Wall clock time and date at job start Wed Apr 1 2020 05:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46936 * 2 1 4 4 N 1.46497 * 109.47211 * 180.02562 * 3 2 1 5 5 C 1.34782 * 120.00022 * 82.09750 * 4 3 2 6 6 O 1.21556 * 119.99815 * 183.45711 * 5 4 3 7 7 C 1.47831 * 120.00060 * 3.46128 * 5 4 3 8 8 N 1.32863 * 119.77952 * 354.12484 * 7 5 4 9 9 C 1.31375 * 121.69327 * 180.02562 * 8 7 5 10 10 C 1.38767 * 121.06993 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.28243 * 180.02562 * 10 9 8 12 12 C 1.38311 * 119.44168 * 0.02562 * 10 9 8 13 13 C 1.39340 * 118.43898 * 359.72077 * 12 10 9 14 14 O 1.35655 * 120.54226 * 180.26502 * 13 12 10 15 15 C 1.42901 * 116.99689 * 0.27750 * 14 13 12 16 16 C 1.46496 * 120.00090 * 262.10264 * 4 3 2 17 17 H 1.08998 * 110.88896 * 356.11947 * 16 4 3 18 18 C 1.55163 * 111.00661 * 119.99847 * 16 4 3 19 19 C 1.54320 * 102.93962 * 153.57790 * 18 16 4 20 20 N 1.47016 * 107.27487 * 337.80397 * 19 18 16 21 21 C 1.36937 * 125.64949 * 178.96097 * 20 19 18 22 22 H 1.08003 * 120.00328 * 179.97438 * 21 20 19 23 23 C 1.38812 * 120.00040 * 359.97438 * 21 20 19 24 24 N 1.31615 * 119.99857 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00025 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47258 * 60.00222 * 25 23 21 27 27 H 1.48498 * 109.47204 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47176 * 299.99997 * 25 23 21 29 29 C 1.47425 * 108.70536 * 358.94699 * 20 19 18 30 30 H 1.09000 * 109.47017 * 60.00203 * 1 2 3 31 31 H 1.08999 * 109.47152 * 299.99956 * 1 2 3 32 32 H 1.09002 * 109.46962 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47426 * 119.99450 * 2 1 3 34 34 H 1.08999 * 109.47152 * 240.00044 * 2 1 3 35 35 H 1.09000 * 109.47101 * 299.99745 * 3 2 1 36 36 H 1.08999 * 109.47164 * 60.00051 * 3 2 1 37 37 H 1.08001 * 119.46730 * 179.97438 * 9 8 7 38 38 H 1.09003 * 109.46722 * 90.00444 * 11 10 9 39 39 H 1.09003 * 109.47460 * 210.00143 * 11 10 9 40 40 H 1.08994 * 109.46706 * 330.00472 * 11 10 9 41 41 H 1.08000 * 120.77978 * 179.97438 * 12 10 9 42 42 H 1.09001 * 109.46750 * 299.99927 * 15 14 13 43 43 H 1.08996 * 109.47251 * 59.99826 * 15 14 13 44 44 H 1.09003 * 109.46864 * 180.02562 * 15 14 13 45 45 H 1.08999 * 110.71881 * 271.93806 * 18 16 4 46 46 H 1.08999 * 110.71728 * 35.03614 * 18 16 4 47 47 H 1.08996 * 109.88301 * 97.22767 * 19 18 16 48 48 H 1.09010 * 109.87886 * 218.23473 * 19 18 16 49 49 H 0.97004 * 119.99883 * 180.02562 * 24 23 21 50 50 H 1.09001 * 110.36449 * 265.28975 * 29 20 19 51 51 H 1.08991 * 110.37129 * 142.96303 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1784 1.2824 -1.1571 6 8 5.3923 1.2194 -1.1498 7 6 3.4407 1.1832 -2.4344 8 7 2.1130 1.1349 -2.4276 9 6 1.4198 1.0462 -3.5401 10 6 2.0507 0.9996 -4.7751 11 6 1.2381 0.8984 -6.0402 12 6 3.4317 1.0469 -4.8353 13 6 4.1449 1.1464 -3.6424 14 8 5.5003 1.2012 -3.6521 15 6 6.1422 1.1584 -4.9281 16 6 4.2379 1.6168 1.2557 17 1 3.5527 1.8010 2.0832 18 6 5.1434 0.3907 1.5460 19 6 6.2670 0.9895 2.4180 20 7 6.3065 2.4341 2.1477 21 6 7.1536 3.3336 2.7379 22 1 7.1039 4.3786 2.4696 23 6 8.0764 2.9024 3.6810 24 7 8.1373 1.6289 4.0076 25 14 9.2325 4.1294 4.4855 26 1 8.4396 5.1590 5.2042 27 1 10.1137 3.4213 5.4485 28 1 10.0639 4.7832 3.4431 29 6 5.2832 2.7539 1.1358 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 0.3415 1.0088 -3.4926 38 1 1.0047 1.8994 -6.4031 39 1 1.8098 0.3616 -6.7974 40 1 0.3122 0.3611 -5.8352 41 1 3.9451 1.0117 -5.7849 42 1 5.8830 0.2284 -5.4341 43 1 5.8105 2.0043 -5.5302 44 1 7.2226 1.2094 -4.7932 45 1 4.5938 -0.3730 2.0962 46 1 5.5469 -0.0185 0.6198 47 1 6.0509 0.8154 3.4721 48 1 7.2223 0.5347 2.1555 49 1 8.7819 1.3276 4.6670 50 1 5.7243 2.7600 0.1390 51 1 4.8223 3.7173 1.3535 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267541458.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:52 Heat of formation + Delta-G solvation = 17.958523 kcal Electronic energy + Delta-G solvation = -32269.174150 eV Core-core repulsion = 28171.106110 eV Total energy + Delta-G solvation = -4098.068040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.22651 -39.43880 -38.42936 -36.56503 -35.72711 -33.89556 -32.78078 -31.60933 -31.11959 -29.06781 -28.39218 -27.66143 -26.87884 -25.68708 -24.38133 -23.51371 -22.72558 -21.71047 -20.93519 -19.85495 -19.26303 -17.76685 -17.47041 -17.00423 -16.67024 -16.11467 -15.58800 -15.46314 -14.76839 -14.62115 -14.43150 -14.24490 -14.13764 -14.01240 -13.69140 -13.58259 -13.21936 -13.04335 -12.89990 -12.73953 -12.52020 -12.24467 -12.13317 -11.93343 -11.65522 -11.62331 -11.56818 -11.51458 -11.16854 -10.77686 -10.73254 -10.55982 -10.44147 -10.17922 -9.99247 -9.89164 -9.72531 -9.54238 -9.35801 -8.92896 -8.59637 -8.42197 -8.01446 -6.59254 -5.53393 -2.85267 0.52083 1.01105 2.91300 2.98792 3.28143 3.51288 3.54713 3.56592 3.80783 4.08287 4.26829 4.43214 4.60278 4.63714 4.66941 4.83363 4.93270 5.06520 5.12725 5.15908 5.18281 5.23868 5.34752 5.47528 5.50098 5.56829 5.60352 5.62682 5.68916 5.80475 5.80680 5.94814 5.95423 6.02613 6.06069 6.09503 6.17304 6.29133 6.50576 6.59540 6.68925 6.77150 6.89091 6.93266 7.04320 7.43483 7.56346 7.73112 7.85303 7.89421 8.02034 8.44303 8.64233 9.40218 10.00869 10.69038 11.58324 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.003153 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.202824 B = 8877.264169 C =10269.579421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.105 3.895 4 N -0.587 5.587 5 C 0.563 3.437 6 O -0.493 6.493 7 C 0.042 3.958 8 N -0.401 5.401 9 C 0.046 3.954 10 C -0.078 4.078 11 C -0.114 4.114 12 C -0.181 4.181 13 C 0.143 3.857 14 O -0.268 6.268 15 C 0.020 3.980 16 C 0.132 3.868 17 H 0.091 0.909 18 C -0.153 4.153 19 C 0.186 3.814 20 N -0.602 5.602 21 C -0.220 4.220 22 H 0.075 0.925 23 C -0.011 4.011 24 N -0.923 5.923 25 Si 0.911 3.089 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.125 3.875 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.161 0.839 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.143 0.857 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.107 0.893 45 H 0.053 0.947 46 H 0.074 0.926 47 H 0.043 0.957 48 H 0.041 0.959 49 H 0.251 0.749 50 H 0.047 0.953 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.330 -3.987 -21.741 28.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.018 4.018 4 N -0.319 5.319 5 C 0.348 3.652 6 O -0.366 6.366 7 C -0.096 4.096 8 N -0.113 5.113 9 C -0.114 4.114 10 C -0.080 4.080 11 C -0.171 4.171 12 C -0.208 4.208 13 C 0.092 3.908 14 O -0.177 6.177 15 C -0.076 4.076 16 C 0.028 3.972 17 H 0.109 0.891 18 C -0.192 4.192 19 C 0.061 3.939 20 N -0.328 5.328 21 C -0.349 4.349 22 H 0.093 0.907 23 C -0.207 4.207 24 N -0.572 5.572 25 Si 0.742 3.258 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.001 4.001 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.082 0.918 37 H 0.178 0.822 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.161 0.839 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.125 0.875 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.064 0.936 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -17.693 -3.969 -20.568 27.420 hybrid contribution 0.913 0.479 -0.672 1.231 sum -16.780 -3.491 -21.240 27.293 Atomic orbital electron populations 1.21616 0.95748 1.01050 1.01503 1.21778 0.95477 0.97595 1.01667 1.22137 0.78835 0.97303 1.03497 1.47779 1.06866 1.70720 1.06563 1.17592 0.86677 0.78530 0.82364 1.90889 1.12267 1.47858 1.85624 1.20942 0.89287 1.06832 0.92583 1.68258 1.05492 1.08097 1.29435 1.22714 1.00513 1.01180 0.87021 1.20945 0.93624 0.96212 0.97235 1.20801 0.99578 1.02878 0.93846 1.21595 0.94581 1.06986 0.97602 1.20059 0.84470 0.92740 0.93560 1.86490 1.14579 1.85832 1.30800 1.23215 0.99239 1.00880 0.84226 1.22432 0.93334 0.97952 0.83457 0.89103 1.23228 0.98238 0.96441 1.01278 1.21025 0.93992 0.83223 0.95630 1.44306 1.38842 1.04189 1.45484 1.19006 1.10298 0.89318 1.16248 0.90683 1.24776 0.99732 0.96294 0.99916 1.69971 1.38443 1.12847 1.35897 0.86208 0.80684 0.80010 0.78917 1.21319 1.21705 1.21317 1.21884 0.89587 0.93957 0.94722 0.92623 0.93067 0.93297 0.92674 0.91891 0.87165 0.91768 0.82174 0.90370 0.91182 0.90649 0.83912 0.92661 0.92649 0.87499 0.92870 0.90777 0.93908 0.94078 0.93907 0.93579 0.95140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.91 37.16 0.37 -0.93 16 2 C -0.13 -1.52 5.58 -26.73 -0.15 -1.67 16 3 C 0.11 1.40 5.02 -4.04 -0.02 1.38 16 4 N -0.59 -10.12 2.58 -164.78 -0.43 -10.54 16 5 C 0.56 10.42 6.85 -12.33 -0.08 10.33 16 6 O -0.49 -11.03 11.21 -16.55 -0.19 -11.22 16 7 C 0.04 0.63 6.50 -82.88 -0.54 0.09 16 8 N -0.40 -4.79 4.33 -9.71 -0.04 -4.83 16 9 C 0.05 0.41 10.85 -17.55 -0.19 0.21 16 10 C -0.08 -0.62 5.90 -104.40 -0.62 -1.23 16 11 C -0.11 -0.50 10.03 36.01 0.36 -0.14 16 12 C -0.18 -1.71 8.80 -39.14 -0.34 -2.05 16 13 C 0.14 1.92 6.71 -38.56 -0.26 1.66 16 14 O -0.27 -3.97 8.58 -40.53 -0.35 -4.32 16 15 C 0.02 0.18 9.83 101.05 0.99 1.17 16 16 C 0.13 2.65 3.56 -65.78 -0.23 2.42 16 17 H 0.09 1.72 7.77 -51.93 -0.40 1.31 16 18 C -0.15 -3.36 6.33 -24.90 -0.16 -3.52 16 19 C 0.19 5.03 5.37 -3.07 -0.02 5.02 16 20 N -0.60 -16.99 3.39 -170.08 -0.58 -17.57 16 21 C -0.22 -6.62 10.28 -15.06 -0.15 -6.78 16 22 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 23 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 24 N -0.92 -28.80 10.31 55.49 0.57 -28.22 16 25 Si 0.91 23.35 29.55 -169.99 -5.02 18.32 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 C 0.13 3.01 6.58 -2.53 -0.02 2.99 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.83 6.72 -51.93 -0.35 0.48 16 35 H 0.11 1.39 5.24 -52.40 -0.27 1.12 16 36 H 0.06 0.80 7.78 -51.93 -0.40 0.40 16 37 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 40 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 41 H 0.14 0.96 6.46 -52.49 -0.34 0.62 16 42 H 0.05 0.39 7.68 -51.93 -0.40 -0.01 16 43 H 0.05 0.40 7.71 -51.93 -0.40 0.00 16 44 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.07 1.73 6.13 -51.93 -0.32 1.41 16 47 H 0.04 1.23 7.38 -51.93 -0.38 0.85 16 48 H 0.04 1.24 7.51 -51.92 -0.39 0.85 16 49 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 50 H 0.05 1.20 5.65 -51.93 -0.29 0.90 16 51 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -36.53 396.41 -9.36 -45.88 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -8.15 Total: -2.02 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -1.15 Total: 8.53 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: -0.47 Total: -61.16 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.53 Total: -15.53 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.53 -9.36 -45.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267541458.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.842 kcal (2) G-P(sol) polarization free energy of solvation -36.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds