Wall clock time and date at job start Wed Apr 1 2020 04:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46893 * 2 1 4 4 N 1.46506 * 109.47045 * 179.97438 * 3 2 1 5 5 C 1.36938 * 119.99594 * 275.90037 * 4 3 2 6 6 H 1.07994 * 120.00393 * 34.17921 * 5 4 3 7 7 C 1.38809 * 119.99455 * 214.17667 * 5 4 3 8 8 N 1.31619 * 120.00342 * 7.84754 * 7 5 4 9 9 Si 1.86802 * 120.00063 * 187.84724 * 7 5 4 10 10 H 1.48503 * 109.46907 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47240 * 119.99994 * 9 7 5 12 12 H 1.48496 * 109.47476 * 240.00534 * 9 7 5 13 13 C 1.46497 * 119.99990 * 95.90063 * 4 3 2 14 14 C 1.53002 * 109.46784 * 270.00137 * 13 4 3 15 15 N 1.46497 * 109.46784 * 179.97438 * 14 13 4 16 16 C 1.34777 * 120.00360 * 179.97438 * 15 14 13 17 17 O 1.21530 * 119.99442 * 359.97438 * 16 15 14 18 18 C 1.48028 * 120.00526 * 180.02562 * 16 15 14 19 19 C 1.39558 * 120.00284 * 180.02562 * 18 16 15 20 20 C 1.37813 * 120.00259 * 180.02562 * 19 18 16 21 21 C 1.39559 * 119.99974 * 0.02562 * 20 19 18 22 22 C 1.48035 * 120.00259 * 179.97438 * 21 20 19 23 23 O 1.21525 * 120.00420 * 200.53683 * 22 21 20 24 24 N 1.34783 * 119.99707 * 20.25579 * 22 21 20 25 25 C 1.46502 * 119.99881 * 170.84825 * 24 22 21 26 26 C 1.46499 * 120.00080 * 350.84484 * 24 22 21 27 27 C 1.39556 * 119.99811 * 0.23932 * 21 20 19 28 28 C 1.37820 * 120.00190 * 359.48371 * 27 21 20 29 29 H 1.08995 * 109.46879 * 60.00161 * 1 2 3 30 30 H 1.09008 * 109.47054 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47106 * 299.99760 * 1 2 3 32 32 H 1.09001 * 109.47519 * 239.99983 * 2 1 3 33 33 H 1.08995 * 109.46879 * 119.99839 * 2 1 3 34 34 H 1.09010 * 109.47072 * 59.99929 * 3 2 1 35 35 H 1.08995 * 109.47227 * 299.99626 * 3 2 1 36 36 H 0.97003 * 120.00144 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.46910 * 149.99769 * 13 4 3 38 38 H 1.09000 * 109.47043 * 29.99880 * 13 4 3 39 39 H 1.09000 * 109.47300 * 60.00287 * 14 13 4 40 40 H 1.09000 * 109.47121 * 299.99695 * 14 13 4 41 41 H 0.97005 * 120.00491 * 0.02562 * 15 14 13 42 42 H 1.07997 * 119.99761 * 359.97438 * 19 18 16 43 43 H 1.08002 * 120.00389 * 180.02562 * 20 19 18 44 44 H 1.08996 * 109.47437 * 89.99860 * 25 24 22 45 45 H 1.08998 * 109.46528 * 210.00290 * 25 24 22 46 46 H 1.09001 * 109.46825 * 330.00018 * 25 24 22 47 47 H 1.09002 * 109.47069 * 52.05664 * 26 24 22 48 48 H 1.08998 * 109.47267 * 172.05691 * 26 24 22 49 49 H 1.09000 * 109.47220 * 292.05880 * 26 24 22 50 50 H 1.08007 * 119.99773 * 179.74259 * 27 21 20 51 51 H 1.07997 * 120.00202 * 180.23043 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.3208 1.1806 6 1 3.7887 0.7105 1.9765 7 6 5.3973 1.9820 1.3537 8 7 5.8104 2.8453 0.4502 9 14 6.4371 1.6463 2.8689 10 1 5.7556 0.6417 3.7242 11 1 7.7635 1.1237 2.4532 12 1 6.6189 2.9063 3.6335 13 6 4.2380 1.5728 -1.2611 14 6 4.4932 0.1832 -1.8483 15 7 5.2257 0.3135 -3.1103 16 6 5.5634 -0.7876 -3.8104 17 8 5.2605 -1.8886 -3.3944 18 6 6.3040 -0.6560 -5.0853 19 6 6.6531 -1.7962 -5.8104 20 6 7.3431 -1.6737 -6.9971 21 6 7.6932 -0.4095 -7.4734 22 6 8.4348 -0.2779 -8.7478 23 8 9.0592 0.7373 -8.9855 24 7 8.4223 -1.2863 -9.6420 25 6 8.9830 -1.0854 -10.9805 26 6 7.8480 -2.5832 -9.2755 27 6 7.3489 0.7304 -6.7456 28 6 6.6539 0.6082 -5.5617 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8901 35 1 1.6767 1.9563 -0.8900 36 1 6.6546 3.3076 0.5713 37 1 5.1903 2.0706 -1.0783 38 1 3.6492 2.1619 -1.9642 39 1 3.5409 -0.3145 -2.0312 40 1 5.0821 -0.4059 -1.1452 41 1 5.4684 1.1922 -3.4419 42 1 6.3833 -2.7745 -5.4412 43 1 7.6129 -2.5560 -7.5585 44 1 10.0411 -1.3469 -10.9743 45 1 8.4562 -1.7191 -11.6939 46 1 8.8687 -0.0405 -11.2692 47 1 6.8445 -2.4364 -8.8760 48 1 7.7979 -3.2209 -10.1581 49 1 8.4741 -3.0573 -8.5197 50 1 7.6235 1.7085 -7.1121 51 1 6.3842 1.4905 -5.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267319340.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:22 Heat of formation + Delta-G solvation = -14.592843 kcal Electronic energy + Delta-G solvation = -29927.888788 eV Core-core repulsion = 25828.409215 eV Total energy + Delta-G solvation = -4099.479573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.75184 -40.84018 -38.96813 -38.21434 -36.91355 -35.85063 -34.65167 -33.13209 -32.37344 -32.15424 -29.96913 -28.85820 -27.78232 -27.32980 -25.65519 -24.52388 -23.59570 -22.52374 -22.00495 -21.63424 -21.02661 -19.20716 -18.51275 -18.36208 -17.48145 -17.07917 -17.07625 -16.82430 -16.38941 -16.11499 -15.84159 -15.56627 -15.45978 -15.38630 -14.86145 -14.71808 -14.54196 -14.45490 -14.29034 -14.23285 -13.75858 -13.73490 -13.36564 -13.31806 -13.21274 -13.09528 -12.82694 -12.68200 -12.65991 -12.47413 -12.19736 -11.90884 -11.88901 -11.69424 -11.69014 -11.35434 -11.20441 -10.94795 -10.61478 -10.28697 -10.12863 -9.97221 -9.72857 -8.62379 -7.72108 -5.49577 -0.63849 0.25916 1.32448 1.44865 1.48235 1.56597 1.89100 2.01836 2.11200 2.50233 2.77605 3.27087 3.29870 3.60363 3.70587 3.79779 3.86538 4.14603 4.21466 4.22148 4.27227 4.34779 4.40165 4.42569 4.45423 4.53934 4.61531 4.68509 4.69930 4.75465 4.82506 4.86005 4.91256 4.91517 4.97892 5.06913 5.13280 5.16338 5.23557 5.24745 5.26973 5.38874 5.42219 5.42982 5.60194 5.63390 5.67634 5.96063 6.17624 6.48042 6.57739 6.95394 7.12209 7.19603 7.85945 8.31750 9.13195 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013783 B = 0.002140 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.009728 B =13078.319512 C =14164.642544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.144 3.856 4 N -0.599 5.599 5 C -0.252 4.252 6 H 0.058 0.942 7 C -0.043 4.043 8 N -0.918 5.918 9 Si 0.962 3.038 10 H -0.272 1.272 11 H -0.293 1.293 12 H -0.287 1.287 13 C 0.114 3.886 14 C 0.123 3.877 15 N -0.704 5.704 16 C 0.545 3.455 17 O -0.581 6.581 18 C -0.118 4.118 19 C -0.074 4.074 20 C -0.120 4.120 21 C -0.121 4.121 22 C 0.552 3.448 23 O -0.575 6.575 24 N -0.612 5.612 25 C 0.081 3.919 26 C 0.049 3.951 27 C -0.075 4.075 28 C -0.091 4.091 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.050 0.950 36 H 0.253 0.747 37 H 0.117 0.883 38 H 0.036 0.964 39 H 0.045 0.955 40 H 0.028 0.972 41 H 0.410 0.590 42 H 0.145 0.855 43 H 0.207 0.793 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.057 0.943 47 H 0.087 0.913 48 H 0.111 0.889 49 H 0.088 0.912 50 H 0.142 0.858 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.352 -9.893 -22.633 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.019 3.981 4 N -0.319 5.319 5 C -0.383 4.383 6 H 0.075 0.925 7 C -0.239 4.239 8 N -0.565 5.565 9 Si 0.791 3.209 10 H -0.197 1.197 11 H -0.220 1.220 12 H -0.214 1.214 13 C -0.013 4.013 14 C -0.003 4.003 15 N -0.355 5.355 16 C 0.333 3.667 17 O -0.463 6.463 18 C -0.122 4.122 19 C -0.093 4.093 20 C -0.137 4.137 21 C -0.125 4.125 22 C 0.341 3.659 23 O -0.456 6.456 24 N -0.344 5.344 25 C -0.060 4.060 26 C -0.092 4.092 27 C -0.094 4.094 28 C -0.110 4.110 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.133 0.867 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.247 0.753 42 H 0.163 0.837 43 H 0.223 0.777 44 H 0.080 0.920 45 H 0.125 0.875 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.130 0.870 49 H 0.106 0.894 50 H 0.159 0.841 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.562 -10.017 -22.431 24.616 hybrid contribution 0.736 0.450 1.040 1.351 sum 2.298 -9.566 -21.392 23.546 Atomic orbital electron populations 1.21653 0.94162 1.01799 1.02035 1.22031 0.96509 0.98838 1.00196 1.21074 0.83225 0.94588 0.99243 1.43920 1.00869 1.84700 1.02414 1.19364 1.03507 1.21955 0.93442 0.92462 1.25805 1.01006 0.96657 1.00409 1.69552 1.22615 1.28931 1.35375 0.85277 0.78346 0.77328 0.79967 1.19705 1.21979 1.21369 1.21618 1.02109 0.92026 0.85535 1.21956 0.93827 1.01517 0.83003 1.45934 1.56861 1.09418 1.23334 1.18842 0.79040 0.84086 0.84688 1.90717 1.56873 1.27251 1.71411 1.20208 1.01277 0.95930 0.94746 1.21455 0.95742 0.98442 0.93669 1.23281 0.95658 0.99173 0.95590 1.20138 1.01328 0.95294 0.95710 1.18560 0.80249 0.82946 0.84120 1.90756 1.44507 1.31776 1.78584 1.47752 1.59676 1.12869 1.14103 1.21885 0.99412 1.03044 0.81700 1.22861 0.99309 0.83044 1.03949 1.21262 0.95549 0.99163 0.93408 1.21429 0.96888 0.96714 0.95959 0.92125 0.92291 0.92452 0.93833 0.94269 0.94310 0.93129 0.93688 0.86675 0.94550 0.93720 0.95396 0.75281 0.83678 0.77741 0.92040 0.87506 0.92368 0.89495 0.87047 0.89392 0.84062 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.91 71.98 0.71 -3.08 16 2 C -0.14 -4.89 6.22 30.59 0.19 -4.70 16 3 C 0.14 5.86 5.72 86.38 0.49 6.35 16 4 N -0.60 -29.03 2.49 -702.00 -1.75 -30.77 16 5 C -0.25 -13.52 9.57 84.03 0.80 -12.72 16 6 H 0.06 3.09 7.84 -2.91 -0.02 3.07 16 7 C -0.04 -2.34 5.29 84.86 0.45 -1.90 16 8 N -0.92 -50.66 10.48 21.65 0.23 -50.44 16 9 Si 0.96 44.43 29.56 68.60 2.03 46.46 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 12 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 13 C 0.11 5.15 5.46 86.38 0.47 5.62 16 14 C 0.12 5.21 6.00 86.38 0.52 5.72 16 15 N -0.70 -24.55 5.51 -465.80 -2.56 -27.11 16 16 C 0.55 18.98 7.78 86.84 0.68 19.65 16 17 O -0.58 -24.33 16.34 -3.81 -0.06 -24.39 16 18 C -0.12 -3.15 5.88 -20.04 -0.12 -3.27 16 19 C -0.07 -1.62 9.58 22.49 0.22 -1.40 16 20 C -0.12 -1.95 7.90 22.49 0.18 -1.77 16 21 C -0.12 -2.48 5.78 -20.04 -0.12 -2.59 16 22 C 0.55 11.88 7.54 86.84 0.65 12.53 16 23 O -0.58 -16.93 16.21 -3.79 -0.06 -16.99 16 24 N -0.61 -8.19 3.27 -907.37 -2.97 -11.16 16 25 C 0.08 0.81 10.37 127.77 1.32 2.14 16 26 C 0.05 0.24 8.59 127.77 1.10 1.34 16 27 C -0.07 -1.66 9.57 22.49 0.22 -1.45 16 28 C -0.09 -2.10 9.53 22.49 0.21 -1.89 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.63 6.69 -2.39 -0.02 1.62 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.04 1.60 8.09 -2.38 -0.02 1.58 16 35 H 0.05 1.89 7.83 -2.39 -0.02 1.87 16 36 H 0.25 13.53 8.31 -92.71 -0.77 12.76 16 37 H 0.12 5.90 4.69 -2.40 -0.01 5.89 16 38 H 0.04 1.51 7.86 -2.39 -0.02 1.49 16 39 H 0.04 1.91 6.69 -2.39 -0.02 1.89 16 40 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.41 12.07 6.50 -92.70 -0.60 11.47 16 42 H 0.15 3.07 7.64 -2.91 -0.02 3.05 16 43 H 0.21 1.69 2.99 -14.48 -0.04 1.64 16 44 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.11 0.33 7.86 -2.39 -0.02 0.31 16 46 H 0.06 0.82 7.57 -2.39 -0.02 0.80 16 47 H 0.09 0.43 6.00 -2.39 -0.01 0.41 16 48 H 0.11 -0.08 7.76 -2.39 -0.02 -0.10 16 49 H 0.09 0.25 6.57 -2.39 -0.02 0.24 16 50 H 0.14 3.05 7.78 -2.91 -0.02 3.02 16 51 H 0.15 2.94 6.39 -2.91 -0.02 2.93 16 Total: -1.00 -74.09 409.75 3.15 -70.94 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.32 Total: 24.88 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 7.98 Total: 18.59 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -7.06 Total: -119.48 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -0.12 Total: -41.38 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -74.09 3.15 -70.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267319340.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.346 kcal (2) G-P(sol) polarization free energy of solvation -74.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds