Wall clock time and date at job start Wed Apr 1 2020 04:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46893 * 2 1 4 4 N 1.46506 * 109.47045 * 179.97438 * 3 2 1 5 5 C 1.36938 * 119.99594 * 275.90037 * 4 3 2 6 6 H 1.07994 * 120.00393 * 34.17921 * 5 4 3 7 7 C 1.38809 * 119.99455 * 214.17667 * 5 4 3 8 8 N 1.31619 * 120.00342 * 7.84754 * 7 5 4 9 9 Si 1.86802 * 120.00063 * 187.84724 * 7 5 4 10 10 H 1.48503 * 109.46907 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47240 * 119.99994 * 9 7 5 12 12 H 1.48496 * 109.47476 * 240.00534 * 9 7 5 13 13 C 1.46497 * 119.99990 * 95.90063 * 4 3 2 14 14 C 1.53002 * 109.46784 * 270.00137 * 13 4 3 15 15 N 1.46497 * 109.46784 * 179.97438 * 14 13 4 16 16 C 1.34777 * 120.00360 * 179.97438 * 15 14 13 17 17 O 1.21530 * 119.99442 * 359.97438 * 16 15 14 18 18 C 1.48028 * 120.00526 * 180.02562 * 16 15 14 19 19 C 1.39558 * 120.00284 * 180.02562 * 18 16 15 20 20 C 1.37813 * 120.00259 * 180.02562 * 19 18 16 21 21 C 1.39559 * 119.99974 * 0.02562 * 20 19 18 22 22 C 1.48035 * 120.00259 * 179.97438 * 21 20 19 23 23 O 1.21525 * 120.00420 * 200.53683 * 22 21 20 24 24 N 1.34783 * 119.99707 * 20.25579 * 22 21 20 25 25 C 1.46502 * 119.99881 * 170.84825 * 24 22 21 26 26 C 1.46499 * 120.00080 * 350.84484 * 24 22 21 27 27 C 1.39556 * 119.99811 * 0.23932 * 21 20 19 28 28 C 1.37820 * 120.00190 * 359.48371 * 27 21 20 29 29 H 1.08995 * 109.46879 * 60.00161 * 1 2 3 30 30 H 1.09008 * 109.47054 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47106 * 299.99760 * 1 2 3 32 32 H 1.09001 * 109.47519 * 239.99983 * 2 1 3 33 33 H 1.08995 * 109.46879 * 119.99839 * 2 1 3 34 34 H 1.09010 * 109.47072 * 59.99929 * 3 2 1 35 35 H 1.08995 * 109.47227 * 299.99626 * 3 2 1 36 36 H 0.97003 * 120.00144 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.46910 * 149.99769 * 13 4 3 38 38 H 1.09000 * 109.47043 * 29.99880 * 13 4 3 39 39 H 1.09000 * 109.47300 * 60.00287 * 14 13 4 40 40 H 1.09000 * 109.47121 * 299.99695 * 14 13 4 41 41 H 0.97005 * 120.00491 * 0.02562 * 15 14 13 42 42 H 1.07997 * 119.99761 * 359.97438 * 19 18 16 43 43 H 1.08002 * 120.00389 * 180.02562 * 20 19 18 44 44 H 1.08996 * 109.47437 * 89.99860 * 25 24 22 45 45 H 1.08998 * 109.46528 * 210.00290 * 25 24 22 46 46 H 1.09001 * 109.46825 * 330.00018 * 25 24 22 47 47 H 1.09002 * 109.47069 * 52.05664 * 26 24 22 48 48 H 1.08998 * 109.47267 * 172.05691 * 26 24 22 49 49 H 1.09000 * 109.47220 * 292.05880 * 26 24 22 50 50 H 1.08007 * 119.99773 * 179.74259 * 27 21 20 51 51 H 1.07997 * 120.00202 * 180.23043 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.3208 1.1806 6 1 3.7887 0.7105 1.9765 7 6 5.3973 1.9820 1.3537 8 7 5.8104 2.8453 0.4502 9 14 6.4371 1.6463 2.8689 10 1 5.7556 0.6417 3.7242 11 1 7.7635 1.1237 2.4532 12 1 6.6189 2.9063 3.6335 13 6 4.2380 1.5728 -1.2611 14 6 4.4932 0.1832 -1.8483 15 7 5.2257 0.3135 -3.1103 16 6 5.5634 -0.7876 -3.8104 17 8 5.2605 -1.8886 -3.3944 18 6 6.3040 -0.6560 -5.0853 19 6 6.6531 -1.7962 -5.8104 20 6 7.3431 -1.6737 -6.9971 21 6 7.6932 -0.4095 -7.4734 22 6 8.4348 -0.2779 -8.7478 23 8 9.0592 0.7373 -8.9855 24 7 8.4223 -1.2863 -9.6420 25 6 8.9830 -1.0854 -10.9805 26 6 7.8480 -2.5832 -9.2755 27 6 7.3489 0.7304 -6.7456 28 6 6.6539 0.6082 -5.5617 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8901 35 1 1.6767 1.9563 -0.8900 36 1 6.6546 3.3076 0.5713 37 1 5.1903 2.0706 -1.0783 38 1 3.6492 2.1619 -1.9642 39 1 3.5409 -0.3145 -2.0312 40 1 5.0821 -0.4059 -1.1452 41 1 5.4684 1.1922 -3.4419 42 1 6.3833 -2.7745 -5.4412 43 1 7.6129 -2.5560 -7.5585 44 1 10.0411 -1.3469 -10.9743 45 1 8.4562 -1.7191 -11.6939 46 1 8.8687 -0.0405 -11.2692 47 1 6.8445 -2.4364 -8.8760 48 1 7.7979 -3.2209 -10.1581 49 1 8.4741 -3.0573 -8.5197 50 1 7.6235 1.7085 -7.1121 51 1 6.3842 1.4905 -5.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267319340.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:24 Heat of formation + Delta-G solvation = 5.896206 kcal Electronic energy + Delta-G solvation = -29927.000316 eV Core-core repulsion = 25828.409215 eV Total energy + Delta-G solvation = -4098.591101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.86708 -39.63316 -37.88391 -36.48970 -36.19306 -34.33256 -32.97110 -32.08657 -31.24850 -30.68418 -28.74951 -27.99184 -26.99923 -25.58056 -24.40315 -23.22913 -22.64972 -20.95684 -20.60596 -20.24324 -20.03592 -17.87477 -17.62518 -16.72849 -16.59450 -16.23808 -15.72678 -15.23326 -15.10348 -14.78587 -14.63523 -14.50859 -14.28892 -13.90920 -13.85570 -13.57428 -13.46104 -13.28295 -12.99884 -12.95881 -12.85045 -12.74949 -12.60199 -12.29485 -11.90556 -11.67334 -11.50347 -11.14838 -10.96462 -10.90271 -10.77994 -10.42791 -10.36071 -10.27055 -10.04750 -9.89720 -9.76246 -9.55722 -9.31589 -9.22697 -9.06216 -8.66423 -8.45513 -6.69013 -5.73656 -3.46908 0.33082 1.12948 2.30489 2.53262 3.09988 3.33066 3.41413 3.43139 3.48934 3.80137 4.05376 4.40582 4.42856 4.59537 4.68425 4.78134 4.83544 4.87940 5.06957 5.10490 5.12612 5.21569 5.30652 5.36201 5.44544 5.46076 5.64403 5.74696 5.75962 5.91511 5.96414 6.01861 6.06315 6.11840 6.17491 6.25978 6.29461 6.43471 6.52992 6.55561 6.60022 6.67016 6.85322 6.86694 6.94495 7.06713 7.16314 7.66392 7.74146 7.84275 7.91640 8.49670 8.52866 9.16322 9.76542 10.28042 11.16398 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013783 B = 0.002140 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.009728 B =13078.319512 C =14164.642544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.147 3.853 4 N -0.582 5.582 5 C -0.243 4.243 6 H 0.065 0.935 7 C 0.001 3.999 8 N -0.900 5.900 9 Si 0.908 3.092 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.109 3.891 14 C 0.100 3.900 15 N -0.708 5.708 16 C 0.545 3.455 17 O -0.542 6.542 18 C -0.099 4.099 19 C -0.073 4.073 20 C -0.139 4.139 21 C -0.120 4.120 22 C 0.559 3.441 23 O -0.531 6.531 24 N -0.619 5.619 25 C 0.087 3.913 26 C 0.063 3.937 27 C -0.067 4.067 28 C -0.095 4.095 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.036 0.964 36 H 0.255 0.745 37 H 0.139 0.861 38 H 0.022 0.978 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.397 0.603 42 H 0.142 0.858 43 H 0.169 0.831 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.074 0.926 50 H 0.139 0.861 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 -8.446 -20.743 22.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.020 3.980 4 N -0.301 5.301 5 C -0.373 4.373 6 H 0.083 0.917 7 C -0.196 4.196 8 N -0.546 5.546 9 Si 0.738 3.262 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.018 4.018 14 C -0.025 4.025 15 N -0.358 5.358 16 C 0.330 3.670 17 O -0.421 6.421 18 C -0.102 4.102 19 C -0.092 4.092 20 C -0.156 4.156 21 C -0.124 4.124 22 C 0.349 3.651 23 O -0.408 6.408 24 N -0.353 5.353 25 C -0.055 4.055 26 C -0.079 4.079 27 C -0.086 4.086 28 C -0.114 4.114 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.155 0.845 38 H 0.040 0.960 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.232 0.768 42 H 0.160 0.840 43 H 0.186 0.814 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.092 0.908 50 H 0.157 0.843 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.894 -8.546 -20.505 22.295 hybrid contribution 0.640 0.059 0.588 0.871 sum 2.535 -8.487 -19.917 21.798 Atomic orbital electron populations 1.21723 0.97319 1.00428 1.00986 1.22198 0.93832 1.00933 1.01619 1.20948 0.85041 0.93079 0.98919 1.43690 0.99386 1.84456 1.02604 1.19227 1.03009 1.22290 0.92727 0.91690 1.25205 0.99960 0.96330 0.98127 1.69390 1.22516 1.28295 1.34359 0.86116 0.80034 0.77571 0.82490 1.20171 1.21523 1.21524 1.21788 1.03045 0.91394 0.85604 1.22498 0.94405 1.03255 0.82345 1.46094 1.57007 1.08365 1.24380 1.18315 0.79751 0.85003 0.83904 1.90747 1.55256 1.25962 1.70175 1.20428 0.99662 0.94340 0.95788 1.21297 0.95746 0.98938 0.93201 1.22885 0.97561 0.98459 0.96717 1.19947 1.01871 0.94797 0.95766 1.18447 0.80387 0.82670 0.83605 1.90778 1.42459 1.29887 1.77670 1.47592 1.60960 1.12549 1.14207 1.21706 0.98566 1.03281 0.81996 1.22577 0.99207 0.84352 1.01757 1.21166 0.95423 0.98526 0.93447 1.21391 0.97161 0.97003 0.95814 0.93463 0.93793 0.93209 0.92884 0.92374 0.93689 0.94559 0.93390 0.84500 0.96000 0.93369 0.91752 0.76788 0.84030 0.81434 0.92514 0.90952 0.90530 0.89884 0.90309 0.90798 0.84284 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.15 -2.65 6.22 -26.73 -0.17 -2.82 16 3 C 0.15 2.99 5.72 -4.04 -0.02 2.97 16 4 N -0.58 -13.89 2.49 -173.24 -0.43 -14.32 16 5 C -0.24 -6.38 9.57 -15.06 -0.14 -6.53 16 6 H 0.07 1.71 7.84 -52.49 -0.41 1.30 16 7 C 0.00 0.03 5.29 -17.43 -0.09 -0.06 16 8 N -0.90 -24.42 10.48 55.49 0.58 -23.84 16 9 Si 0.91 21.31 29.56 -169.99 -5.02 16.29 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.11 2.41 5.46 -4.04 -0.02 2.39 16 14 C 0.10 2.05 6.00 -4.04 -0.02 2.03 16 15 N -0.71 -12.13 5.51 -61.19 -0.34 -12.46 16 16 C 0.54 9.35 7.78 -12.25 -0.10 9.26 16 17 O -0.54 -11.13 16.34 5.34 0.09 -11.04 16 18 C -0.10 -1.34 5.88 -104.90 -0.62 -1.96 16 19 C -0.07 -0.85 9.58 -39.24 -0.38 -1.22 16 20 C -0.14 -1.30 7.90 -39.24 -0.31 -1.61 16 21 C -0.12 -1.32 5.78 -104.90 -0.61 -1.93 16 22 C 0.56 6.38 7.54 -12.24 -0.09 6.29 16 23 O -0.53 -7.82 16.21 5.34 0.09 -7.73 16 24 N -0.62 -4.95 3.27 -200.76 -0.66 -5.61 16 25 C 0.09 0.54 10.37 59.85 0.62 1.16 16 26 C 0.06 0.28 8.59 59.85 0.51 0.80 16 27 C -0.07 -0.76 9.57 -39.24 -0.38 -1.14 16 28 C -0.09 -1.12 9.53 -39.24 -0.37 -1.49 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.59 8.14 -51.92 -0.42 0.16 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 1.00 6.69 -51.93 -0.35 0.65 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.04 0.93 8.09 -51.92 -0.42 0.51 16 35 H 0.04 0.70 7.83 -51.93 -0.41 0.29 16 36 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 37 H 0.14 3.42 4.69 -51.93 -0.24 3.18 16 38 H 0.02 0.45 7.86 -51.93 -0.41 0.04 16 39 H 0.05 1.01 6.69 -51.93 -0.35 0.66 16 40 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 41 H 0.40 5.80 6.50 -40.82 -0.27 5.54 16 42 H 0.14 1.59 7.64 -52.49 -0.40 1.19 16 43 H 0.17 1.01 2.99 -64.80 -0.19 0.82 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.25 7.86 -51.93 -0.41 -0.16 16 46 H 0.08 0.57 7.57 -51.93 -0.39 0.18 16 47 H 0.08 0.37 6.00 -51.93 -0.31 0.06 16 48 H 0.08 0.18 7.76 -51.93 -0.40 -0.23 16 49 H 0.07 0.28 6.57 -51.93 -0.34 -0.07 16 50 H 0.14 1.50 7.78 -52.48 -0.41 1.09 16 51 H 0.14 1.39 6.39 -52.49 -0.34 1.06 16 LS Contribution 409.75 15.07 6.17 6.17 Total: -1.00 -33.11 409.75 -9.05 -42.16 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -7.72 Total: 6.01 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -1.82 Total: 4.37 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.84 Total: -56.23 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.17 Total: -18.77 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.11 -9.05 -42.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267319340.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.059 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds