Wall clock time and date at job start Wed Apr 1 2020 04:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47215 * 2 1 4 4 N 1.46896 * 109.46999 * 119.99731 * 2 1 3 5 5 C 1.46905 * 111.00168 * 274.19879 * 4 2 1 6 6 C 1.53007 * 109.46617 * 76.97290 * 5 4 2 7 7 C 1.53003 * 109.47073 * 173.33794 * 6 5 4 8 8 N 1.46492 * 109.47260 * 179.97438 * 7 6 5 9 9 C 1.34780 * 120.00279 * 180.02562 * 8 7 6 10 10 O 1.21551 * 119.99405 * 359.97438 * 9 8 7 11 11 C 1.47838 * 120.00128 * 180.02562 * 9 8 7 12 12 C 1.39577 * 120.14339 * 180.02562 * 11 9 8 13 13 C 1.37958 * 119.85214 * 179.97438 * 12 11 9 14 14 C 1.38359 * 120.14715 * 0.02562 * 13 12 11 15 15 C 1.38362 * 120.28924 * 359.97438 * 14 13 12 16 16 C 1.37949 * 120.14763 * 0.02562 * 15 14 13 17 17 C 1.46900 * 110.99861 * 150.25198 * 4 2 1 18 18 C 1.50707 * 109.46958 * 286.79968 * 17 4 2 19 19 O 1.21290 * 119.99653 * 1.38887 * 18 17 4 20 20 N 1.34772 * 120.00090 * 181.38395 * 18 17 4 21 21 C 1.37099 * 120.00241 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99614 * 0.02562 * 21 20 18 23 23 C 1.38938 * 120.00202 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00334 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00018 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47177 * 60.00356 * 25 23 21 27 27 H 1.48499 * 109.47371 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47412 * 300.00399 * 25 23 21 29 29 H 1.09001 * 109.46922 * 313.57750 * 1 2 3 30 30 H 1.08999 * 109.46701 * 73.57211 * 1 2 3 31 31 H 1.08990 * 109.46956 * 193.57409 * 1 2 3 32 32 H 1.08994 * 109.47438 * 239.99757 * 2 1 3 33 33 H 1.08999 * 109.47208 * 169.02762 * 3 2 1 34 34 H 1.09003 * 109.46759 * 289.02302 * 3 2 1 35 35 H 1.09001 * 109.46901 * 49.02428 * 3 2 1 36 36 H 1.09000 * 109.47385 * 316.97788 * 5 4 2 37 37 H 1.08994 * 109.47002 * 196.96979 * 5 4 2 38 38 H 1.09003 * 109.47228 * 53.34429 * 6 5 4 39 39 H 1.08993 * 109.47141 * 293.33795 * 6 5 4 40 40 H 1.09003 * 109.46575 * 60.00236 * 7 6 5 41 41 H 1.09001 * 109.47137 * 300.00317 * 7 6 5 42 42 H 0.97003 * 119.99919 * 0.02562 * 8 7 6 43 43 H 1.07998 * 120.07284 * 359.69710 * 12 11 9 44 44 H 1.08001 * 119.92569 * 179.97438 * 13 12 11 45 45 H 1.08003 * 119.85602 * 179.97438 * 14 13 12 46 46 H 1.07999 * 119.92117 * 180.02562 * 15 14 13 47 47 H 1.07999 * 120.07601 * 179.97438 * 16 15 14 48 48 H 1.09001 * 109.47698 * 46.80190 * 17 4 2 49 49 H 1.09003 * 109.47419 * 166.80739 * 17 4 2 50 50 H 0.96998 * 120.00112 * 0.02562 * 20 18 17 51 51 H 0.97004 * 120.00339 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 2.1005 0.2272 2.3422 6 6 0.6977 0.4661 2.9047 7 6 0.7973 1.2878 4.1915 8 7 -0.5457 1.5170 4.7297 9 6 -0.7046 2.2232 5.8666 10 8 0.2665 2.6695 6.4455 11 6 -2.0600 2.4540 6.4101 12 6 -2.2280 3.1854 7.5870 13 6 -3.4956 3.3976 8.0885 14 6 -4.5988 2.8869 7.4279 15 6 -4.4391 2.1610 6.2608 16 6 -3.1771 1.9415 5.7486 17 6 3.3177 -1.3315 0.9453 18 6 3.1179 -2.5465 0.0764 19 8 2.0071 -2.8357 -0.3154 20 7 4.1735 -3.3115 -0.2654 21 6 3.9918 -4.4165 -1.0563 22 1 3.0028 -4.6737 -1.4058 23 6 5.0802 -5.2049 -1.4091 24 7 6.2836 -4.8917 -0.9842 25 14 4.8325 -6.7109 -2.4861 26 1 4.2516 -6.2977 -3.7889 27 1 6.1403 -7.3760 -2.7155 28 1 3.9085 -7.6566 -1.8099 29 1 -0.3633 0.7084 0.7445 30 1 -0.3633 0.2906 -0.9857 31 1 -0.3633 -0.9989 0.2412 32 1 1.8934 -0.5138 -0.8899 33 1 3.1123 1.4488 0.1956 34 1 1.8453 1.8967 -0.9716 35 1 1.5258 2.0097 0.7759 36 1 2.5273 1.1756 2.0159 37 1 2.7326 -0.2089 3.1155 38 1 0.2251 -0.4920 3.1212 39 1 0.1002 1.0088 2.1723 40 1 1.2700 2.2459 3.9750 41 1 1.3950 0.7450 4.9238 42 1 -1.3206 1.1605 4.2679 43 1 -1.3674 3.5804 8.1062 44 1 -3.6270 3.9630 8.9993 45 1 -5.5889 3.0555 7.8249 46 1 -5.3044 1.7654 5.7498 47 1 -3.0538 1.3745 4.8378 48 1 3.9768 -0.6266 0.4384 49 1 3.7664 -1.6319 1.8922 50 1 5.0618 -3.0803 0.0482 51 1 7.0435 -5.4420 -1.2308 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267227776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:48 Heat of formation + Delta-G solvation = -60.906878 kcal Electronic energy + Delta-G solvation = -29587.410619 eV Core-core repulsion = 25485.922718 eV Total energy + Delta-G solvation = -4101.487900 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.23130 -40.61534 -39.30628 -38.92720 -36.42357 -35.84069 -33.39578 -33.29628 -32.69710 -31.89246 -31.61320 -28.56696 -28.08311 -26.72258 -25.39528 -24.30147 -23.39423 -22.61028 -21.61220 -21.10237 -20.39834 -19.78854 -19.03984 -17.71097 -17.52917 -17.27022 -16.89607 -16.54297 -16.42743 -16.39486 -15.81597 -15.73540 -15.47123 -15.25930 -15.10771 -14.71388 -14.63112 -14.35697 -14.18770 -13.90051 -13.56141 -13.49147 -13.40299 -13.31823 -12.97495 -12.93383 -12.70412 -12.66335 -12.56775 -12.41074 -12.15757 -12.12080 -12.01025 -11.94527 -11.66462 -11.43906 -11.15707 -11.08629 -10.26055 -10.25516 -9.96805 -9.94395 -9.85483 -9.08005 -8.43756 -5.92184 -0.13429 0.42394 1.40366 1.41569 1.52452 1.84237 2.07215 2.11224 2.30333 2.80532 2.91529 3.23163 3.45488 3.67813 3.89076 3.90538 3.99627 4.03609 4.16824 4.20983 4.24847 4.29796 4.36025 4.45312 4.47769 4.51517 4.55212 4.56135 4.58450 4.70114 4.76453 4.82037 4.88188 4.91403 5.01030 5.06760 5.07409 5.12765 5.26195 5.32528 5.38963 5.42593 5.46085 5.50681 5.52332 5.58323 5.95781 5.95923 6.17887 6.34766 6.47651 6.64636 7.13566 7.16481 7.61290 8.17605 8.73467 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020063 B = 0.001640 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.302078 B =17064.528984 C =17157.070139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.080 3.920 3 C -0.173 4.173 4 N -0.525 5.525 5 C 0.047 3.953 6 C -0.118 4.118 7 C 0.126 3.874 8 N -0.712 5.712 9 C 0.552 3.448 10 O -0.584 6.584 11 C -0.157 4.157 12 C -0.082 4.082 13 C -0.132 4.132 14 C -0.092 4.092 15 C -0.130 4.130 16 C -0.087 4.087 17 C 0.057 3.943 18 C 0.443 3.557 19 O -0.611 6.611 20 N -0.579 5.579 21 C -0.331 4.331 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.414 0.586 43 H 0.121 0.879 44 H 0.149 0.851 45 H 0.155 0.845 46 H 0.156 0.844 47 H 0.146 0.854 48 H 0.065 0.935 49 H 0.105 0.895 50 H 0.394 0.606 51 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.640 18.659 14.101 29.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.029 4.029 3 C -0.231 4.231 4 N -0.249 5.249 5 C -0.081 4.081 6 C -0.156 4.156 7 C 0.002 3.998 8 N -0.364 5.364 9 C 0.341 3.659 10 O -0.466 6.466 11 C -0.160 4.160 12 C -0.101 4.101 13 C -0.150 4.150 14 C -0.110 4.110 15 C -0.147 4.147 16 C -0.106 4.106 17 C -0.075 4.075 18 C 0.230 3.770 19 O -0.496 6.496 20 N -0.217 5.217 21 C -0.460 4.460 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.251 0.749 43 H 0.139 0.861 44 H 0.166 0.834 45 H 0.173 0.827 46 H 0.173 0.827 47 H 0.164 0.836 48 H 0.083 0.917 49 H 0.123 0.877 50 H 0.228 0.772 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.819 18.292 14.297 29.885 hybrid contribution 1.229 -0.514 -0.872 1.592 sum -17.590 17.777 13.425 28.384 Atomic orbital electron populations 1.21888 0.93582 1.01701 1.01627 1.21619 0.96992 0.92556 0.91708 1.22409 1.01021 0.96523 1.03136 1.61680 1.25220 1.32209 1.05804 1.22255 0.97509 0.95998 0.92355 1.21859 0.97851 1.00519 0.95330 1.21275 0.83410 1.00026 0.95127 1.45831 1.10486 1.54631 1.25412 1.18697 0.89160 0.77561 0.80478 1.90746 1.42529 1.52544 1.60760 1.19956 0.92393 1.04748 0.98929 1.21388 0.98697 0.95745 0.94229 1.21450 0.91580 1.00722 1.01257 1.21813 1.00050 0.94710 0.94474 1.21525 0.97522 0.98945 0.96748 1.21596 0.91989 0.97472 0.99542 1.21748 0.91911 0.93830 0.99970 1.20835 0.84564 0.86750 0.84821 1.90479 1.25508 1.74297 1.59319 1.41947 1.09181 1.24497 1.46064 1.19603 0.95321 1.03727 1.27371 0.90377 1.26005 0.94218 1.01874 0.99275 1.69670 0.99315 1.41035 1.46340 0.85009 0.77648 0.77513 0.78275 1.19738 1.19591 1.19811 0.90142 0.92647 0.93965 0.93974 0.92884 0.91652 0.90168 0.91630 0.90655 0.90965 0.89320 0.91427 0.92267 0.74857 0.86061 0.83361 0.82733 0.82674 0.83623 0.91704 0.87692 0.77218 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.81 71.98 0.63 -2.71 16 2 C 0.08 2.31 2.24 44.92 0.10 2.41 16 3 C -0.17 -3.70 7.76 71.98 0.56 -3.14 16 4 N -0.53 -15.84 3.95 -875.48 -3.46 -19.30 16 5 C 0.05 1.01 4.50 86.30 0.39 1.40 16 6 C -0.12 -2.10 4.72 30.60 0.14 -1.96 16 7 C 0.13 2.28 5.67 86.38 0.49 2.77 16 8 N -0.71 -12.14 5.51 -465.99 -2.57 -14.70 16 9 C 0.55 12.39 7.77 86.78 0.67 13.06 16 10 O -0.58 -17.87 16.35 -3.88 -0.06 -17.93 16 11 C -0.16 -2.81 5.87 -20.09 -0.12 -2.93 16 12 C -0.08 -1.41 9.60 22.53 0.22 -1.19 16 13 C -0.13 -1.51 10.03 22.23 0.22 -1.29 16 14 C -0.09 -0.78 10.04 22.33 0.22 -0.56 16 15 C -0.13 -1.14 10.03 22.23 0.22 -0.91 16 16 C -0.09 -1.03 9.54 22.53 0.21 -0.82 16 17 C 0.06 1.95 5.37 85.56 0.46 2.41 16 18 C 0.44 21.11 7.29 87.66 0.64 21.75 16 19 O -0.61 -33.48 14.85 -3.06 -0.05 -33.52 16 20 N -0.58 -29.98 5.29 -306.99 -1.62 -31.61 16 21 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 22 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 23 C -0.01 -0.77 5.50 84.92 0.47 -0.31 16 24 N -0.92 -50.34 13.05 21.66 0.28 -50.06 16 25 Si 0.99 43.37 29.55 68.60 2.03 45.40 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 29 H 0.08 1.52 5.00 -2.39 -0.01 1.51 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.04 1.59 6.65 -2.39 -0.02 1.58 16 33 H 0.05 1.15 7.13 -2.39 -0.02 1.13 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.38 6.17 -2.39 -0.01 1.36 16 36 H 0.07 1.25 5.14 -2.39 -0.01 1.23 16 37 H 0.07 1.60 7.60 -2.39 -0.02 1.58 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.09 1.39 4.59 -2.39 -0.01 1.38 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.41 4.72 6.51 -92.71 -0.60 4.12 16 43 H 0.12 2.32 7.65 -2.91 -0.02 2.30 16 44 H 0.15 1.01 8.06 -2.91 -0.02 0.98 16 45 H 0.15 0.42 8.06 -2.91 -0.02 0.40 16 46 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 47 H 0.15 1.02 6.41 -2.91 -0.02 1.01 16 48 H 0.07 2.03 7.51 -2.39 -0.02 2.01 16 49 H 0.11 3.22 7.64 -2.39 -0.02 3.20 16 50 H 0.39 19.51 7.90 -92.71 -0.73 18.78 16 51 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -75.97 408.67 0.53 -75.43 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: -0.37 Total: 36.39 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 6.35 Total: 9.89 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -7.37 Total: -115.66 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -0.11 Total: -51.45 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -75.97 0.53 -75.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267227776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.525 kcal (2) G-P(sol) polarization free energy of solvation -75.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds