Wall clock time and date at job start Wed Apr 1 2020 05:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46936 * 2 1 4 4 N 1.46497 * 109.47211 * 180.02562 * 3 2 1 5 5 C 1.34782 * 120.00022 * 82.09750 * 4 3 2 6 6 O 1.21556 * 119.99815 * 183.45711 * 5 4 3 7 7 C 1.47831 * 120.00060 * 3.46128 * 5 4 3 8 8 N 1.32863 * 119.77952 * 354.12484 * 7 5 4 9 9 C 1.31375 * 121.69327 * 180.02562 * 8 7 5 10 10 C 1.38767 * 121.06993 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.28243 * 180.02562 * 10 9 8 12 12 C 1.38311 * 119.44168 * 0.02562 * 10 9 8 13 13 C 1.39340 * 118.43898 * 359.72077 * 12 10 9 14 14 O 1.35655 * 120.54226 * 180.26502 * 13 12 10 15 15 C 1.42901 * 116.99689 * 0.27750 * 14 13 12 16 16 C 1.46496 * 120.00090 * 262.10264 * 4 3 2 17 17 H 1.08998 * 110.88896 * 356.11947 * 16 4 3 18 18 C 1.55163 * 111.00661 * 119.99847 * 16 4 3 19 19 C 1.54320 * 102.93962 * 153.57790 * 18 16 4 20 20 N 1.47016 * 107.27487 * 337.80397 * 19 18 16 21 21 C 1.36937 * 125.64949 * 178.96097 * 20 19 18 22 22 H 1.08003 * 120.00328 * 179.97438 * 21 20 19 23 23 C 1.38812 * 120.00040 * 359.97438 * 21 20 19 24 24 N 1.31615 * 119.99857 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00025 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47258 * 60.00222 * 25 23 21 27 27 H 1.48498 * 109.47204 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47176 * 299.99997 * 25 23 21 29 29 C 1.47425 * 108.70536 * 358.94699 * 20 19 18 30 30 H 1.09000 * 109.47017 * 60.00203 * 1 2 3 31 31 H 1.08999 * 109.47152 * 299.99956 * 1 2 3 32 32 H 1.09002 * 109.46962 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47426 * 119.99450 * 2 1 3 34 34 H 1.08999 * 109.47152 * 240.00044 * 2 1 3 35 35 H 1.09000 * 109.47101 * 299.99745 * 3 2 1 36 36 H 1.08999 * 109.47164 * 60.00051 * 3 2 1 37 37 H 1.08001 * 119.46730 * 179.97438 * 9 8 7 38 38 H 1.09003 * 109.46722 * 90.00444 * 11 10 9 39 39 H 1.09003 * 109.47460 * 210.00143 * 11 10 9 40 40 H 1.08994 * 109.46706 * 330.00472 * 11 10 9 41 41 H 1.08000 * 120.77978 * 179.97438 * 12 10 9 42 42 H 1.09001 * 109.46750 * 299.99927 * 15 14 13 43 43 H 1.08996 * 109.47251 * 59.99826 * 15 14 13 44 44 H 1.09003 * 109.46864 * 180.02562 * 15 14 13 45 45 H 1.08999 * 110.71881 * 271.93806 * 18 16 4 46 46 H 1.08999 * 110.71728 * 35.03614 * 18 16 4 47 47 H 1.08996 * 109.88301 * 97.22767 * 19 18 16 48 48 H 1.09010 * 109.87886 * 218.23473 * 19 18 16 49 49 H 0.97004 * 119.99883 * 180.02562 * 24 23 21 50 50 H 1.09001 * 110.36449 * 265.28975 * 29 20 19 51 51 H 1.08991 * 110.37129 * 142.96303 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1784 1.2824 -1.1571 6 8 5.3923 1.2194 -1.1498 7 6 3.4407 1.1832 -2.4344 8 7 2.1130 1.1349 -2.4276 9 6 1.4198 1.0462 -3.5401 10 6 2.0507 0.9996 -4.7751 11 6 1.2381 0.8984 -6.0402 12 6 3.4317 1.0469 -4.8353 13 6 4.1449 1.1464 -3.6424 14 8 5.5003 1.2012 -3.6521 15 6 6.1422 1.1584 -4.9281 16 6 4.2379 1.6168 1.2557 17 1 3.5527 1.8010 2.0832 18 6 5.1434 0.3907 1.5460 19 6 6.2670 0.9895 2.4180 20 7 6.3065 2.4341 2.1477 21 6 7.1536 3.3336 2.7379 22 1 7.1039 4.3786 2.4696 23 6 8.0764 2.9024 3.6810 24 7 8.1373 1.6289 4.0076 25 14 9.2325 4.1294 4.4855 26 1 8.4396 5.1590 5.2042 27 1 10.1137 3.4213 5.4485 28 1 10.0639 4.7832 3.4431 29 6 5.2832 2.7539 1.1358 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 0.3415 1.0088 -3.4926 38 1 1.0047 1.8994 -6.4031 39 1 1.8098 0.3616 -6.7974 40 1 0.3122 0.3611 -5.8352 41 1 3.9451 1.0117 -5.7849 42 1 5.8830 0.2284 -5.4341 43 1 5.8105 2.0043 -5.5302 44 1 7.2226 1.2094 -4.7932 45 1 4.5938 -0.3730 2.0962 46 1 5.5469 -0.0185 0.6198 47 1 6.0509 0.8154 3.4721 48 1 7.2223 0.5347 2.1555 49 1 8.7819 1.3276 4.6670 50 1 5.7243 2.7600 0.1390 51 1 4.8223 3.7173 1.3535 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267541458.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:51 Heat of formation + Delta-G solvation = -4.387622 kcal Electronic energy + Delta-G solvation = -32270.143152 eV Core-core repulsion = 28171.106110 eV Total energy + Delta-G solvation = -4099.037042 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.19168 -40.76852 -39.32143 -38.39069 -37.00823 -34.88976 -34.26254 -33.19850 -31.97577 -31.04976 -29.46400 -28.80486 -28.02154 -26.86680 -26.31922 -24.37297 -23.75158 -22.73830 -22.31556 -21.89251 -20.60210 -18.96972 -18.64200 -18.31130 -18.14029 -17.01337 -16.96007 -16.69544 -16.56531 -15.91254 -15.75324 -15.61425 -15.17844 -14.95074 -14.84448 -14.47791 -14.36267 -14.34315 -14.13564 -13.78110 -13.67294 -13.59363 -13.46608 -13.05725 -12.97117 -12.85510 -12.70518 -12.61911 -12.41195 -12.37951 -12.30712 -12.07722 -12.04710 -11.94534 -11.80277 -11.68930 -11.38149 -10.74932 -10.71656 -10.43942 -10.15034 -9.62275 -9.31109 -8.86301 -7.84438 -5.21156 -0.34112 0.24849 1.42694 1.48546 1.54613 1.81338 1.94998 2.22948 2.50262 2.81023 3.15010 3.32761 3.55912 3.66989 3.71976 3.92137 3.95103 3.97668 4.10511 4.15906 4.20240 4.27452 4.28652 4.30846 4.38021 4.54820 4.61328 4.66788 4.69293 4.72634 4.76522 4.84558 4.89046 4.94720 4.99649 5.02504 5.12882 5.15546 5.22969 5.23819 5.37166 5.40282 5.42575 5.50572 5.63214 5.69309 5.70040 5.86296 6.17629 6.24009 6.50971 6.78394 7.08164 7.30673 7.74919 8.42289 9.26167 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.003153 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.202824 B = 8877.264169 C =10269.579421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 C 0.103 3.897 4 N -0.587 5.587 5 C 0.556 3.444 6 O -0.548 6.548 7 C 0.000 4.000 8 N -0.406 5.406 9 C 0.049 3.951 10 C -0.059 4.059 11 C -0.113 4.113 12 C -0.179 4.179 13 C 0.126 3.874 14 O -0.314 6.314 15 C 0.012 3.988 16 C 0.151 3.849 17 H 0.111 0.889 18 C -0.136 4.136 19 C 0.199 3.801 20 N -0.621 5.621 21 C -0.246 4.246 22 H 0.080 0.920 23 C -0.069 4.069 24 N -0.953 5.953 25 Si 0.986 3.014 26 H -0.271 1.271 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.126 3.874 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.050 0.950 35 H 0.123 0.877 36 H 0.075 0.925 37 H 0.200 0.800 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.171 0.829 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.079 0.921 46 H 0.057 0.943 47 H 0.020 0.980 48 H -0.005 1.005 49 H 0.248 0.752 50 H 0.024 0.976 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.913 -3.434 -24.164 32.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.158 4.158 3 C -0.018 4.018 4 N -0.318 5.318 5 C 0.344 3.656 6 O -0.426 6.426 7 C -0.135 4.135 8 N -0.118 5.118 9 C -0.113 4.113 10 C -0.061 4.061 11 C -0.169 4.169 12 C -0.205 4.205 13 C 0.075 3.925 14 O -0.224 6.224 15 C -0.082 4.082 16 C 0.046 3.954 17 H 0.129 0.871 18 C -0.175 4.175 19 C 0.074 3.926 20 N -0.348 5.348 21 C -0.375 4.375 22 H 0.098 0.902 23 C -0.261 4.261 24 N -0.602 5.602 25 Si 0.813 3.187 26 H -0.197 1.197 27 H -0.216 1.216 28 H -0.206 1.206 29 C -0.001 4.001 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.140 0.860 36 H 0.093 0.907 37 H 0.217 0.783 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.188 0.812 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.122 0.878 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.038 0.962 48 H 0.013 0.987 49 H 0.057 0.943 50 H 0.042 0.958 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -21.323 -3.407 -23.011 31.556 hybrid contribution 1.944 0.288 -0.127 1.969 sum -19.380 -3.119 -23.138 30.342 Atomic orbital electron populations 1.21567 0.93058 1.01917 1.02612 1.21693 0.97649 0.96147 1.00301 1.22420 0.76153 0.98593 1.04616 1.47844 1.08359 1.70414 1.05165 1.18249 0.86419 0.77109 0.83809 1.90843 1.14723 1.50352 1.86655 1.20374 0.90536 1.11440 0.91184 1.68099 1.04070 1.08429 1.31159 1.23448 1.02058 0.99295 0.86508 1.21447 0.93230 0.92744 0.98650 1.20936 0.99843 1.04217 0.91933 1.21934 0.95348 1.06048 0.97136 1.20302 0.84233 0.93428 0.94553 1.86425 1.15891 1.86293 1.33813 1.23457 0.98923 1.02894 0.82938 1.22085 0.92807 0.94781 0.85734 0.87131 1.22991 0.97189 0.97637 0.99698 1.20723 0.93629 0.83160 0.95124 1.44614 1.39704 1.04439 1.46029 1.19436 1.11264 0.90013 1.16772 0.90231 1.25749 1.01399 0.98399 1.00569 1.70213 1.38949 1.14843 1.36185 0.85049 0.78230 0.77666 0.77733 1.19665 1.21640 1.20618 1.21913 0.89749 0.95924 0.92473 0.90996 0.92469 0.92561 0.94266 0.93098 0.85961 0.90676 0.78334 0.88828 0.90012 0.88690 0.81151 0.90518 0.90536 0.87824 0.90264 0.92446 0.96173 0.98660 0.94314 0.95781 0.94400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.12 -2.70 5.58 30.60 0.17 -2.53 16 3 C 0.10 2.63 5.02 86.38 0.43 3.06 16 4 N -0.59 -20.65 2.58 -793.50 -2.05 -22.70 16 5 C 0.56 21.65 6.85 86.78 0.59 22.24 16 6 O -0.55 -26.57 11.21 17.01 0.19 -26.38 16 7 C 0.00 0.00 6.50 41.93 0.27 0.27 16 8 N -0.41 -8.98 4.33 -184.63 -0.80 -9.78 16 9 C 0.05 0.68 10.85 84.89 0.92 1.60 16 10 C -0.06 -0.69 5.90 -19.72 -0.12 -0.80 16 11 C -0.11 -0.37 10.03 71.24 0.71 0.35 16 12 C -0.18 -2.93 8.80 22.55 0.20 -2.73 16 13 C 0.13 3.40 6.71 22.93 0.15 3.55 16 14 O -0.31 -9.81 8.58 -68.80 -0.59 -10.40 16 15 C 0.01 0.22 9.83 113.37 1.11 1.34 16 16 C 0.15 6.23 3.56 46.39 0.16 6.40 16 17 H 0.11 4.14 7.77 -2.39 -0.02 4.12 16 18 C -0.14 -6.29 6.33 31.78 0.20 -6.09 16 19 C 0.20 11.47 5.37 86.73 0.47 11.93 16 20 N -0.62 -36.92 3.39 -692.01 -2.35 -39.27 16 21 C -0.25 -15.36 10.28 84.03 0.86 -14.50 16 22 H 0.08 4.74 7.83 -2.91 -0.02 4.72 16 23 C -0.07 -4.24 5.49 84.86 0.47 -3.78 16 24 N -0.95 -62.05 10.31 21.65 0.22 -61.83 16 25 Si 0.99 49.14 29.55 68.60 2.03 51.17 16 26 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 27 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 28 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 29 C 0.13 6.32 6.58 86.86 0.57 6.89 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 33 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.28 6.72 -2.39 -0.02 1.27 16 35 H 0.12 2.87 5.24 -3.32 -0.02 2.86 16 36 H 0.07 1.73 7.78 -2.39 -0.02 1.71 16 37 H 0.20 1.14 8.06 -2.91 -0.02 1.12 16 38 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.08 0.16 8.09 -2.39 -0.02 0.14 16 40 H 0.09 0.03 8.09 -2.39 -0.02 0.01 16 41 H 0.17 1.71 6.46 -2.91 -0.02 1.69 16 42 H 0.08 1.01 7.68 -2.39 -0.02 1.00 16 43 H 0.08 1.02 7.71 -2.39 -0.02 1.00 16 44 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 46 H 0.06 2.87 6.13 -2.39 -0.01 2.85 16 47 H 0.02 1.23 7.38 -2.39 -0.02 1.21 16 48 H 0.00 -0.32 7.51 -2.38 -0.02 -0.34 16 49 H 0.25 15.53 8.31 -92.70 -0.77 14.76 16 50 H 0.02 1.35 5.65 -2.39 -0.01 1.34 16 51 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -87.52 396.41 5.48 -82.05 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.92 Total: 11.26 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: 7.90 Total: 25.88 kcal Atomic # 7 Polarization: -128.60 SS G_CDS: -4.97 Total: -133.58 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.40 Total: -36.78 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 2.03 Total: 51.17 kcal Total: -87.52 5.48 -82.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267541458.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.658 kcal (2) G-P(sol) polarization free energy of solvation -87.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds