Wall clock time and date at job start Wed Apr 1 2020 05:19:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53005 * 109.47118 * 2 1
4 4 N 1.46499 * 109.47153 * 179.97438 * 3 2 1
5 5 C 1.34778 * 119.99985 * 90.00329 * 4 3 2
6 6 O 1.21280 * 120.00163 * 180.02562 * 5 4 3
7 7 C 1.50706 * 119.99936 * 359.97438 * 5 4 3
8 8 C 1.50696 * 109.46942 * 180.02562 * 7 5 4
9 9 N 1.31849 * 119.65597 * 269.97816 * 8 7 5
10 10 C 1.31851 * 121.77771 * 180.02562 * 9 8 7
11 11 C 1.38255 * 120.88683 * 359.97438 * 10 9 8
12 12 C 1.38533 * 119.22204 * 359.78690 * 11 10 9
13 13 C 1.38708 * 119.66078 * 90.00527 * 8 7 5
14 14 O 1.35915 * 120.46847 * 359.97438 * 13 8 7
15 15 C 1.42901 * 116.99609 * 180.02562 * 14 13 8
16 16 C 1.46500 * 120.00175 * 269.99869 * 4 3 2
17 17 H 1.08998 * 110.64194 * 1.69568 * 16 4 3
18 18 C 1.55159 * 110.71825 * 125.02668 * 16 4 3
19 19 C 1.54903 * 101.58023 * 153.86945 * 18 16 4
20 20 N 1.47427 * 104.83348 * 322.98669 * 19 18 16
21 21 C 1.36939 * 125.64964 * 204.10025 * 20 19 18
22 22 H 1.07998 * 119.99929 * 180.02562 * 21 20 19
23 23 C 1.38805 * 119.99856 * 0.03412 * 21 20 19
24 24 N 1.31620 * 120.00470 * 0.02562 * 23 21 20
25 25 Si 1.86803 * 119.99821 * 180.02562 * 23 21 20
26 26 H 1.48498 * 109.47261 * 0.02562 * 25 23 21
27 27 H 1.48503 * 109.46825 * 120.00205 * 25 23 21
28 28 H 1.48501 * 109.47321 * 240.00195 * 25 23 21
29 29 C 1.47020 * 108.70148 * 24.12923 * 20 19 18
30 30 H 1.09000 * 109.47000 * 59.99918 * 1 2 3
31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3
32 32 H 1.08996 * 109.47395 * 299.99975 * 1 2 3
33 33 H 1.09006 * 109.47537 * 239.99973 * 2 1 3
34 34 H 1.09002 * 109.47564 * 119.99578 * 2 1 3
35 35 H 1.08999 * 109.47054 * 60.00289 * 3 2 1
36 36 H 1.09000 * 109.47252 * 299.99928 * 3 2 1
37 37 H 1.08997 * 109.46590 * 60.00393 * 7 5 4
38 38 H 1.08995 * 109.47161 * 300.00260 * 7 5 4
39 39 H 1.07997 * 119.55188 * 180.02562 * 10 9 8
40 40 H 1.07996 * 120.38906 * 180.02562 * 11 10 9
41 41 H 1.07996 * 120.81553 * 180.23466 * 12 11 10
42 42 H 1.08996 * 109.46732 * 180.02562 * 15 14 13
43 43 H 1.08999 * 109.47144 * 300.00202 * 15 14 13
44 44 H 1.08998 * 109.47043 * 59.99801 * 15 14 13
45 45 H 1.09010 * 111.00053 * 271.93933 * 18 16 4
46 46 H 1.09000 * 111.00578 * 35.78934 * 18 16 4
47 47 H 1.09003 * 110.36673 * 204.15380 * 19 18 16
48 48 H 1.08996 * 110.37393 * 81.83100 * 19 18 16
49 49 H 0.97004 * 120.00054 * 180.02562 * 24 23 21
50 50 H 1.08996 * 109.88536 * 239.52178 * 29 20 19
51 51 H 1.09003 * 109.88341 * 118.35472 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4426 0.0006
5 6 4.1794 1.4425 -1.1663
6 8 5.3922 1.4420 -1.1658
7 6 3.4264 1.4417 -2.4718
8 6 4.4061 1.4411 -3.6168
9 7 4.8299 2.5866 -4.1133
10 6 5.6862 2.6349 -5.1148
11 6 6.1762 1.4752 -5.6861
12 6 5.7607 0.2497 -5.1915
13 6 4.8523 0.2355 -4.1377
14 8 4.4126 -0.9428 -3.6225
15 6 4.9207 -2.1398 -4.2150
16 6 4.2370 1.4428 1.2696
17 1 3.5458 1.4127 2.1119
18 6 5.2328 0.2544 1.3291
19 6 6.3035 0.7947 2.3095
20 7 6.4163 2.2299 1.9917
21 6 7.5080 3.0187 2.2390
22 1 7.4916 4.0639 1.9676
23 6 8.6358 2.4748 2.8381
24 7 8.6561 1.2008 3.1682
25 14 10.1248 3.5510 3.1761
26 1 9.8500 4.9354 2.7145
27 1 10.4065 3.5625 4.6341
28 1 11.3014 3.0107 2.4488
29 6 5.1622 2.6741 1.3661
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5138 0.8899
33 1 1.8934 -0.5138 -0.8900
34 1 1.8934 -0.5138 0.8900
35 1 1.6767 1.9563 0.8900
36 1 1.6767 1.9564 -0.8900
37 1 2.7995 2.3315 -2.5300
38 1 2.8001 0.5516 -2.5295
39 1 6.0097 3.5933 -5.4933
40 1 6.8776 1.5241 -6.5059
41 1 6.1300 -0.6721 -5.6160
42 1 4.4902 -3.0054 -3.7117
43 1 4.6534 -2.1640 -5.2715
44 1 6.0058 -2.1628 -4.1142
45 1 4.7520 -0.6385 1.7290
46 1 5.6651 0.0574 0.3481
47 1 7.2571 0.2934 2.1436
48 1 5.9770 0.6589 3.3405
49 1 9.4441 0.8209 3.5873
50 1 5.3637 3.0655 0.3689
51 1 4.6934 3.4428 1.9805
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001267482787.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:19:36
Heat of formation + Delta-G solvation = -24.749864 kcal
Electronic energy + Delta-G solvation = -32219.823086 eV
Core-core repulsion = 28119.903071 eV
Total energy + Delta-G solvation = -4099.920015 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.51 seconds
Orbital eigenvalues (eV)
-41.92851 -41.05559 -39.09211 -38.45498 -37.04508 -34.73371 -33.98878 -33.20940
-32.41867 -31.07853 -29.72440 -28.59620 -28.27398 -26.90522 -26.25909 -23.87837
-23.84985 -22.65801 -22.18792 -21.96374 -19.78541 -19.04399 -18.95626 -18.16135
-18.03066 -17.57404 -16.92511 -16.73036 -16.56608 -16.07717 -15.87087 -15.55947
-15.33220 -15.26788 -14.83103 -14.78441 -14.38296 -14.28011 -14.12781 -13.90661
-13.73563 -13.44081 -13.32045 -13.04850 -12.98280 -12.92017 -12.75063 -12.62385
-12.39706 -12.34592 -12.29816 -12.17457 -12.00751 -11.96315 -11.83665 -11.56958
-11.33183 -10.78591 -10.75188 -10.56567 -10.40313 -9.53411 -9.31952 -8.86798
-7.77816 -5.21442 0.10834 0.30166 1.40887 1.43949 1.54099 1.76800
2.00299 2.24580 2.48680 2.80030 3.30482 3.31245 3.62725 3.67340
3.75410 3.81793 3.92348 4.04377 4.07481 4.12026 4.22290 4.25747
4.29153 4.33693 4.35262 4.44768 4.45783 4.53115 4.64725 4.68436
4.70313 4.75319 4.77093 4.83096 4.99853 5.01307 5.03443 5.04589
5.09967 5.11766 5.31766 5.34414 5.41265 5.49909 5.55903 5.64494
5.78078 5.83188 6.22467 6.29745 6.54872 7.01632 7.10010 7.36495
7.77691 8.42218 9.24274
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008721 B = 0.003904 C = 0.003114
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3209.828146 B = 7170.334255 C = 8988.792187
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.139 4.139
3 C 0.101 3.899
4 N -0.601 5.601
5 C 0.512 3.488
6 O -0.562 6.562
7 C -0.072 4.072
8 C 0.096 3.904
9 N -0.471 5.471
10 C 0.044 3.956
11 C -0.129 4.129
12 C -0.170 4.170
13 C 0.078 3.922
14 O -0.323 6.323
15 C 0.017 3.983
16 C 0.155 3.845
17 H 0.117 0.883
18 C -0.137 4.137
19 C 0.163 3.837
20 N -0.618 5.618
21 C -0.236 4.236
22 H 0.071 0.929
23 C -0.068 4.068
24 N -0.949 5.949
25 Si 0.982 3.018
26 H -0.270 1.270
27 H -0.284 1.284
28 H -0.292 1.292
29 C 0.132 3.868
30 H 0.067 0.933
31 H 0.059 0.941
32 H 0.061 0.939
33 H 0.060 0.940
34 H 0.056 0.944
35 H 0.094 0.906
36 H 0.100 0.900
37 H 0.124 0.876
38 H 0.130 0.870
39 H 0.178 0.822
40 H 0.172 0.828
41 H 0.167 0.833
42 H 0.120 0.880
43 H 0.078 0.922
44 H 0.053 0.947
45 H 0.081 0.919
46 H 0.057 0.943
47 H 0.064 0.936
48 H -0.004 1.004
49 H 0.247 0.753
50 H 0.011 0.989
51 H 0.022 0.978
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.349 -6.516 -18.483 26.848
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.177 4.177
3 C -0.020 4.020
4 N -0.334 5.334
5 C 0.301 3.699
6 O -0.440 6.440
7 C -0.112 4.112
8 C -0.043 4.043
9 N -0.180 5.180
10 C -0.113 4.113
11 C -0.149 4.149
12 C -0.197 4.197
13 C 0.030 3.970
14 O -0.235 6.235
15 C -0.077 4.077
16 C 0.051 3.949
17 H 0.135 0.865
18 C -0.176 4.176
19 C 0.037 3.963
20 N -0.344 5.344
21 C -0.365 4.365
22 H 0.089 0.911
23 C -0.260 4.260
24 N -0.600 5.600
25 Si 0.809 3.191
26 H -0.194 1.194
27 H -0.210 1.210
28 H -0.219 1.219
29 C 0.006 3.994
30 H 0.086 0.914
31 H 0.078 0.922
32 H 0.080 0.920
33 H 0.079 0.921
34 H 0.075 0.925
35 H 0.112 0.888
36 H 0.118 0.882
37 H 0.142 0.858
38 H 0.148 0.852
39 H 0.195 0.805
40 H 0.190 0.810
41 H 0.184 0.816
42 H 0.138 0.862
43 H 0.096 0.904
44 H 0.072 0.928
45 H 0.099 0.901
46 H 0.076 0.924
47 H 0.082 0.918
48 H 0.014 0.986
49 H 0.056 0.944
50 H 0.029 0.971
51 H 0.040 0.960
Dipole moment (debyes) X Y Z Total
from point charges -17.992 -5.778 -17.888 26.021
hybrid contribution 1.816 -0.351 -0.015 1.850
sum -16.175 -6.129 -17.903 24.895
Atomic orbital electron populations
1.21665 0.93290 1.02421 1.02762 1.21929 0.97397 0.96107 1.02301
1.22048 0.76640 0.98247 1.05087 1.47992 1.07861 1.73255 1.04252
1.20874 0.87670 0.75471 0.85902 1.90791 1.16186 1.49343 1.87689
1.20496 0.96556 1.06869 0.87292 1.20191 0.99818 0.86511 0.97822
1.67402 1.11959 1.27947 1.10741 1.23092 0.94787 1.00410 0.92990
1.22363 0.99675 0.91721 1.01094 1.22056 0.98821 1.01303 0.97470
1.19991 0.95420 0.87193 0.94377 1.86058 1.66076 1.12782 1.58616
1.23385 0.99928 0.84272 1.00140 1.21876 0.92871 0.94109 0.86077
0.86477 1.23147 0.97007 0.97338 1.00157 1.21578 0.97557 0.84221
0.92903 1.44586 1.12254 1.07202 1.70320 1.19440 0.92410 0.92331
1.32369 0.91068 1.25635 1.00976 0.97836 1.01576 1.70084 1.29083
1.12448 1.48339 0.84963 0.78834 0.77965 0.77300 1.19437 1.21038
1.21867 1.21597 0.87128 0.95756 0.94940 0.91413 0.92202 0.92004
0.92086 0.92535 0.88801 0.88231 0.85780 0.85192 0.80500 0.81012
0.81606 0.86219 0.90381 0.92825 0.90091 0.92450 0.91779 0.98591
0.94357 0.97060 0.95985
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.61 9.91 71.98 0.71 -0.89 16
2 C -0.14 -2.27 6.26 30.59 0.19 -2.08 16
3 C 0.10 1.91 5.19 86.38 0.45 2.36 16
4 N -0.60 -18.36 2.54 -791.23 -2.01 -20.36 16
5 C 0.51 18.18 6.77 87.66 0.59 18.78 16
6 O -0.56 -26.94 12.38 -3.03 -0.04 -26.98 16
7 C -0.07 -1.92 4.33 29.10 0.13 -1.80 16
8 C 0.10 2.93 5.29 42.67 0.23 3.16 16
9 N -0.47 -14.86 10.27 -183.50 -1.88 -16.75 16
10 C 0.04 1.11 11.18 84.69 0.95 2.06 16
11 C -0.13 -2.64 10.11 22.34 0.23 -2.41 16
12 C -0.17 -3.72 9.14 22.56 0.21 -3.52 16
13 C 0.08 2.13 6.67 22.60 0.15 2.28 16
14 O -0.32 -7.94 9.55 -92.59 -0.88 -8.82 16
15 C 0.02 0.26 9.83 113.37 1.11 1.38 16
16 C 0.16 5.86 3.44 46.18 0.16 6.01 16
17 H 0.12 3.73 7.88 -2.39 -0.02 3.71 16
18 C -0.14 -6.02 6.39 31.98 0.20 -5.82 16
19 C 0.16 9.00 5.89 86.85 0.51 9.51 16
20 N -0.62 -36.19 3.39 -692.01 -2.35 -38.54 16
21 C -0.24 -14.87 10.27 84.03 0.86 -14.01 16
22 H 0.07 4.39 7.83 -2.91 -0.02 4.36 16
23 C -0.07 -4.22 5.49 84.86 0.47 -3.76 16
24 N -0.95 -61.01 10.09 21.65 0.22 -60.79 16
25 Si 0.98 49.56 29.55 68.60 2.03 51.59 16
26 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16
27 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16
28 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16
29 C 0.13 6.42 6.49 86.73 0.56 6.98 16
30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16
31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16
32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16
33 H 0.06 1.06 7.22 -2.38 -0.02 1.05 16
34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
35 H 0.09 1.54 7.96 -2.39 -0.02 1.52 16
36 H 0.10 1.45 6.44 -2.39 -0.02 1.44 16
37 H 0.12 2.76 7.40 -2.39 -0.02 2.74 16
38 H 0.13 2.77 6.56 -2.39 -0.02 2.75 16
39 H 0.18 3.39 8.06 -2.91 -0.02 3.37 16
40 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16
41 H 0.17 2.48 6.45 -2.91 -0.02 2.46 16
42 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16
43 H 0.08 0.80 7.71 -2.39 -0.02 0.78 16
44 H 0.05 0.85 7.69 -2.39 -0.02 0.83 16
45 H 0.08 3.01 8.14 -2.38 -0.02 2.99 16
46 H 0.06 2.85 5.81 -2.39 -0.01 2.83 16
47 H 0.06 4.07 5.87 -2.39 -0.01 4.06 16
48 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16
49 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16
50 H 0.01 0.61 6.28 -2.39 -0.02 0.60 16
51 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16
Total: -1.00 -88.52 402.42 3.71 -84.81
By element:
Atomic # 1 Polarization: 16.68 SS G_CDS: 0.92 Total: 17.61 kcal
Atomic # 6 Polarization: 10.53 SS G_CDS: 7.71 Total: 18.24 kcal
Atomic # 7 Polarization: -130.42 SS G_CDS: -6.02 Total: -136.44 kcal
Atomic # 8 Polarization: -34.88 SS G_CDS: -0.92 Total: -35.80 kcal
Atomic # 14 Polarization: 49.56 SS G_CDS: 2.03 Total: 51.59 kcal
Total: -88.52 3.71 -84.81 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267482787.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.061 kcal
(2) G-P(sol) polarization free energy of solvation -88.524 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.464 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.811 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.750 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.52 seconds