Wall clock time and date at job start Wed Apr 1 2020 05:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46908 * 2 1 4 4 N 1.46497 * 109.46928 * 180.02562 * 3 2 1 5 5 C 1.36937 * 120.00201 * 275.30925 * 4 3 2 6 6 H 1.08009 * 119.99779 * 37.57545 * 5 4 3 7 7 C 1.38811 * 120.00164 * 217.58093 * 5 4 3 8 8 N 1.31614 * 119.99983 * 21.42111 * 7 5 4 9 9 Si 1.86806 * 119.99924 * 201.41785 * 7 5 4 10 10 H 1.48499 * 109.46903 * 59.99988 * 9 7 5 11 11 H 1.48501 * 109.46625 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47199 * 300.00005 * 9 7 5 13 13 C 1.46504 * 120.00005 * 95.30734 * 4 3 2 14 14 C 1.52998 * 109.46915 * 269.99755 * 13 4 3 15 15 N 1.46504 * 109.46915 * 179.97438 * 14 13 4 16 16 C 1.34774 * 119.99991 * 179.97438 * 15 14 13 17 17 O 1.21283 * 120.00019 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00036 * 180.02562 * 16 15 14 19 19 H 1.09005 * 109.47138 * 60.00589 * 18 16 15 20 20 C 1.53000 * 109.47069 * 300.00189 * 18 16 15 21 21 N 1.46504 * 109.47381 * 180.02562 * 18 16 15 22 22 C 1.34776 * 120.00099 * 205.00280 * 21 18 16 23 23 O 1.21554 * 120.00110 * 359.97438 * 22 21 18 24 24 C 1.47850 * 120.00059 * 179.97438 * 22 21 18 25 25 C 1.39575 * 120.14137 * 359.72063 * 24 22 21 26 26 C 1.37956 * 119.85108 * 179.79298 * 25 24 22 27 27 C 1.38362 * 120.14437 * 0.48407 * 26 25 24 28 28 C 1.38359 * 120.29190 * 359.74658 * 27 26 25 29 29 C 1.37957 * 120.14577 * 0.02562 * 28 27 26 30 30 H 1.08998 * 109.47573 * 300.00090 * 1 2 3 31 31 H 1.09001 * 109.47418 * 60.00303 * 1 2 3 32 32 H 1.09004 * 109.47119 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47073 * 239.99784 * 2 1 3 34 34 H 1.08999 * 109.46915 * 119.99818 * 2 1 3 35 35 H 1.08996 * 109.47430 * 60.00003 * 3 2 1 36 36 H 1.08999 * 109.47184 * 299.99653 * 3 2 1 37 37 H 0.96996 * 120.00240 * 180.02562 * 8 7 5 38 38 H 1.09005 * 109.47083 * 150.00364 * 13 4 3 39 39 H 1.08989 * 109.47047 * 29.99848 * 13 4 3 40 40 H 1.08998 * 109.47357 * 60.00227 * 14 13 4 41 41 H 1.08996 * 109.47723 * 299.99980 * 14 13 4 42 42 H 0.97001 * 119.99938 * 0.02562 * 15 14 13 43 43 H 1.08999 * 109.47228 * 179.97438 * 20 18 16 44 44 H 1.08998 * 109.47018 * 299.99727 * 20 18 16 45 45 H 1.08994 * 109.47064 * 59.99925 * 20 18 16 46 46 H 0.97002 * 119.99874 * 24.99883 * 21 18 16 47 47 H 1.08000 * 120.07528 * 0.02562 * 25 24 22 48 48 H 1.07998 * 119.93206 * 180.23408 * 26 25 24 49 49 H 1.08003 * 119.85230 * 179.72157 * 27 26 25 50 50 H 1.08002 * 119.93002 * 180.02562 * 28 27 26 51 51 H 1.07995 * 120.07412 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1902 1.3326 1.1799 6 1 3.8185 0.6870 1.9619 7 6 5.3623 2.0511 1.3715 8 7 5.6025 3.1238 0.6478 9 14 6.5989 1.4954 2.6567 10 1 7.0675 0.1241 2.3323 11 1 7.7569 2.4250 2.6638 12 1 5.9555 1.4949 3.9950 13 6 4.2369 1.5601 -1.2642 14 6 4.4917 0.1647 -1.8377 15 7 5.2232 0.2823 -3.1016 16 6 5.5602 -0.8258 -3.7907 17 8 5.2576 -1.9203 -3.3648 18 6 6.3131 -0.7049 -5.0905 19 1 7.2655 -0.2051 -4.9136 20 6 5.4855 0.1115 -6.0852 21 7 6.5570 -2.0410 -5.6398 22 6 7.5949 -2.2473 -6.4745 23 8 8.3282 -1.3248 -6.7721 24 6 7.8413 -3.5958 -7.0284 25 6 7.0046 -4.6586 -6.6841 26 6 7.2375 -5.9135 -7.2078 27 6 8.3038 -6.1219 -8.0645 28 6 9.1399 -5.0737 -8.4060 29 6 8.9153 -3.8129 -7.8930 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 6.4217 3.6256 0.7814 38 1 5.1895 2.0596 -1.0872 39 1 3.6476 2.1420 -1.9727 40 1 3.5393 -0.3349 -2.0147 41 1 5.0811 -0.4173 -1.1292 42 1 5.4655 1.1576 -3.4421 43 1 6.0303 0.1994 -7.0252 44 1 4.5333 -0.3884 -6.2621 45 1 5.3037 1.1056 -5.6768 46 1 5.9716 -2.7772 -5.4026 47 1 6.1744 -4.4981 -6.0123 48 1 6.5887 -6.7359 -6.9453 49 1 8.4845 -7.1072 -8.4682 50 1 9.9702 -5.2429 -9.0756 51 1 9.5688 -2.9957 -8.1600 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266577421.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:11 Heat of formation + Delta-G solvation = -56.841189 kcal Electronic energy + Delta-G solvation = -29988.740626 eV Core-core repulsion = 25887.429027 eV Total energy + Delta-G solvation = -4101.311599 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.68710 -40.64142 -39.21534 -38.26566 -36.23035 -35.84758 -34.61051 -33.18062 -32.52809 -31.90794 -31.14021 -29.54174 -27.33815 -26.18480 -25.24731 -24.19345 -23.40892 -22.60323 -21.93694 -21.57125 -21.33291 -19.68046 -18.63076 -17.85680 -17.72466 -17.03841 -16.99810 -16.56467 -16.48698 -16.13837 -15.94609 -15.74057 -15.55840 -15.43547 -14.88304 -14.74010 -14.64309 -14.48799 -14.30646 -14.27690 -13.77541 -13.51102 -13.34426 -13.33588 -13.07659 -12.91322 -12.73559 -12.63946 -12.60177 -12.52829 -12.22990 -12.04629 -12.04346 -11.86763 -11.68831 -11.32989 -11.20201 -11.02159 -10.53814 -10.41964 -10.09292 -9.97608 -9.93249 -8.59246 -7.86636 -5.49260 -0.18360 0.39363 1.42756 1.44045 1.46995 1.52186 1.65143 1.80141 2.29604 2.49433 2.87341 3.20403 3.43456 3.61924 3.80387 3.88049 3.95903 4.00033 4.04452 4.22474 4.23154 4.33212 4.39199 4.44942 4.49535 4.52092 4.61314 4.68659 4.72023 4.74158 4.83970 4.86324 5.00236 5.04023 5.11279 5.15683 5.17511 5.23890 5.26989 5.32422 5.34624 5.42926 5.44763 5.48896 5.63337 5.65384 5.73909 5.92857 6.32919 6.41650 6.47988 6.99864 7.07675 7.15614 7.82605 8.34143 9.08630 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.002185 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.571384 B =12810.617301 C =13634.359689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.269 4.269 6 H 0.051 0.949 7 C -0.028 4.028 8 N -0.909 5.909 9 Si 0.948 3.052 10 H -0.287 1.287 11 H -0.290 1.290 12 H -0.275 1.275 13 C 0.143 3.857 14 C 0.120 3.880 15 N -0.704 5.704 16 C 0.509 3.491 17 O -0.577 6.577 18 C 0.129 3.871 19 H 0.112 0.888 20 C -0.151 4.151 21 N -0.704 5.704 22 C 0.560 3.440 23 O -0.573 6.573 24 C -0.158 4.158 25 C -0.091 4.091 26 C -0.130 4.130 27 C -0.088 4.088 28 C -0.130 4.130 29 C -0.076 4.076 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.037 0.963 35 H 0.034 0.966 36 H 0.051 0.949 37 H 0.254 0.746 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.030 0.970 42 H 0.414 0.586 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.413 0.587 47 H 0.134 0.866 48 H 0.154 0.846 49 H 0.159 0.841 50 H 0.154 0.846 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.233 -14.165 -19.703 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.316 5.316 5 C -0.399 4.399 6 H 0.069 0.931 7 C -0.226 4.226 8 N -0.552 5.552 9 Si 0.777 3.223 10 H -0.213 1.213 11 H -0.216 1.216 12 H -0.200 1.200 13 C 0.016 3.984 14 C -0.006 4.006 15 N -0.355 5.355 16 C 0.295 3.705 17 O -0.457 6.457 18 C 0.021 3.979 19 H 0.130 0.870 20 C -0.209 4.209 21 N -0.357 5.357 22 C 0.349 3.651 23 O -0.453 6.453 24 C -0.161 4.161 25 C -0.110 4.110 26 C -0.147 4.147 27 C -0.106 4.106 28 C -0.147 4.147 29 C -0.095 4.095 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.250 0.750 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.111 0.889 46 H 0.252 0.748 47 H 0.151 0.849 48 H 0.172 0.828 49 H 0.176 0.824 50 H 0.172 0.828 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.610 -14.093 -19.530 24.092 hybrid contribution 0.712 0.096 1.117 1.328 sum 1.322 -13.997 -18.413 23.167 Atomic orbital electron populations 1.21656 0.94300 1.01769 1.01980 1.22012 0.96370 0.98732 1.00297 1.21052 0.83284 0.94561 0.99091 1.43820 1.00857 1.85051 1.01921 1.19098 1.06178 1.19837 0.94798 0.93107 1.25729 1.02122 0.94761 0.99978 1.70064 1.25925 1.15438 1.43797 0.85654 0.79198 0.77390 0.80093 1.21322 1.21560 1.20012 1.20941 0.99275 0.91935 0.86259 1.21980 0.94468 1.01046 0.83092 1.45883 1.57026 1.09359 1.23246 1.20883 0.79257 0.84327 0.86074 1.90659 1.56534 1.27719 1.70794 1.20804 1.00603 0.85557 0.90940 0.87029 1.22097 0.99745 1.00323 0.98752 1.45681 1.31062 1.11677 1.47286 1.18661 0.79402 0.88914 0.78079 1.90740 1.48172 1.45199 1.61218 1.19888 1.00427 0.92497 1.03286 1.21560 0.98159 0.92945 0.98321 1.21499 0.98850 0.96890 0.97507 1.21830 0.93202 1.00324 0.95284 1.21488 1.00922 0.91752 1.00583 1.21402 0.95231 0.98593 0.94262 0.92724 0.92023 0.92270 0.93429 0.94389 0.94776 0.93106 0.93711 0.90954 0.93410 0.92760 0.95188 0.74972 0.90903 0.91162 0.88867 0.74808 0.84853 0.82824 0.82361 0.82820 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.91 71.98 0.71 -2.98 16 2 C -0.13 -4.67 6.23 30.60 0.19 -4.48 16 3 C 0.15 5.80 5.72 86.38 0.49 6.29 16 4 N -0.60 -28.20 2.43 -702.01 -1.71 -29.91 16 5 C -0.27 -14.33 9.45 84.03 0.79 -13.54 16 6 H 0.05 2.76 7.92 -2.91 -0.02 2.74 16 7 C -0.03 -1.49 4.95 84.86 0.42 -1.07 16 8 N -0.91 -50.53 11.47 21.65 0.25 -50.28 16 9 Si 0.95 44.24 29.61 68.60 2.03 46.27 16 10 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 13 C 0.14 6.12 5.45 86.38 0.47 6.60 16 14 C 0.12 4.68 6.00 86.38 0.52 5.20 16 15 N -0.70 -21.76 5.45 -463.07 -2.52 -24.29 16 16 C 0.51 15.72 7.22 87.66 0.63 16.35 16 17 O -0.58 -21.63 15.84 -3.04 -0.05 -21.68 16 18 C 0.13 3.24 2.99 44.24 0.13 3.38 16 19 H 0.11 2.93 7.58 -2.38 -0.02 2.91 16 20 C -0.15 -2.94 9.38 71.98 0.68 -2.26 16 21 N -0.70 -17.47 4.90 -448.96 -2.20 -19.67 16 22 C 0.56 14.94 7.74 86.79 0.67 15.61 16 23 O -0.57 -18.52 16.01 -3.89 -0.06 -18.58 16 24 C -0.16 -3.46 5.87 -20.09 -0.12 -3.58 16 25 C -0.09 -1.58 9.54 22.53 0.21 -1.36 16 26 C -0.13 -1.64 10.03 22.23 0.22 -1.42 16 27 C -0.09 -0.96 10.04 22.33 0.22 -0.73 16 28 C -0.13 -1.71 10.03 22.23 0.22 -1.49 16 29 C -0.08 -1.47 9.60 22.53 0.22 -1.26 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 1.68 6.64 -2.39 -0.02 1.67 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16 36 H 0.05 1.84 7.83 -2.39 -0.02 1.82 16 37 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 38 H 0.07 3.55 5.52 -2.38 -0.01 3.54 16 39 H 0.05 1.85 7.86 -2.39 -0.02 1.83 16 40 H 0.05 2.11 6.64 -2.39 -0.02 2.10 16 41 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.41 10.57 7.89 -92.71 -0.73 9.84 16 43 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.09 1.49 7.56 -2.39 -0.02 1.47 16 46 H 0.41 9.58 5.83 -92.71 -0.54 9.04 16 47 H 0.13 2.07 6.41 -2.91 -0.02 2.05 16 48 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 49 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 50 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 51 H 0.13 2.59 7.65 -2.91 -0.02 2.57 16 Total: -1.00 -69.63 420.06 2.10 -67.53 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: -0.33 Total: 31.37 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 6.70 Total: 19.25 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -6.18 Total: -124.15 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.11 Total: -40.26 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -69.63 2.10 -67.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266577421.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.686 kcal (2) G-P(sol) polarization free energy of solvation -69.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds