Wall clock time and date at job start Wed Apr 1 2020 05:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47273 * 2 1 4 4 N 1.46496 * 109.47150 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00043 * 264.11462 * 4 3 2 6 6 H 1.08000 * 119.99895 * 188.01199 * 5 4 3 7 7 C 1.38813 * 119.99931 * 8.01887 * 5 4 3 8 8 N 1.31613 * 120.00205 * 25.64291 * 7 5 4 9 9 Si 1.86801 * 119.99976 * 205.64801 * 7 5 4 10 10 H 1.48498 * 109.47379 * 84.98316 * 9 7 5 11 11 H 1.48495 * 109.47401 * 204.98727 * 9 7 5 12 12 H 1.48510 * 109.47001 * 324.98588 * 9 7 5 13 13 C 1.46497 * 120.00062 * 84.11534 * 4 3 2 14 14 C 1.52999 * 109.47423 * 270.00198 * 13 4 3 15 15 N 1.46497 * 109.47423 * 179.97438 * 14 13 4 16 16 C 1.34771 * 120.00118 * 179.97438 * 15 14 13 17 17 O 1.21288 * 119.99913 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99998 * 179.97438 * 16 15 14 19 19 H 1.08997 * 109.47296 * 300.00222 * 18 16 15 20 20 C 1.53005 * 109.46815 * 60.00578 * 18 16 15 21 21 N 1.46508 * 109.46912 * 180.02562 * 18 16 15 22 22 C 1.34779 * 119.99712 * 155.00760 * 21 18 16 23 23 O 1.21554 * 119.99855 * 359.97438 * 22 21 18 24 24 C 1.47849 * 119.99548 * 180.02562 * 22 21 18 25 25 C 1.39568 * 120.14730 * 359.71611 * 24 22 21 26 26 C 1.37959 * 119.85161 * 179.79137 * 25 24 22 27 27 C 1.38355 * 120.14365 * 0.48801 * 26 25 24 28 28 C 1.38357 * 120.29509 * 359.74386 * 27 26 25 29 29 C 1.37954 * 120.14491 * 0.02562 * 28 27 26 30 30 H 1.09004 * 109.47470 * 59.99747 * 1 2 3 31 31 H 1.08996 * 109.47176 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47471 * 300.00112 * 1 2 3 33 33 H 1.08997 * 109.46983 * 240.00084 * 2 1 3 34 34 H 1.09003 * 109.46732 * 120.00261 * 2 1 3 35 35 H 1.09004 * 109.46679 * 60.00138 * 3 2 1 36 36 H 1.08997 * 109.47328 * 300.00248 * 3 2 1 37 37 H 0.96999 * 120.00241 * 180.02562 * 8 7 5 38 38 H 1.09005 * 109.47426 * 150.00059 * 13 4 3 39 39 H 1.08997 * 109.46912 * 29.99868 * 13 4 3 40 40 H 1.08998 * 109.47138 * 59.99241 * 14 13 4 41 41 H 1.09001 * 109.46735 * 300.00239 * 14 13 4 42 42 H 0.97000 * 120.00048 * 0.02562 * 15 14 13 43 43 H 1.08992 * 109.46781 * 299.99701 * 20 18 16 44 44 H 1.09000 * 109.47201 * 60.00213 * 20 18 16 45 45 H 1.09007 * 109.46816 * 179.97438 * 20 18 16 46 46 H 0.96994 * 120.00002 * 334.99754 * 21 18 16 47 47 H 1.08001 * 120.07364 * 0.02562 * 25 24 22 48 48 H 1.07995 * 119.92484 * 180.23307 * 26 25 24 49 49 H 1.08006 * 119.85277 * 179.71813 * 27 26 25 50 50 H 1.08002 * 119.93004 * 179.97438 * 28 27 26 51 51 H 1.07997 * 120.07561 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.5642 1.1806 6 1 5.2613 1.6943 1.1721 7 6 3.5048 1.5203 2.3875 8 7 2.3546 0.8858 2.4690 9 14 4.2162 2.3618 3.8958 10 1 3.8294 3.7955 3.8914 11 1 3.6882 1.7104 5.1214 12 1 5.6968 2.2485 3.8737 13 6 4.2380 1.3122 -1.2611 14 6 4.4931 -0.1680 -1.5523 15 7 5.2256 -0.2983 -2.8143 16 6 5.5630 -1.5192 -3.2746 17 8 5.2598 -2.5101 -2.6443 18 6 6.3160 -1.6533 -4.5731 19 1 5.7264 -1.2208 -5.3814 20 6 7.6526 -0.9163 -4.4659 21 7 6.5603 -3.0707 -4.8518 22 6 6.7439 -3.4860 -6.1208 23 8 6.7062 -2.6846 -7.0340 24 6 6.9898 -4.9165 -6.4021 25 6 7.0385 -5.8384 -5.3553 26 6 7.2642 -7.1724 -5.6251 27 6 7.4520 -7.5955 -6.9290 28 6 7.4098 -6.6860 -7.9708 29 6 7.1803 -5.3499 -7.7152 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 1.8762 0.8554 3.3123 38 1 5.1905 1.8367 -1.1838 39 1 3.6493 1.7453 -2.0697 40 1 3.5407 -0.6925 -1.6295 41 1 5.0818 -0.6011 -0.7436 42 1 5.4684 0.4941 -3.3182 43 1 7.4704 0.1381 -4.2587 44 1 8.2422 -1.3489 -3.6576 45 1 8.1975 -1.0136 -5.4050 46 1 6.5902 -3.7101 -4.1231 47 1 6.8961 -5.5088 -4.3368 48 1 7.2983 -7.8873 -4.8164 49 1 7.6329 -8.6403 -7.1344 50 1 7.5576 -7.0226 -8.9863 51 1 7.1479 -4.6409 -8.5292 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266577422.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:16 Heat of formation + Delta-G solvation = -43.715885 kcal Electronic energy + Delta-G solvation = -29943.686819 eV Core-core repulsion = 25842.944376 eV Total energy + Delta-G solvation = -4100.742443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.67783 -40.63992 -39.21026 -38.35225 -36.23929 -35.95060 -33.74454 -33.44905 -32.79722 -31.90261 -31.09576 -29.33742 -27.36105 -26.16833 -25.24447 -24.17552 -23.39868 -22.47519 -21.94528 -21.53009 -21.27928 -19.63122 -18.75090 -17.84438 -17.77066 -17.13402 -16.78637 -16.67748 -16.41485 -16.11220 -15.77232 -15.63832 -15.45542 -15.42202 -14.89818 -14.73131 -14.58412 -14.47156 -14.28770 -14.08273 -13.78878 -13.50785 -13.42114 -13.32771 -13.01715 -12.80644 -12.73418 -12.64585 -12.59543 -12.39239 -12.17968 -12.03907 -11.80406 -11.69872 -11.55164 -11.19328 -11.12660 -11.01249 -10.41635 -10.30870 -10.09024 -9.97198 -9.92738 -8.85140 -7.78847 -5.10987 -0.17741 0.39757 1.45543 1.49752 1.53062 1.58706 1.66330 1.81059 2.29706 2.57875 2.87930 3.29555 3.44740 3.63008 3.82488 3.88519 3.96925 4.00418 4.05457 4.23077 4.24026 4.31570 4.45355 4.50710 4.52670 4.60790 4.64888 4.70236 4.73352 4.84550 4.85315 4.96553 5.04394 5.07261 5.10669 5.14518 5.18600 5.26644 5.33155 5.42139 5.43839 5.45526 5.49504 5.52730 5.66567 5.88173 5.93195 6.19659 6.33000 6.37325 6.46167 7.00347 7.12700 7.23136 7.93327 8.32504 9.22071 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.001904 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.195968 B =14701.037861 C =14917.889150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.120 4.120 3 C 0.175 3.825 4 N -0.606 5.606 5 C -0.261 4.261 6 H 0.075 0.925 7 C -0.048 4.048 8 N -0.908 5.908 9 Si 0.953 3.047 10 H -0.289 1.289 11 H -0.302 1.302 12 H -0.277 1.277 13 C 0.144 3.856 14 C 0.111 3.889 15 N -0.702 5.702 16 C 0.507 3.493 17 O -0.580 6.580 18 C 0.131 3.869 19 H 0.120 0.880 20 C -0.153 4.153 21 N -0.706 5.706 22 C 0.562 3.438 23 O -0.570 6.570 24 C -0.158 4.158 25 C -0.092 4.092 26 C -0.131 4.131 27 C -0.089 4.089 28 C -0.129 4.129 29 C -0.074 4.074 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.022 0.978 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.025 0.975 37 H 0.245 0.755 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.034 0.966 42 H 0.418 0.582 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.412 0.588 47 H 0.132 0.868 48 H 0.152 0.848 49 H 0.158 0.842 50 H 0.155 0.845 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.155 -11.652 -20.090 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C 0.049 3.951 4 N -0.327 5.327 5 C -0.391 4.391 6 H 0.092 0.908 7 C -0.244 4.244 8 N -0.555 5.555 9 Si 0.783 3.217 10 H -0.216 1.216 11 H -0.229 1.229 12 H -0.202 1.202 13 C 0.016 3.984 14 C -0.015 4.015 15 N -0.354 5.354 16 C 0.292 3.708 17 O -0.460 6.460 18 C 0.023 3.977 19 H 0.137 0.863 20 C -0.211 4.211 21 N -0.359 5.359 22 C 0.351 3.649 23 O -0.451 6.451 24 C -0.161 4.161 25 C -0.111 4.111 26 C -0.149 4.149 27 C -0.107 4.107 28 C -0.147 4.147 29 C -0.093 4.093 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.255 0.745 43 H 0.116 0.884 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.250 0.750 47 H 0.150 0.850 48 H 0.169 0.831 49 H 0.175 0.825 50 H 0.172 0.828 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.804 -11.723 -20.088 25.240 hybrid contribution 0.128 0.304 1.494 1.530 sum 9.932 -11.420 -18.594 23.975 Atomic orbital electron populations 1.21532 0.96242 1.00324 1.00616 1.22017 0.94982 0.99639 0.99346 1.20811 0.81703 0.94644 0.97905 1.44409 1.02268 1.83834 1.02216 1.19487 0.92402 1.42645 0.84558 0.90765 1.25352 0.98403 1.01048 0.99577 1.70326 1.18146 1.42093 1.24905 0.85492 0.77906 0.78628 0.79653 1.21620 1.22949 1.20180 1.21099 0.97152 0.91698 0.88409 1.22206 0.94551 1.01007 0.83761 1.45839 1.56964 1.08274 1.24325 1.20966 0.79195 0.83544 0.87073 1.90694 1.56435 1.38514 1.60330 1.20829 0.98624 0.83492 0.94770 0.86264 1.22118 0.94202 1.01370 1.03405 1.45724 1.72217 1.09198 1.08805 1.18602 0.75536 0.88798 0.81959 1.90733 1.52866 1.56311 1.45158 1.19900 1.08378 0.91910 0.95912 1.21551 0.97020 0.94055 0.98464 1.21487 0.99710 0.95263 0.98422 1.21819 0.95315 1.01346 0.92207 1.21491 0.99973 0.92004 1.01248 1.21408 0.95550 0.97192 0.95184 0.92770 0.93656 0.93986 0.95927 0.92343 0.92144 0.95674 0.94508 0.91652 0.91185 0.93796 0.94725 0.74496 0.88437 0.91824 0.90856 0.74974 0.85048 0.83066 0.82468 0.82771 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.86 9.91 71.98 0.71 -4.14 16 2 C -0.12 -5.38 5.60 30.59 0.17 -5.20 16 3 C 0.17 7.98 4.92 86.38 0.43 8.41 16 4 N -0.61 -27.99 2.54 -702.01 -1.78 -29.77 16 5 C -0.26 -13.49 9.70 84.03 0.81 -12.68 16 6 H 0.07 3.75 7.94 -2.91 -0.02 3.73 16 7 C -0.05 -2.56 4.89 84.86 0.41 -2.15 16 8 N -0.91 -50.16 8.62 21.65 0.19 -49.98 16 9 Si 0.95 43.78 29.62 68.60 2.03 45.81 16 10 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 11 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 13 C 0.14 5.10 5.82 86.38 0.50 5.60 16 14 C 0.11 3.99 5.88 86.38 0.51 4.50 16 15 N -0.70 -18.47 5.45 -463.07 -2.52 -21.00 16 16 C 0.51 14.39 7.22 87.66 0.63 15.02 16 17 O -0.58 -21.42 15.84 -3.05 -0.05 -21.47 16 18 C 0.13 2.93 2.98 44.25 0.13 3.06 16 19 H 0.12 2.60 7.58 -2.39 -0.02 2.58 16 20 C -0.15 -2.66 9.38 71.98 0.68 -1.99 16 21 N -0.71 -16.47 4.90 -448.95 -2.20 -18.67 16 22 C 0.56 14.00 7.74 86.79 0.67 14.67 16 23 O -0.57 -17.01 16.01 -3.89 -0.06 -17.07 16 24 C -0.16 -3.30 5.87 -20.09 -0.12 -3.41 16 25 C -0.09 -1.57 9.54 22.52 0.21 -1.36 16 26 C -0.13 -1.66 10.03 22.23 0.22 -1.44 16 27 C -0.09 -0.94 10.04 22.33 0.22 -0.71 16 28 C -0.13 -1.61 10.03 22.23 0.22 -1.39 16 29 C -0.07 -1.36 9.60 22.53 0.22 -1.14 16 30 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.02 0.97 5.98 -2.39 -0.01 0.96 16 34 H 0.06 3.11 6.33 -2.39 -0.02 3.09 16 35 H 0.06 3.15 5.85 -2.39 -0.01 3.13 16 36 H 0.03 1.03 7.98 -2.39 -0.02 1.01 16 37 H 0.25 13.41 8.31 -92.71 -0.77 12.64 16 38 H 0.07 2.14 8.03 -2.38 -0.02 2.12 16 39 H 0.07 2.14 7.95 -2.39 -0.02 2.12 16 40 H 0.04 1.79 5.92 -2.39 -0.01 1.78 16 41 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.42 7.70 7.89 -92.71 -0.73 6.97 16 43 H 0.10 1.26 7.56 -2.39 -0.02 1.24 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.41 9.33 5.83 -92.71 -0.54 8.79 16 47 H 0.13 2.06 6.41 -2.91 -0.02 2.04 16 48 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 49 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 50 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 51 H 0.13 2.43 7.65 -2.91 -0.02 2.41 16 Total: -1.00 -69.68 413.68 1.92 -67.75 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: -0.32 Total: 28.74 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 6.65 Total: 15.65 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -6.32 Total: -119.41 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.11 Total: -38.54 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -69.68 1.92 -67.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266577422.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.038 kcal (2) G-P(sol) polarization free energy of solvation -69.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds