Wall clock time and date at job start Wed Apr 1 2020 04:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47215 * 2 1 4 4 N 1.46896 * 109.46999 * 119.99731 * 2 1 3 5 5 C 1.46905 * 111.00168 * 274.19879 * 4 2 1 6 6 C 1.53007 * 109.46617 * 76.97290 * 5 4 2 7 7 C 1.53003 * 109.47073 * 173.33794 * 6 5 4 8 8 N 1.46492 * 109.47260 * 179.97438 * 7 6 5 9 9 C 1.34780 * 120.00279 * 180.02562 * 8 7 6 10 10 O 1.21551 * 119.99405 * 359.97438 * 9 8 7 11 11 C 1.47838 * 120.00128 * 180.02562 * 9 8 7 12 12 C 1.39577 * 120.14339 * 180.02562 * 11 9 8 13 13 C 1.37958 * 119.85214 * 179.97438 * 12 11 9 14 14 C 1.38359 * 120.14715 * 0.02562 * 13 12 11 15 15 C 1.38362 * 120.28924 * 359.97438 * 14 13 12 16 16 C 1.37949 * 120.14763 * 0.02562 * 15 14 13 17 17 C 1.46900 * 110.99861 * 150.25198 * 4 2 1 18 18 C 1.50707 * 109.46958 * 286.79968 * 17 4 2 19 19 O 1.21290 * 119.99653 * 1.38887 * 18 17 4 20 20 N 1.34772 * 120.00090 * 181.38395 * 18 17 4 21 21 C 1.37099 * 120.00241 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99614 * 0.02562 * 21 20 18 23 23 C 1.38938 * 120.00202 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00334 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00018 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47177 * 60.00356 * 25 23 21 27 27 H 1.48499 * 109.47371 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47412 * 300.00399 * 25 23 21 29 29 H 1.09001 * 109.46922 * 313.57750 * 1 2 3 30 30 H 1.08999 * 109.46701 * 73.57211 * 1 2 3 31 31 H 1.08990 * 109.46956 * 193.57409 * 1 2 3 32 32 H 1.08994 * 109.47438 * 239.99757 * 2 1 3 33 33 H 1.08999 * 109.47208 * 169.02762 * 3 2 1 34 34 H 1.09003 * 109.46759 * 289.02302 * 3 2 1 35 35 H 1.09001 * 109.46901 * 49.02428 * 3 2 1 36 36 H 1.09000 * 109.47385 * 316.97788 * 5 4 2 37 37 H 1.08994 * 109.47002 * 196.96979 * 5 4 2 38 38 H 1.09003 * 109.47228 * 53.34429 * 6 5 4 39 39 H 1.08993 * 109.47141 * 293.33795 * 6 5 4 40 40 H 1.09003 * 109.46575 * 60.00236 * 7 6 5 41 41 H 1.09001 * 109.47137 * 300.00317 * 7 6 5 42 42 H 0.97003 * 119.99919 * 0.02562 * 8 7 6 43 43 H 1.07998 * 120.07284 * 359.69710 * 12 11 9 44 44 H 1.08001 * 119.92569 * 179.97438 * 13 12 11 45 45 H 1.08003 * 119.85602 * 179.97438 * 14 13 12 46 46 H 1.07999 * 119.92117 * 180.02562 * 15 14 13 47 47 H 1.07999 * 120.07601 * 179.97438 * 16 15 14 48 48 H 1.09001 * 109.47698 * 46.80190 * 17 4 2 49 49 H 1.09003 * 109.47419 * 166.80739 * 17 4 2 50 50 H 0.96998 * 120.00112 * 0.02562 * 20 18 17 51 51 H 0.97004 * 120.00339 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 2.1005 0.2272 2.3422 6 6 0.6977 0.4661 2.9047 7 6 0.7973 1.2878 4.1915 8 7 -0.5457 1.5170 4.7297 9 6 -0.7046 2.2232 5.8666 10 8 0.2665 2.6695 6.4455 11 6 -2.0600 2.4540 6.4101 12 6 -2.2280 3.1854 7.5870 13 6 -3.4956 3.3976 8.0885 14 6 -4.5988 2.8869 7.4279 15 6 -4.4391 2.1610 6.2608 16 6 -3.1771 1.9415 5.7486 17 6 3.3177 -1.3315 0.9453 18 6 3.1179 -2.5465 0.0764 19 8 2.0071 -2.8357 -0.3154 20 7 4.1735 -3.3115 -0.2654 21 6 3.9918 -4.4165 -1.0563 22 1 3.0028 -4.6737 -1.4058 23 6 5.0802 -5.2049 -1.4091 24 7 6.2836 -4.8917 -0.9842 25 14 4.8325 -6.7109 -2.4861 26 1 4.2516 -6.2977 -3.7889 27 1 6.1403 -7.3760 -2.7155 28 1 3.9085 -7.6566 -1.8099 29 1 -0.3633 0.7084 0.7445 30 1 -0.3633 0.2906 -0.9857 31 1 -0.3633 -0.9989 0.2412 32 1 1.8934 -0.5138 -0.8899 33 1 3.1123 1.4488 0.1956 34 1 1.8453 1.8967 -0.9716 35 1 1.5258 2.0097 0.7759 36 1 2.5273 1.1756 2.0159 37 1 2.7326 -0.2089 3.1155 38 1 0.2251 -0.4920 3.1212 39 1 0.1002 1.0088 2.1723 40 1 1.2700 2.2459 3.9750 41 1 1.3950 0.7450 4.9238 42 1 -1.3206 1.1605 4.2679 43 1 -1.3674 3.5804 8.1062 44 1 -3.6270 3.9630 8.9993 45 1 -5.5889 3.0555 7.8249 46 1 -5.3044 1.7654 5.7498 47 1 -3.0538 1.3745 4.8378 48 1 3.9768 -0.6266 0.4384 49 1 3.7664 -1.6319 1.8922 50 1 5.0618 -3.0803 0.0482 51 1 7.0435 -5.4420 -1.2308 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267227776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:49 Heat of formation + Delta-G solvation = -37.750612 kcal Electronic energy + Delta-G solvation = -29586.406488 eV Core-core repulsion = 25485.922718 eV Total energy + Delta-G solvation = -4100.483769 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.49272 -39.23263 -38.57370 -37.40222 -35.49018 -33.84583 -32.54073 -31.77084 -31.37906 -31.15358 -30.78928 -27.31468 -26.96471 -25.35162 -24.03386 -23.46719 -22.83419 -21.72864 -20.77126 -19.68928 -18.94285 -18.39264 -17.80150 -16.61412 -16.51439 -16.28449 -15.86619 -15.49781 -15.34195 -14.97824 -14.89019 -14.54140 -14.33589 -14.05508 -13.82315 -13.78553 -13.55382 -13.41021 -13.12974 -12.95667 -12.45120 -12.37678 -12.12973 -12.01475 -11.99996 -11.77897 -11.59299 -11.52745 -11.45034 -11.07477 -11.03996 -10.78976 -10.62490 -10.42737 -10.23103 -10.18148 -10.14451 -9.51529 -9.44520 -9.44354 -9.23473 -8.41904 -7.92695 -7.81885 -6.38473 -3.79181 0.44172 0.91478 2.55697 2.84316 3.21559 3.27041 3.31253 3.48777 3.92261 3.98897 4.24890 4.30577 4.36330 4.48685 4.69003 4.80617 4.90782 4.93909 5.03505 5.05990 5.10622 5.24179 5.25217 5.29746 5.34734 5.47453 5.48424 5.52486 5.57274 5.66187 5.74536 5.79342 5.85985 5.90940 5.93524 5.95645 5.99172 6.00181 6.07014 6.12687 6.14951 6.23882 6.33831 6.42578 6.51730 6.67126 7.19869 7.35174 7.46071 7.57614 7.91574 8.09759 8.65996 9.21746 9.58900 10.11219 10.79321 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020063 B = 0.001640 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.302078 B =17064.528984 C =17157.070139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 C -0.181 4.181 4 N -0.509 5.509 5 C 0.048 3.952 6 C -0.133 4.133 7 C 0.119 3.881 8 N -0.723 5.723 9 C 0.556 3.444 10 O -0.538 6.538 11 C -0.134 4.134 12 C -0.061 4.061 13 C -0.129 4.129 14 C -0.096 4.096 15 C -0.127 4.127 16 C -0.086 4.086 17 C 0.045 3.955 18 C 0.445 3.555 19 O -0.575 6.575 20 N -0.567 5.567 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.401 0.599 43 H 0.136 0.864 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.129 0.871 47 H 0.127 0.873 48 H 0.048 0.952 49 H 0.086 0.914 50 H 0.391 0.609 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.946 17.718 13.742 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.026 4.026 3 C -0.240 4.240 4 N -0.232 5.232 5 C -0.080 4.080 6 C -0.171 4.171 7 C -0.005 4.005 8 N -0.375 5.375 9 C 0.343 3.657 10 O -0.416 6.416 11 C -0.137 4.137 12 C -0.080 4.080 13 C -0.147 4.147 14 C -0.114 4.114 15 C -0.145 4.145 16 C -0.105 4.105 17 C -0.087 4.087 18 C 0.230 3.770 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.236 0.764 43 H 0.154 0.846 44 H 0.147 0.853 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.145 0.855 48 H 0.066 0.934 49 H 0.104 0.896 50 H 0.224 0.776 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.111 17.343 13.944 28.072 hybrid contribution 0.802 -0.255 -0.792 1.156 sum -16.309 17.088 13.152 27.036 Atomic orbital electron populations 1.21942 0.94670 1.02578 1.00247 1.21654 0.96097 0.91239 0.93634 1.22503 1.00978 0.98660 1.01852 1.61714 1.26343 1.30591 1.04549 1.22154 0.96139 0.96086 0.93663 1.22033 0.98934 1.00849 0.95278 1.21406 0.83154 1.00290 0.95610 1.45931 1.10167 1.55404 1.25951 1.18293 0.88698 0.78172 0.80522 1.90780 1.40980 1.50474 1.59369 1.19995 0.92869 1.02883 0.97972 1.21319 0.97996 0.94860 0.93825 1.21194 0.92230 1.00720 1.00541 1.21410 0.99115 0.96018 0.94897 1.21145 0.97197 0.99499 0.96697 1.21357 0.92234 0.97822 0.99092 1.21905 0.90291 0.96050 1.00426 1.19777 0.85673 0.85983 0.85556 1.90511 1.24132 1.73113 1.58105 1.41865 1.08519 1.24409 1.45669 1.19628 0.95810 1.01826 1.25472 0.88049 1.25235 0.94704 0.99548 0.98476 1.69603 0.98858 1.40126 1.45883 0.85937 0.77257 0.81000 0.80114 1.19991 1.21028 1.19956 0.93157 0.93308 0.91085 0.89554 0.92838 0.92411 0.92324 0.93238 0.91029 0.90121 0.90373 0.91447 0.91174 0.76393 0.84627 0.85276 0.85532 0.85262 0.85490 0.93358 0.89561 0.77580 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.81 37.16 0.33 -1.49 16 2 C 0.08 1.22 2.24 -67.71 -0.15 1.07 16 3 C -0.18 -2.15 7.76 37.16 0.29 -1.86 16 4 N -0.51 -7.87 3.95 -228.07 -0.90 -8.78 16 5 C 0.05 0.57 4.50 -3.82 -0.02 0.55 16 6 C -0.13 -1.32 4.72 -26.73 -0.13 -1.44 16 7 C 0.12 1.16 5.67 -4.04 -0.02 1.14 16 8 N -0.72 -6.56 5.51 -61.25 -0.34 -6.90 16 9 C 0.56 6.22 7.77 -12.33 -0.10 6.13 16 10 O -0.54 -7.95 16.35 5.32 0.09 -7.86 16 11 C -0.13 -1.22 5.87 -104.97 -0.62 -1.84 16 12 C -0.06 -0.52 9.60 -39.18 -0.38 -0.90 16 13 C -0.13 -0.83 10.03 -39.64 -0.40 -1.23 16 14 C -0.10 -0.54 10.04 -39.49 -0.40 -0.94 16 15 C -0.13 -0.74 10.03 -39.64 -0.40 -1.14 16 16 C -0.09 -0.59 9.54 -39.19 -0.37 -0.97 16 17 C 0.04 0.78 5.37 -4.97 -0.03 0.75 16 18 C 0.44 10.34 7.29 -10.98 -0.08 10.26 16 19 O -0.58 -15.20 14.85 5.55 0.08 -15.12 16 20 N -0.57 -14.31 5.29 -10.96 -0.06 -14.36 16 21 C -0.30 -8.28 9.68 -14.94 -0.14 -8.42 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.62 13.05 55.49 0.72 -23.89 16 25 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.05 0.54 5.00 -51.93 -0.26 0.28 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.09 1.59 6.65 -51.93 -0.35 1.24 16 33 H 0.05 0.64 7.13 -51.93 -0.37 0.27 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.61 6.17 -51.93 -0.32 0.29 16 36 H 0.05 0.54 5.14 -51.93 -0.27 0.28 16 37 H 0.07 0.83 7.60 -51.93 -0.39 0.43 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.73 4.59 -51.93 -0.24 0.49 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.40 2.67 6.51 -40.82 -0.27 2.40 16 43 H 0.14 1.19 7.65 -52.49 -0.40 0.79 16 44 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.13 0.42 8.06 -52.48 -0.42 0.00 16 46 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 47 H 0.13 0.61 6.41 -52.49 -0.34 0.27 16 48 H 0.05 0.78 7.51 -51.93 -0.39 0.39 16 49 H 0.09 1.37 7.64 -51.93 -0.40 0.97 16 50 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 51 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 408.67 15.07 6.16 6.16 Total: -1.00 -33.59 408.67 -9.59 -43.18 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -7.62 Total: 11.34 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -2.70 Total: 0.14 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.57 Total: -53.93 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.17 Total: -22.98 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.59 -9.59 -43.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267227776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.429 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds