Wall clock time and date at job start Wed Apr 1 2020 05:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47273 * 2 1 4 4 N 1.46496 * 109.47150 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00043 * 264.11462 * 4 3 2 6 6 H 1.08000 * 119.99895 * 188.01199 * 5 4 3 7 7 C 1.38813 * 119.99931 * 8.01887 * 5 4 3 8 8 N 1.31613 * 120.00205 * 25.64291 * 7 5 4 9 9 Si 1.86801 * 119.99976 * 205.64801 * 7 5 4 10 10 H 1.48498 * 109.47379 * 84.98316 * 9 7 5 11 11 H 1.48495 * 109.47401 * 204.98727 * 9 7 5 12 12 H 1.48510 * 109.47001 * 324.98588 * 9 7 5 13 13 C 1.46497 * 120.00062 * 84.11534 * 4 3 2 14 14 C 1.52999 * 109.47423 * 270.00198 * 13 4 3 15 15 N 1.46497 * 109.47423 * 179.97438 * 14 13 4 16 16 C 1.34771 * 120.00118 * 179.97438 * 15 14 13 17 17 O 1.21288 * 119.99913 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99998 * 179.97438 * 16 15 14 19 19 H 1.08997 * 109.47296 * 300.00222 * 18 16 15 20 20 C 1.53005 * 109.46815 * 60.00578 * 18 16 15 21 21 N 1.46508 * 109.46912 * 180.02562 * 18 16 15 22 22 C 1.34779 * 119.99712 * 155.00760 * 21 18 16 23 23 O 1.21554 * 119.99855 * 359.97438 * 22 21 18 24 24 C 1.47849 * 119.99548 * 180.02562 * 22 21 18 25 25 C 1.39568 * 120.14730 * 359.71611 * 24 22 21 26 26 C 1.37959 * 119.85161 * 179.79137 * 25 24 22 27 27 C 1.38355 * 120.14365 * 0.48801 * 26 25 24 28 28 C 1.38357 * 120.29509 * 359.74386 * 27 26 25 29 29 C 1.37954 * 120.14491 * 0.02562 * 28 27 26 30 30 H 1.09004 * 109.47470 * 59.99747 * 1 2 3 31 31 H 1.08996 * 109.47176 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47471 * 300.00112 * 1 2 3 33 33 H 1.08997 * 109.46983 * 240.00084 * 2 1 3 34 34 H 1.09003 * 109.46732 * 120.00261 * 2 1 3 35 35 H 1.09004 * 109.46679 * 60.00138 * 3 2 1 36 36 H 1.08997 * 109.47328 * 300.00248 * 3 2 1 37 37 H 0.96999 * 120.00241 * 180.02562 * 8 7 5 38 38 H 1.09005 * 109.47426 * 150.00059 * 13 4 3 39 39 H 1.08997 * 109.46912 * 29.99868 * 13 4 3 40 40 H 1.08998 * 109.47138 * 59.99241 * 14 13 4 41 41 H 1.09001 * 109.46735 * 300.00239 * 14 13 4 42 42 H 0.97000 * 120.00048 * 0.02562 * 15 14 13 43 43 H 1.08992 * 109.46781 * 299.99701 * 20 18 16 44 44 H 1.09000 * 109.47201 * 60.00213 * 20 18 16 45 45 H 1.09007 * 109.46816 * 179.97438 * 20 18 16 46 46 H 0.96994 * 120.00002 * 334.99754 * 21 18 16 47 47 H 1.08001 * 120.07364 * 0.02562 * 25 24 22 48 48 H 1.07995 * 119.92484 * 180.23307 * 26 25 24 49 49 H 1.08006 * 119.85277 * 179.71813 * 27 26 25 50 50 H 1.08002 * 119.93004 * 179.97438 * 28 27 26 51 51 H 1.07997 * 120.07561 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.5642 1.1806 6 1 5.2613 1.6943 1.1721 7 6 3.5048 1.5203 2.3875 8 7 2.3546 0.8858 2.4690 9 14 4.2162 2.3618 3.8958 10 1 3.8294 3.7955 3.8914 11 1 3.6882 1.7104 5.1214 12 1 5.6968 2.2485 3.8737 13 6 4.2380 1.3122 -1.2611 14 6 4.4931 -0.1680 -1.5523 15 7 5.2256 -0.2983 -2.8143 16 6 5.5630 -1.5192 -3.2746 17 8 5.2598 -2.5101 -2.6443 18 6 6.3160 -1.6533 -4.5731 19 1 5.7264 -1.2208 -5.3814 20 6 7.6526 -0.9163 -4.4659 21 7 6.5603 -3.0707 -4.8518 22 6 6.7439 -3.4860 -6.1208 23 8 6.7062 -2.6846 -7.0340 24 6 6.9898 -4.9165 -6.4021 25 6 7.0385 -5.8384 -5.3553 26 6 7.2642 -7.1724 -5.6251 27 6 7.4520 -7.5955 -6.9290 28 6 7.4098 -6.6860 -7.9708 29 6 7.1803 -5.3499 -7.7152 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 1.8762 0.8554 3.3123 38 1 5.1905 1.8367 -1.1838 39 1 3.6493 1.7453 -2.0697 40 1 3.5407 -0.6925 -1.6295 41 1 5.0818 -0.6011 -0.7436 42 1 5.4684 0.4941 -3.3182 43 1 7.4704 0.1381 -4.2587 44 1 8.2422 -1.3489 -3.6576 45 1 8.1975 -1.0136 -5.4050 46 1 6.5902 -3.7101 -4.1231 47 1 6.8961 -5.5088 -4.3368 48 1 7.2983 -7.8873 -4.8164 49 1 7.6329 -8.6403 -7.1344 50 1 7.5576 -7.0226 -8.9863 51 1 7.1479 -4.6409 -8.5292 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266577422.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:18 Heat of formation + Delta-G solvation = -24.657031 kcal Electronic energy + Delta-G solvation = -29942.860365 eV Core-core repulsion = 25842.944376 eV Total energy + Delta-G solvation = -4099.915989 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.70747 -39.59700 -38.39806 -36.65464 -35.18296 -34.53820 -32.35967 -31.95195 -31.40391 -31.28546 -30.18683 -27.84612 -25.53620 -25.19268 -24.00430 -23.09276 -22.66260 -20.88999 -20.72018 -20.35859 -19.85607 -18.71612 -16.99665 -16.85634 -16.75189 -16.03991 -15.64942 -15.52050 -14.99749 -14.95371 -14.84693 -14.62145 -14.08415 -14.00321 -13.80116 -13.66363 -13.47694 -13.14748 -12.94343 -12.84133 -12.54729 -12.48604 -12.39412 -12.03738 -11.79226 -11.62166 -11.45655 -11.35666 -11.08375 -10.88550 -10.64825 -10.42526 -10.23257 -10.00311 -9.96204 -9.90149 -9.71583 -9.45744 -9.36583 -9.27421 -9.22082 -8.72186 -8.37418 -6.97352 -5.81565 -3.13273 0.50641 0.99686 2.55990 2.65266 2.72684 3.36753 3.39936 3.45633 3.46906 3.55894 4.34302 4.45112 4.47562 4.57021 4.65350 4.76683 4.85623 4.95566 5.00636 5.11228 5.27687 5.36439 5.41811 5.49411 5.55589 5.60868 5.77750 5.84661 5.90352 5.94456 6.01979 6.06566 6.11099 6.16155 6.20490 6.26159 6.49972 6.50859 6.58480 6.62542 6.66360 6.81117 6.97146 7.16703 7.25042 7.25278 7.61636 7.63848 7.76298 7.94001 8.07722 8.26881 8.31997 9.18395 9.80110 10.24245 11.21730 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.001904 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.195968 B =14701.037861 C =14917.889150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.171 3.829 4 N -0.590 5.590 5 C -0.257 4.257 6 H 0.075 0.925 7 C 0.001 3.999 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.143 3.857 14 C 0.089 3.911 15 N -0.716 5.716 16 C 0.504 3.496 17 O -0.540 6.540 18 C 0.124 3.876 19 H 0.114 0.886 20 C -0.159 4.159 21 N -0.706 5.706 22 C 0.562 3.438 23 O -0.539 6.539 24 C -0.134 4.134 25 C -0.083 4.083 26 C -0.127 4.127 27 C -0.095 4.095 28 C -0.130 4.130 29 C -0.060 4.060 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.051 0.949 33 H 0.020 0.980 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.003 0.997 37 H 0.253 0.747 38 H 0.050 0.950 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.398 0.602 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.410 0.590 47 H 0.129 0.871 48 H 0.130 0.870 49 H 0.127 0.873 50 H 0.129 0.871 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.237 -11.141 -18.365 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.046 3.954 4 N -0.311 5.311 5 C -0.385 4.385 6 H 0.092 0.908 7 C -0.197 4.197 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.014 3.986 14 C -0.036 4.036 15 N -0.367 5.367 16 C 0.288 3.712 17 O -0.417 6.417 18 C 0.015 3.985 19 H 0.132 0.868 20 C -0.217 4.217 21 N -0.360 5.360 22 C 0.350 3.650 23 O -0.418 6.418 24 C -0.137 4.137 25 C -0.102 4.102 26 C -0.145 4.145 27 C -0.113 4.113 28 C -0.148 4.148 29 C -0.079 4.079 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.022 0.978 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.231 0.769 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.248 0.752 47 H 0.147 0.853 48 H 0.148 0.852 49 H 0.145 0.855 50 H 0.147 0.853 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.854 -11.237 -18.328 23.251 hybrid contribution 0.376 0.227 1.036 1.125 sum 9.230 -11.010 -17.292 22.482 Atomic orbital electron populations 1.21626 0.98551 0.99329 1.00028 1.22223 0.92944 1.00485 1.01327 1.20934 0.81511 0.94517 0.98455 1.44241 1.01913 1.83533 1.01381 1.19256 0.92239 1.43584 0.83456 0.90760 1.24732 0.97585 1.00062 0.97325 1.70158 1.17159 1.41099 1.25048 0.86373 0.78396 0.79906 0.82577 1.21581 1.21973 1.20775 1.20961 0.96458 0.91603 0.89579 1.22812 0.95916 1.01892 0.83018 1.46142 1.57668 1.07318 1.25580 1.20483 0.79885 0.84225 0.86569 1.90707 1.54937 1.37153 1.58952 1.20832 0.97832 0.83023 0.96795 0.86781 1.22130 0.95726 1.00429 1.03449 1.45676 1.72511 1.09061 1.08765 1.18266 0.76310 0.88038 0.82375 1.90765 1.51180 1.55354 1.44451 1.19912 1.06162 0.92790 0.94834 1.21429 0.96721 0.93373 0.98687 1.21154 1.00537 0.95649 0.97176 1.21408 0.97173 0.99922 0.92826 1.21174 1.01061 0.92954 0.99641 1.21297 0.94763 0.96059 0.95762 0.95074 0.94816 0.92965 0.96099 0.88355 0.89183 0.97835 0.93682 0.93122 0.93826 0.91464 0.91344 0.76880 0.90625 0.91644 0.90880 0.75180 0.85281 0.85220 0.85539 0.85280 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.91 37.16 0.37 -2.27 16 2 C -0.13 -2.90 5.60 -26.73 -0.15 -3.05 16 3 C 0.17 3.93 4.92 -4.04 -0.02 3.91 16 4 N -0.59 -13.72 2.54 -173.24 -0.44 -14.16 16 5 C -0.26 -6.61 9.70 -15.06 -0.15 -6.75 16 6 H 0.07 1.89 7.94 -52.49 -0.42 1.47 16 7 C 0.00 0.02 4.89 -17.43 -0.09 -0.06 16 8 N -0.89 -23.93 8.62 55.49 0.48 -23.45 16 9 Si 0.90 21.00 29.62 -169.99 -5.04 15.97 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.14 2.64 5.82 -4.04 -0.02 2.61 16 14 C 0.09 1.61 5.88 -4.04 -0.02 1.58 16 15 N -0.72 -9.88 5.45 -60.30 -0.33 -10.21 16 16 C 0.50 7.30 7.22 -10.99 -0.08 7.22 16 17 O -0.54 -9.85 15.84 5.55 0.09 -9.76 16 18 C 0.12 1.43 2.98 -69.08 -0.21 1.22 16 19 H 0.11 1.31 7.58 -51.93 -0.39 0.91 16 20 C -0.16 -1.51 9.38 37.16 0.35 -1.16 16 21 N -0.71 -8.22 4.90 -55.87 -0.27 -8.50 16 22 C 0.56 6.92 7.74 -12.33 -0.10 6.83 16 23 O -0.54 -7.95 16.01 5.32 0.09 -7.86 16 24 C -0.13 -1.40 5.87 -104.97 -0.62 -2.01 16 25 C -0.08 -0.73 9.54 -39.19 -0.37 -1.11 16 26 C -0.13 -0.93 10.03 -39.64 -0.40 -1.33 16 27 C -0.10 -0.63 10.04 -39.49 -0.40 -1.03 16 28 C -0.13 -0.94 10.03 -39.64 -0.40 -1.34 16 29 C -0.06 -0.56 9.60 -39.18 -0.38 -0.93 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.02 0.45 5.98 -51.93 -0.31 0.14 16 34 H 0.10 2.54 6.33 -51.93 -0.33 2.21 16 35 H 0.09 2.32 5.85 -51.93 -0.30 2.01 16 36 H 0.00 0.07 7.98 -51.93 -0.41 -0.34 16 37 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.05 0.89 8.03 -51.93 -0.42 0.47 16 39 H 0.04 0.73 7.95 -51.93 -0.41 0.32 16 40 H 0.07 1.37 5.92 -51.93 -0.31 1.06 16 41 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.40 4.17 7.89 -40.82 -0.32 3.85 16 43 H 0.07 0.59 7.56 -51.93 -0.39 0.20 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 46 H 0.41 4.57 5.83 -40.82 -0.24 4.33 16 47 H 0.13 1.01 6.41 -52.49 -0.34 0.67 16 48 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 49 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 50 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 51 H 0.14 1.25 7.65 -52.49 -0.40 0.84 16 LS Contribution 413.68 15.07 6.23 6.23 Total: -1.00 -31.27 413.68 -9.80 -41.07 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -7.93 Total: 8.34 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -2.67 Total: 2.33 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.56 Total: -56.32 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.17 Total: -17.62 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.04 Total: 15.97 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.27 -9.80 -41.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266577422.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.413 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds