Wall clock time and date at job start Wed Apr 1 2020 05:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47268 * 2 1 4 4 N 1.46498 * 109.47071 * 179.97438 * 3 2 1 5 5 C 1.34771 * 120.00521 * 268.50675 * 4 3 2 6 6 O 1.21278 * 120.00333 * 174.81419 * 5 4 3 7 7 C 1.50707 * 119.99937 * 354.82508 * 5 4 3 8 8 H 1.09003 * 109.46866 * 45.06682 * 7 5 4 9 9 C 1.52998 * 109.46807 * 285.06570 * 7 5 4 10 10 O 1.42901 * 109.47129 * 165.06756 * 7 5 4 11 11 C 1.35912 * 116.99726 * 205.15374 * 10 7 5 12 12 C 1.39139 * 120.47228 * 354.35980 * 11 10 7 13 13 C 1.38537 * 118.37163 * 180.02562 * 12 11 10 14 14 C 1.38258 * 119.22482 * 0.02562 * 13 12 11 15 15 N 1.31850 * 120.88211 * 359.97438 * 14 13 12 16 16 C 1.31842 * 121.78309 * 359.70692 * 15 14 13 17 17 C 1.46505 * 119.99618 * 88.51150 * 4 3 2 18 18 H 1.08998 * 110.88859 * 359.30112 * 17 4 3 19 19 C 1.55157 * 111.00123 * 123.17798 * 17 4 3 20 20 C 1.54328 * 102.94096 * 153.61283 * 19 17 4 21 21 N 1.47018 * 107.27096 * 337.80723 * 20 19 17 22 22 C 1.36938 * 125.65030 * 178.98081 * 21 20 19 23 23 H 1.07995 * 120.00340 * 179.97438 * 22 21 20 24 24 C 1.38817 * 119.99850 * 359.97438 * 22 21 20 25 25 N 1.31617 * 119.99660 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99916 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46855 * 60.00281 * 26 24 22 28 28 H 1.48502 * 109.47016 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.46938 * 300.00046 * 26 24 22 30 30 C 1.47425 * 108.70388 * 358.94145 * 21 20 19 31 31 H 1.08993 * 109.46898 * 59.99679 * 1 2 3 32 32 H 1.08998 * 109.47293 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46607 * 299.99932 * 1 2 3 34 34 H 1.08998 * 109.46995 * 239.99794 * 2 1 3 35 35 H 1.09004 * 109.47241 * 120.00622 * 2 1 3 36 36 H 1.09005 * 109.46761 * 60.00344 * 3 2 1 37 37 H 1.08993 * 109.47423 * 300.00000 * 3 2 1 38 38 H 1.09006 * 109.47242 * 53.92740 * 9 7 5 39 39 H 1.08997 * 109.47410 * 173.92705 * 9 7 5 40 40 H 1.08998 * 109.47273 * 293.92712 * 9 7 5 41 41 H 1.07998 * 120.81518 * 0.02562 * 12 11 10 42 42 H 1.08003 * 120.39174 * 179.97438 * 13 12 11 43 43 H 1.07998 * 119.55973 * 179.97438 * 14 13 12 44 44 H 1.07995 * 119.66145 * 180.29003 * 16 15 14 45 45 H 1.09001 * 110.72196 * 271.97294 * 19 17 4 46 46 H 1.09002 * 110.72069 * 35.07986 * 19 17 4 47 47 H 1.09002 * 109.88006 * 97.22168 * 20 19 17 48 48 H 1.08997 * 109.88547 * 218.23475 * 20 19 17 49 49 H 0.97000 * 119.99306 * 180.02562 * 25 24 22 50 50 H 1.09002 * 110.36593 * 265.28688 * 30 21 20 51 51 H 1.09001 * 110.36960 * 142.96879 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1785 1.4730 1.1676 6 8 5.3875 1.3781 1.1727 7 6 3.4291 1.6248 2.4663 8 1 2.5644 0.9612 2.4665 9 6 2.9605 3.0733 2.6183 10 8 4.2900 1.2860 3.5554 11 6 3.6966 0.8584 4.7009 12 6 2.3109 0.8739 4.8261 13 6 1.7521 0.4288 6.0130 14 6 2.5827 -0.0122 7.0265 15 7 3.8925 -0.0139 6.8756 16 6 4.4635 0.3955 5.7600 17 6 4.2380 1.4092 -1.2675 18 1 3.5508 1.3748 -2.1128 19 6 5.2026 2.6189 -1.3840 20 6 6.3024 2.0940 -2.3309 21 7 6.2713 0.6257 -2.2645 22 6 7.0790 -0.2226 -2.9739 23 1 6.9778 -1.2911 -2.8538 24 6 8.0279 0.2909 -3.8473 25 7 8.1509 1.5930 -3.9940 26 14 9.1302 -0.8663 -4.8145 27 1 8.2943 -1.7466 -5.6698 28 1 10.0500 -0.0742 -5.6699 29 1 9.9220 -1.6979 -3.8729 30 6 5.2272 0.2178 -1.3070 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3632 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.6767 1.9563 0.8901 37 1 1.6768 1.9563 -0.8899 38 1 2.3928 3.3661 1.7349 39 1 2.3280 3.1598 3.5017 40 1 3.8267 3.7260 2.7263 41 1 1.6863 1.2243 4.0178 42 1 0.6802 0.4271 6.1455 43 1 2.1529 -0.3600 7.9543 44 1 5.5396 0.3751 5.6717 45 1 4.6936 3.4773 -1.8225 46 1 5.6190 2.8754 -0.4098 47 1 6.1018 2.4233 -3.3505 48 1 7.2763 2.4615 -2.0077 49 1 8.8137 1.9518 -4.6046 50 1 5.6608 0.0518 -0.3208 51 1 4.7225 -0.6828 -1.6568 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267545823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:58 Heat of formation + Delta-G solvation = 5.132968 kcal Electronic energy + Delta-G solvation = -31801.752552 eV Core-core repulsion = 27703.128354 eV Total energy + Delta-G solvation = -4098.624198 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.20128 -40.19167 -38.43124 -36.68078 -36.14079 -33.10999 -32.74651 -32.45588 -31.54408 -30.29138 -29.06752 -27.40149 -26.32976 -25.12090 -24.39989 -23.84885 -23.03222 -21.86898 -21.06090 -20.02632 -19.00043 -18.64462 -17.37400 -17.05594 -16.80275 -16.41103 -16.04526 -15.73805 -15.05100 -14.85036 -14.67995 -14.55760 -14.36312 -14.13597 -13.94196 -13.78947 -13.44733 -13.16404 -13.04526 -12.67598 -12.64586 -12.31948 -12.27900 -12.23826 -11.97344 -11.84549 -11.72287 -11.61311 -11.37760 -10.96965 -10.86417 -10.79072 -10.65488 -10.27338 -10.11836 -10.07156 -9.90952 -9.87214 -9.60647 -9.16399 -8.68699 -8.57306 -8.39238 -6.70223 -5.62456 -2.94850 0.82971 0.93379 2.34771 2.63436 3.26929 3.46087 3.50188 3.50689 3.51695 4.12230 4.23917 4.28451 4.43114 4.47919 4.55661 4.58134 4.61362 4.74038 4.78397 4.88853 4.97500 5.10690 5.17004 5.20437 5.30248 5.39869 5.44077 5.45800 5.53746 5.62584 5.67243 5.73415 5.74389 5.76148 5.78377 5.81985 5.89185 6.02384 6.09004 6.19066 6.47821 6.59114 6.63598 6.72816 6.92830 7.20280 7.48052 7.64075 7.68156 7.73132 7.90696 8.26909 8.35413 9.30892 9.91267 10.58009 11.49373 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.002757 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.728444 B =10153.501631 C =11066.887843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.100 3.900 4 N -0.599 5.599 5 C 0.514 3.486 6 O -0.486 6.486 7 C 0.065 3.935 8 H 0.093 0.907 9 C -0.178 4.178 10 O -0.275 6.275 11 C 0.086 3.914 12 C -0.171 4.171 13 C -0.131 4.131 14 C 0.052 3.948 15 N -0.446 5.446 16 C 0.077 3.923 17 C 0.133 3.867 18 H 0.094 0.906 19 C -0.154 4.154 20 C 0.186 3.814 21 N -0.601 5.601 22 C -0.223 4.223 23 H 0.076 0.924 24 C -0.010 4.010 25 N -0.923 5.923 26 Si 0.912 3.088 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.125 3.875 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.157 0.843 44 H 0.166 0.834 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.045 0.955 48 H 0.043 0.957 49 H 0.252 0.748 50 H 0.048 0.952 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.517 2.041 16.701 27.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C -0.023 4.023 4 N -0.334 5.334 5 C 0.298 3.702 6 O -0.358 6.358 7 C 0.004 3.996 8 H 0.110 0.890 9 C -0.235 4.235 10 O -0.186 6.186 11 C 0.038 3.962 12 C -0.198 4.198 13 C -0.151 4.151 14 C -0.104 4.104 15 N -0.155 5.155 16 C -0.082 4.082 17 C 0.030 3.970 18 H 0.112 0.888 19 C -0.193 4.193 20 C 0.060 3.940 21 N -0.328 5.328 22 C -0.352 4.352 23 H 0.094 0.906 24 C -0.206 4.206 25 N -0.571 5.571 26 Si 0.742 3.258 27 H -0.213 1.213 28 H -0.216 1.216 29 H -0.212 1.212 30 C -0.002 4.002 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.174 0.826 44 H 0.184 0.816 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.066 0.934 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -19.915 1.759 17.161 26.348 hybrid contribution -0.381 -0.252 -1.341 1.417 sum -20.296 1.507 15.820 25.777 Atomic orbital electron populations 1.21706 0.95021 1.02122 1.01851 1.22026 0.96079 0.97152 1.03358 1.21851 0.79909 0.97160 1.03423 1.47860 1.06037 1.73668 1.05806 1.19836 0.88113 0.78168 0.84041 1.90814 1.13350 1.45544 1.86105 1.22379 0.93111 0.98315 0.85767 0.88955 1.22381 1.03195 0.94424 1.03508 1.86290 1.34152 1.79135 1.18979 1.20299 0.92281 0.95318 0.88310 1.21772 0.93876 1.04215 0.99921 1.21987 1.01501 0.98203 0.93360 1.22680 0.88988 0.99336 0.99426 1.67760 1.13042 1.12599 1.22122 1.22315 1.00991 0.97714 0.87138 1.22472 0.93313 0.98632 0.82591 0.88815 1.23243 0.98091 0.96100 1.01871 1.21040 0.94262 0.83251 0.95402 1.44301 1.38948 1.02070 1.47506 1.18997 1.10976 0.88754 1.16443 0.90629 1.24786 0.99568 0.96047 1.00171 1.69955 1.37275 1.09702 1.40197 0.86196 0.80351 0.79559 0.79649 1.21274 1.21635 1.21201 1.21924 0.89654 0.93436 0.95215 0.92316 0.92347 0.92802 0.90704 0.91996 0.90523 0.89716 0.89809 0.90941 0.90093 0.84245 0.84503 0.82559 0.81649 0.92567 0.90986 0.93732 0.93918 0.93802 0.93433 0.95115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.15 -1.26 6.19 -26.73 -0.17 -1.42 16 3 C 0.10 0.88 4.84 -4.04 -0.02 0.86 16 4 N -0.60 -8.20 2.56 -163.67 -0.42 -8.62 16 5 C 0.51 7.91 6.22 -10.98 -0.07 7.84 16 6 O -0.49 -10.09 12.64 -13.89 -0.18 -10.27 16 7 C 0.06 0.72 1.79 -27.88 -0.05 0.67 16 8 H 0.09 0.81 4.91 -51.93 -0.25 0.55 16 9 C -0.18 -1.51 8.83 37.16 0.33 -1.18 16 10 O -0.27 -3.71 9.39 -38.92 -0.37 -4.07 16 11 C 0.09 0.98 6.62 -39.07 -0.26 0.72 16 12 C -0.17 -1.45 8.41 -39.14 -0.33 -1.78 16 13 C -0.13 -0.94 10.11 -39.46 -0.40 -1.34 16 14 C 0.05 0.45 11.18 -17.54 -0.20 0.25 16 15 N -0.45 -5.06 10.36 -13.12 -0.14 -5.19 16 16 C 0.08 0.90 11.14 -17.37 -0.19 0.71 16 17 C 0.13 2.34 3.55 -65.78 -0.23 2.11 16 18 H 0.09 1.52 7.91 -51.93 -0.41 1.11 16 19 C -0.15 -3.06 6.31 -24.89 -0.16 -3.22 16 20 C 0.19 4.75 5.37 -3.06 -0.02 4.73 16 21 N -0.60 -16.24 3.39 -170.07 -0.58 -16.82 16 22 C -0.22 -6.52 10.28 -15.06 -0.15 -6.67 16 23 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 24 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 25 N -0.92 -28.05 10.31 55.49 0.57 -27.47 16 26 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 C 0.12 2.78 6.60 -2.53 -0.02 2.77 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 36 H 0.08 0.49 4.68 -51.93 -0.24 0.25 16 37 H 0.08 0.67 7.99 -51.93 -0.42 0.26 16 38 H 0.08 0.58 6.33 -51.93 -0.33 0.25 16 39 H 0.07 0.47 6.88 -51.93 -0.36 0.11 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.14 0.86 5.51 -52.49 -0.29 0.57 16 42 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 43 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.07 1.52 6.16 -51.93 -0.32 1.20 16 47 H 0.04 1.22 7.38 -51.93 -0.38 0.84 16 48 H 0.04 1.24 7.50 -51.93 -0.39 0.85 16 49 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 50 H 0.05 1.17 5.63 -51.93 -0.29 0.88 16 51 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -36.00 398.20 -9.64 -45.64 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -7.86 Total: -1.16 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -1.66 Total: 4.11 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.56 Total: -58.10 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.54 Total: -14.34 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.00 -9.64 -45.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267545823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.771 kcal (2) G-P(sol) polarization free energy of solvation -36.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds