Wall clock time and date at job start Wed Apr 1 2020 05:19:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53005 * 109.47118 * 2 1
4 4 N 1.46499 * 109.47153 * 179.97438 * 3 2 1
5 5 C 1.34778 * 119.99985 * 90.00329 * 4 3 2
6 6 O 1.21280 * 120.00163 * 180.02562 * 5 4 3
7 7 C 1.50706 * 119.99936 * 359.97438 * 5 4 3
8 8 C 1.50696 * 109.46942 * 180.02562 * 7 5 4
9 9 N 1.31849 * 119.65597 * 269.97816 * 8 7 5
10 10 C 1.31851 * 121.77771 * 180.02562 * 9 8 7
11 11 C 1.38255 * 120.88683 * 359.97438 * 10 9 8
12 12 C 1.38533 * 119.22204 * 359.78690 * 11 10 9
13 13 C 1.38708 * 119.66078 * 90.00527 * 8 7 5
14 14 O 1.35915 * 120.46847 * 359.97438 * 13 8 7
15 15 C 1.42901 * 116.99609 * 180.02562 * 14 13 8
16 16 C 1.46500 * 120.00175 * 269.99869 * 4 3 2
17 17 H 1.08998 * 110.64194 * 1.69568 * 16 4 3
18 18 C 1.55159 * 110.71825 * 125.02668 * 16 4 3
19 19 C 1.54903 * 101.58023 * 153.86945 * 18 16 4
20 20 N 1.47427 * 104.83348 * 322.98669 * 19 18 16
21 21 C 1.36939 * 125.64964 * 204.10025 * 20 19 18
22 22 H 1.07998 * 119.99929 * 180.02562 * 21 20 19
23 23 C 1.38805 * 119.99856 * 0.03412 * 21 20 19
24 24 N 1.31620 * 120.00470 * 0.02562 * 23 21 20
25 25 Si 1.86803 * 119.99821 * 180.02562 * 23 21 20
26 26 H 1.48498 * 109.47261 * 0.02562 * 25 23 21
27 27 H 1.48503 * 109.46825 * 120.00205 * 25 23 21
28 28 H 1.48501 * 109.47321 * 240.00195 * 25 23 21
29 29 C 1.47020 * 108.70148 * 24.12923 * 20 19 18
30 30 H 1.09000 * 109.47000 * 59.99918 * 1 2 3
31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3
32 32 H 1.08996 * 109.47395 * 299.99975 * 1 2 3
33 33 H 1.09006 * 109.47537 * 239.99973 * 2 1 3
34 34 H 1.09002 * 109.47564 * 119.99578 * 2 1 3
35 35 H 1.08999 * 109.47054 * 60.00289 * 3 2 1
36 36 H 1.09000 * 109.47252 * 299.99928 * 3 2 1
37 37 H 1.08997 * 109.46590 * 60.00393 * 7 5 4
38 38 H 1.08995 * 109.47161 * 300.00260 * 7 5 4
39 39 H 1.07997 * 119.55188 * 180.02562 * 10 9 8
40 40 H 1.07996 * 120.38906 * 180.02562 * 11 10 9
41 41 H 1.07996 * 120.81553 * 180.23466 * 12 11 10
42 42 H 1.08996 * 109.46732 * 180.02562 * 15 14 13
43 43 H 1.08999 * 109.47144 * 300.00202 * 15 14 13
44 44 H 1.08998 * 109.47043 * 59.99801 * 15 14 13
45 45 H 1.09010 * 111.00053 * 271.93933 * 18 16 4
46 46 H 1.09000 * 111.00578 * 35.78934 * 18 16 4
47 47 H 1.09003 * 110.36673 * 204.15380 * 19 18 16
48 48 H 1.08996 * 110.37393 * 81.83100 * 19 18 16
49 49 H 0.97004 * 120.00054 * 180.02562 * 24 23 21
50 50 H 1.08996 * 109.88536 * 239.52178 * 29 20 19
51 51 H 1.09003 * 109.88341 * 118.35472 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4426 0.0006
5 6 4.1794 1.4425 -1.1663
6 8 5.3922 1.4420 -1.1658
7 6 3.4264 1.4417 -2.4718
8 6 4.4061 1.4411 -3.6168
9 7 4.8299 2.5866 -4.1133
10 6 5.6862 2.6349 -5.1148
11 6 6.1762 1.4752 -5.6861
12 6 5.7607 0.2497 -5.1915
13 6 4.8523 0.2355 -4.1377
14 8 4.4126 -0.9428 -3.6225
15 6 4.9207 -2.1398 -4.2150
16 6 4.2370 1.4428 1.2696
17 1 3.5458 1.4127 2.1119
18 6 5.2328 0.2544 1.3291
19 6 6.3035 0.7947 2.3095
20 7 6.4163 2.2299 1.9917
21 6 7.5080 3.0187 2.2390
22 1 7.4916 4.0639 1.9676
23 6 8.6358 2.4748 2.8381
24 7 8.6561 1.2008 3.1682
25 14 10.1248 3.5510 3.1761
26 1 9.8500 4.9354 2.7145
27 1 10.4065 3.5625 4.6341
28 1 11.3014 3.0107 2.4488
29 6 5.1622 2.6741 1.3661
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5138 0.8899
33 1 1.8934 -0.5138 -0.8900
34 1 1.8934 -0.5138 0.8900
35 1 1.6767 1.9563 0.8900
36 1 1.6767 1.9564 -0.8900
37 1 2.7995 2.3315 -2.5300
38 1 2.8001 0.5516 -2.5295
39 1 6.0097 3.5933 -5.4933
40 1 6.8776 1.5241 -6.5059
41 1 6.1300 -0.6721 -5.6160
42 1 4.4902 -3.0054 -3.7117
43 1 4.6534 -2.1640 -5.2715
44 1 6.0058 -2.1628 -4.1142
45 1 4.7520 -0.6385 1.7290
46 1 5.6651 0.0574 0.3481
47 1 7.2571 0.2934 2.1436
48 1 5.9770 0.6589 3.3405
49 1 9.4441 0.8209 3.5873
50 1 5.3637 3.0655 0.3689
51 1 4.6934 3.4428 1.9805
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001267482787.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:19:38
Heat of formation + Delta-G solvation = 0.750646 kcal
Electronic energy + Delta-G solvation = -32218.717301 eV
Core-core repulsion = 28119.903071 eV
Total energy + Delta-G solvation = -4098.814230 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-40.91352 -39.74454 -38.19299 -36.66025 -35.81612 -33.24206 -32.82707 -31.74390
-31.36931 -29.18443 -28.37378 -27.58677 -27.01525 -25.74773 -24.32041 -22.95689
-22.72323 -21.76422 -20.69293 -19.97654 -18.46181 -18.13497 -17.22538 -16.92222
-16.70030 -16.41162 -15.89153 -15.53753 -14.87076 -14.70028 -14.49727 -14.43465
-14.11941 -13.97799 -13.76197 -13.55681 -13.31504 -13.07198 -12.86957 -12.41737
-12.35664 -12.21468 -12.14041 -11.87821 -11.59373 -11.58579 -11.45888 -11.41481
-11.23158 -10.86330 -10.77220 -10.72340 -10.58574 -10.34331 -9.95781 -9.81708
-9.65982 -9.60119 -9.39964 -8.94418 -8.48638 -8.36667 -8.14378 -6.61989
-5.47939 -2.87530 1.05136 1.23334 3.04147 3.09713 3.24463 3.50224
3.55227 3.58252 3.78148 4.24827 4.51619 4.61216 4.64701 4.75978
4.84118 4.86071 4.94657 4.97143 5.02095 5.16336 5.21491 5.28829
5.30334 5.35569 5.42027 5.55399 5.57413 5.60363 5.67562 5.72914
5.77391 5.90321 5.92193 5.93117 5.97457 6.01955 6.05433 6.21925
6.36488 6.45218 6.69286 6.75688 6.78768 6.92740 7.07939 7.36673
7.67153 7.81189 7.82845 7.98068 8.03774 8.54498 8.68258 9.39873
10.01293 10.66958 11.56196
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008721 B = 0.003904 C = 0.003114
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3209.828146 B = 7170.334255 C = 8988.792187
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.145 4.145
3 C 0.108 3.892
4 N -0.607 5.607
5 C 0.517 3.483
6 O -0.500 6.500
7 C -0.085 4.085
8 C 0.130 3.870
9 N -0.438 5.438
10 C 0.064 3.936
11 C -0.136 4.136
12 C -0.165 4.165
13 C 0.092 3.908
14 O -0.306 6.306
15 C 0.026 3.974
16 C 0.137 3.863
17 H 0.086 0.914
18 C -0.154 4.154
19 C 0.158 3.842
20 N -0.596 5.596
21 C -0.209 4.209
22 H 0.075 0.925
23 C -0.015 4.015
24 N -0.925 5.925
25 Si 0.912 3.088
26 H -0.281 1.281
27 H -0.292 1.292
28 H -0.292 1.292
29 C 0.133 3.867
30 H 0.054 0.946
31 H 0.054 0.946
32 H 0.055 0.945
33 H 0.065 0.935
34 H 0.068 0.932
35 H 0.078 0.922
36 H 0.075 0.925
37 H 0.107 0.893
38 H 0.108 0.892
39 H 0.158 0.842
40 H 0.136 0.864
41 H 0.138 0.862
42 H 0.102 0.898
43 H 0.054 0.946
44 H 0.057 0.943
45 H 0.050 0.950
46 H 0.082 0.918
47 H 0.105 0.895
48 H 0.008 0.992
49 H 0.249 0.751
50 H 0.037 0.963
51 H 0.015 0.985
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.559 -6.209 -17.217 24.682
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.183 4.183
3 C -0.015 4.015
4 N -0.341 5.341
5 C 0.303 3.697
6 O -0.373 6.373
7 C -0.126 4.126
8 C -0.010 4.010
9 N -0.147 5.147
10 C -0.093 4.093
11 C -0.156 4.156
12 C -0.191 4.191
13 C 0.044 3.956
14 O -0.217 6.217
15 C -0.069 4.069
16 C 0.034 3.966
17 H 0.104 0.896
18 C -0.194 4.194
19 C 0.033 3.967
20 N -0.322 5.322
21 C -0.338 4.338
22 H 0.093 0.907
23 C -0.210 4.210
24 N -0.574 5.574
25 Si 0.743 3.257
26 H -0.206 1.206
27 H -0.219 1.219
28 H -0.219 1.219
29 C 0.006 3.994
30 H 0.073 0.927
31 H 0.074 0.926
32 H 0.074 0.926
33 H 0.084 0.916
34 H 0.087 0.913
35 H 0.097 0.903
36 H 0.094 0.906
37 H 0.125 0.875
38 H 0.126 0.874
39 H 0.175 0.825
40 H 0.154 0.846
41 H 0.156 0.844
42 H 0.120 0.880
43 H 0.072 0.928
44 H 0.076 0.924
45 H 0.068 0.932
46 H 0.100 0.900
47 H 0.123 0.877
48 H 0.026 0.974
49 H 0.059 0.941
50 H 0.055 0.945
51 H 0.032 0.968
Dipole moment (debyes) X Y Z Total
from point charges -16.117 -5.464 -16.615 23.784
hybrid contribution 1.236 -0.417 -0.346 1.349
sum -14.882 -5.881 -16.961 23.318
Atomic orbital electron populations
1.21704 0.95370 1.01780 1.01827 1.22005 0.95752 0.97505 1.03080
1.21654 0.80101 0.96687 1.03080 1.47946 1.05866 1.74270 1.06007
1.20129 0.88146 0.77028 0.84376 1.90818 1.13318 1.46482 1.86730
1.20534 0.96927 1.05102 0.90000 1.19958 0.98421 0.85827 0.96804
1.67450 1.10610 1.27153 1.09458 1.22579 0.94911 0.98584 0.93177
1.21947 1.00140 0.92588 1.00885 1.21625 0.99605 0.99768 0.98143
1.19816 0.94943 0.87027 0.93776 1.86100 1.65676 1.12155 1.57817
1.23096 1.00018 0.85309 0.98485 1.22154 0.93168 0.98001 0.83254
0.89593 1.23417 0.97724 0.95325 1.02911 1.21823 0.97848 0.84713
0.92293 1.44296 1.11164 1.06584 1.70108 1.19117 0.90921 0.91952
1.31802 0.90695 1.24737 0.98192 0.96351 1.01681 1.69820 1.28557
1.10963 1.48099 0.86018 0.83008 0.79303 0.77368 1.20618 1.21916
1.21910 1.21488 0.87663 0.93451 0.96789 0.92677 0.92647 0.92583
0.91624 0.91330 0.90342 0.90621 0.87536 0.87434 0.82508 0.84618
0.84442 0.87955 0.92790 0.92412 0.93175 0.89963 0.87716 0.97419
0.94057 0.94529 0.96757
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16
2 C -0.14 -1.38 6.26 -26.73 -0.17 -1.55 16
3 C 0.11 1.17 5.19 -4.04 -0.02 1.15 16
4 N -0.61 -9.59 2.54 -164.02 -0.42 -10.01 16
5 C 0.52 9.13 6.77 -10.98 -0.07 9.06 16
6 O -0.50 -11.50 12.38 5.56 0.07 -11.43 16
7 C -0.09 -1.16 4.33 -29.03 -0.13 -1.29 16
8 C 0.13 1.98 5.29 -82.41 -0.44 1.55 16
9 N -0.44 -6.83 10.27 -9.35 -0.10 -6.93 16
10 C 0.06 0.82 11.18 -17.54 -0.20 0.63 16
11 C -0.14 -1.49 10.11 -39.47 -0.40 -1.89 16
12 C -0.16 -1.92 9.14 -39.14 -0.36 -2.27 16
13 C 0.09 1.28 6.67 -39.07 -0.26 1.02 16
14 O -0.31 -3.87 9.55 -19.47 -0.19 -4.06 16
15 C 0.03 0.22 9.83 101.05 0.99 1.21 16
16 C 0.14 2.63 3.44 -66.09 -0.23 2.41 16
17 H 0.09 1.47 7.88 -51.93 -0.41 1.06 16
18 C -0.15 -3.34 6.39 -24.58 -0.16 -3.50 16
19 C 0.16 4.22 5.89 -2.53 -0.01 4.20 16
20 N -0.60 -16.83 3.39 -170.08 -0.58 -17.41 16
21 C -0.21 -6.36 10.27 -15.06 -0.15 -6.52 16
22 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16
23 C -0.02 -0.45 5.49 -17.43 -0.10 -0.55 16
24 N -0.92 -28.73 10.09 55.49 0.56 -28.17 16
25 Si 0.91 23.61 29.55 -169.99 -5.02 18.58 16
26 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16
27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16
28 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16
29 C 0.13 3.16 6.49 -3.06 -0.02 3.14 16
30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16
32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16
33 H 0.07 0.65 7.22 -51.93 -0.37 0.28 16
34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16
35 H 0.08 0.78 7.96 -51.93 -0.41 0.37 16
36 H 0.08 0.68 6.44 -51.93 -0.33 0.34 16
37 H 0.11 1.25 7.40 -51.93 -0.38 0.87 16
38 H 0.11 1.23 6.56 -51.93 -0.34 0.89 16
39 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16
40 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16
41 H 0.14 1.19 6.45 -52.49 -0.34 0.85 16
42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16
43 H 0.05 0.34 7.71 -51.93 -0.40 -0.06 16
44 H 0.06 0.49 7.69 -51.93 -0.40 0.09 16
45 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16
46 H 0.08 1.97 5.81 -51.93 -0.30 1.67 16
47 H 0.11 3.15 5.87 -51.93 -0.30 2.85 16
48 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16
49 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16
50 H 0.04 0.95 6.28 -51.93 -0.33 0.62 16
51 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16
LS Contribution 402.42 15.07 6.06 6.06
Total: -1.00 -38.04 402.42 -9.05 -47.09
By element:
Atomic # 1 Polarization: 8.29 SS G_CDS: -8.10 Total: 0.18 kcal
Atomic # 6 Polarization: 7.43 SS G_CDS: -1.35 Total: 6.08 kcal
Atomic # 7 Polarization: -61.99 SS G_CDS: -0.53 Total: -62.52 kcal
Atomic # 8 Polarization: -15.37 SS G_CDS: -0.12 Total: -15.49 kcal
Atomic # 14 Polarization: 23.61 SS G_CDS: -5.02 Total: 18.58 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -38.04 -9.05 -47.09 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267482787.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.841 kcal
(2) G-P(sol) polarization free energy of solvation -38.036 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.804 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.090 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.751 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds