64 -23.69 16 9 Si 0.90 21.21 29.61 -169.99 -5.03 16.18 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.14 2.92 5.45 -4.04 -0.02 2.90 16 14 C 0.10 1.87 6.00 -4.04 -0.02 1.84 16 15 N -0.71 -11.10 5.45 -60.30 -0.33 -11.43 16 16 C 0.51 7.85 7.22 -10.99 -0.08 7.77 16 17 O -0.55 -10.19 15.84 5.56 0.09 -10.10 16 18 C 0.12 1.55 2.99 -69.08 -0.21 1.35 16 19 H 0.12 1.50 7.58 -51.93 -0.39 1.11 16 20 C -0.16 -1.63 9.38 37.16 0.35 -1.28 16 21 N -0.71 -8.71 4.90 -55.87 -0.27 -8.98 16 22 C 0.56 7.32 7.74 -12.33 -0.10 7.22 16 23 O -0.54 -8.43 16.01 5.32 0.09 -8.35 16 24 C -0.13 -1.45 5.87 -104.97 -0.62 -2.07 16 25 C -0.08 -0.76 9.54 -39.19 -0.37 -1.14 16 26 C -0.13 -0.96 10.03 -39.64 -0.40 -1.36 16 27 C -0.10 -0.66 10.04 -39.49 -0.40 -1.06 16 28 C -0.13 -0.99 10.03 -39.64 -0.40 -1.38 16 29 C -0.06 -0.59 9.60 -39.19 -0.38 -0.96 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.94 6.64 -51.93 -0.34 0.60 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 37 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.10 2.38 5.52 -51.93 -0.29 2.10 16 39 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 40 H 0.05 1.05 6.64 -51.93 -0.34 0.71 16 41 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.40 5.27 7.89 -40.82 -0.32 4.94 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.68 7.56 -51.93 -0.39 0.29 16 46 H 0.41 4.73 5.83 -40.82 -0.24 4.49 16 47 H 0.13 1.03 6.41 -52.49 -0.34 0.70 16 48 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 49 H 0.13 0.56 8.06 -52.48 -0.42 0.13 16 50 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 51 H 0.14 1.33 7.65 -52.49 -0.40 0.93 16 LS Contribution 420.06 15.07 6.33 6.33 Total: -1.00 -31.67 420.06 -9.68 -41.35 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -8.07 Total: 9.13 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -2.69 Total: 3.57 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.39 Total: -58.11 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.17 Total: -18.45 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -31.67 -9.68 -41.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266577421.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.726 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds