Wall clock time and date at job start Wed Apr 1 2020 05:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47268 * 2 1 4 4 N 1.46498 * 109.47071 * 179.97438 * 3 2 1 5 5 C 1.34771 * 120.00521 * 268.50675 * 4 3 2 6 6 O 1.21278 * 120.00333 * 174.81419 * 5 4 3 7 7 C 1.50707 * 119.99937 * 354.82508 * 5 4 3 8 8 H 1.09003 * 109.46866 * 45.06682 * 7 5 4 9 9 C 1.52998 * 109.46807 * 285.06570 * 7 5 4 10 10 O 1.42901 * 109.47129 * 165.06756 * 7 5 4 11 11 C 1.35912 * 116.99726 * 205.15374 * 10 7 5 12 12 C 1.39139 * 120.47228 * 354.35980 * 11 10 7 13 13 C 1.38537 * 118.37163 * 180.02562 * 12 11 10 14 14 C 1.38258 * 119.22482 * 0.02562 * 13 12 11 15 15 N 1.31850 * 120.88211 * 359.97438 * 14 13 12 16 16 C 1.31842 * 121.78309 * 359.70692 * 15 14 13 17 17 C 1.46505 * 119.99618 * 88.51150 * 4 3 2 18 18 H 1.08998 * 110.88859 * 359.30112 * 17 4 3 19 19 C 1.55157 * 111.00123 * 123.17798 * 17 4 3 20 20 C 1.54328 * 102.94096 * 153.61283 * 19 17 4 21 21 N 1.47018 * 107.27096 * 337.80723 * 20 19 17 22 22 C 1.36938 * 125.65030 * 178.98081 * 21 20 19 23 23 H 1.07995 * 120.00340 * 179.97438 * 22 21 20 24 24 C 1.38817 * 119.99850 * 359.97438 * 22 21 20 25 25 N 1.31617 * 119.99660 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99916 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46855 * 60.00281 * 26 24 22 28 28 H 1.48502 * 109.47016 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.46938 * 300.00046 * 26 24 22 30 30 C 1.47425 * 108.70388 * 358.94145 * 21 20 19 31 31 H 1.08993 * 109.46898 * 59.99679 * 1 2 3 32 32 H 1.08998 * 109.47293 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46607 * 299.99932 * 1 2 3 34 34 H 1.08998 * 109.46995 * 239.99794 * 2 1 3 35 35 H 1.09004 * 109.47241 * 120.00622 * 2 1 3 36 36 H 1.09005 * 109.46761 * 60.00344 * 3 2 1 37 37 H 1.08993 * 109.47423 * 300.00000 * 3 2 1 38 38 H 1.09006 * 109.47242 * 53.92740 * 9 7 5 39 39 H 1.08997 * 109.47410 * 173.92705 * 9 7 5 40 40 H 1.08998 * 109.47273 * 293.92712 * 9 7 5 41 41 H 1.07998 * 120.81518 * 0.02562 * 12 11 10 42 42 H 1.08003 * 120.39174 * 179.97438 * 13 12 11 43 43 H 1.07998 * 119.55973 * 179.97438 * 14 13 12 44 44 H 1.07995 * 119.66145 * 180.29003 * 16 15 14 45 45 H 1.09001 * 110.72196 * 271.97294 * 19 17 4 46 46 H 1.09002 * 110.72069 * 35.07986 * 19 17 4 47 47 H 1.09002 * 109.88006 * 97.22168 * 20 19 17 48 48 H 1.08997 * 109.88547 * 218.23475 * 20 19 17 49 49 H 0.97000 * 119.99306 * 180.02562 * 25 24 22 50 50 H 1.09002 * 110.36593 * 265.28688 * 30 21 20 51 51 H 1.09001 * 110.36960 * 142.96879 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1785 1.4730 1.1676 6 8 5.3875 1.3781 1.1727 7 6 3.4291 1.6248 2.4663 8 1 2.5644 0.9612 2.4665 9 6 2.9605 3.0733 2.6183 10 8 4.2900 1.2860 3.5554 11 6 3.6966 0.8584 4.7009 12 6 2.3109 0.8739 4.8261 13 6 1.7521 0.4288 6.0130 14 6 2.5827 -0.0122 7.0265 15 7 3.8925 -0.0139 6.8756 16 6 4.4635 0.3955 5.7600 17 6 4.2380 1.4092 -1.2675 18 1 3.5508 1.3748 -2.1128 19 6 5.2026 2.6189 -1.3840 20 6 6.3024 2.0940 -2.3309 21 7 6.2713 0.6257 -2.2645 22 6 7.0790 -0.2226 -2.9739 23 1 6.9778 -1.2911 -2.8538 24 6 8.0279 0.2909 -3.8473 25 7 8.1509 1.5930 -3.9940 26 14 9.1302 -0.8663 -4.8145 27 1 8.2943 -1.7466 -5.6698 28 1 10.0500 -0.0742 -5.6699 29 1 9.9220 -1.6979 -3.8729 30 6 5.2272 0.2178 -1.3070 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3632 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.6767 1.9563 0.8901 37 1 1.6768 1.9563 -0.8899 38 1 2.3928 3.3661 1.7349 39 1 2.3280 3.1598 3.5017 40 1 3.8267 3.7260 2.7263 41 1 1.6863 1.2243 4.0178 42 1 0.6802 0.4271 6.1455 43 1 2.1529 -0.3600 7.9543 44 1 5.5396 0.3751 5.6717 45 1 4.6936 3.4773 -1.8225 46 1 5.6190 2.8754 -0.4098 47 1 6.1018 2.4233 -3.3505 48 1 7.2763 2.4615 -2.0077 49 1 8.8137 1.9518 -4.6046 50 1 5.6608 0.0518 -0.3208 51 1 4.7225 -0.6828 -1.6568 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267545823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:57 Heat of formation + Delta-G solvation = -18.163553 kcal Electronic energy + Delta-G solvation = -31802.762765 eV Core-core repulsion = 27703.128354 eV Total energy + Delta-G solvation = -4099.634411 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.11572 -41.21727 -39.41845 -38.29103 -37.25627 -34.67772 -33.60401 -33.20540 -32.91583 -31.13342 -30.87521 -29.04899 -27.13759 -26.69406 -25.56751 -24.66911 -23.96399 -22.62211 -22.33390 -22.02241 -20.12042 -19.52257 -18.90982 -18.32847 -17.73572 -17.37879 -17.05987 -16.83152 -16.65674 -16.09662 -15.81473 -15.65559 -15.47005 -15.26450 -14.82933 -14.64775 -14.56410 -14.39457 -14.19393 -14.00491 -13.68683 -13.65061 -13.41225 -13.25862 -12.97360 -12.89095 -12.78096 -12.73085 -12.57483 -12.50724 -12.23328 -12.08950 -12.05263 -11.98646 -11.85632 -11.67237 -11.47444 -10.79049 -10.73047 -10.57218 -10.48393 -9.70878 -9.46698 -8.88331 -7.86962 -5.22929 0.15140 0.24946 1.35573 1.41993 1.46833 1.51274 1.53173 2.31142 2.49234 2.80730 3.20715 3.31308 3.52236 3.58261 3.68970 3.76064 3.80260 3.85097 3.89647 3.94675 4.01531 4.15486 4.17845 4.21160 4.31310 4.38533 4.52754 4.54937 4.61648 4.64632 4.70198 4.73021 4.78575 4.89882 4.94862 5.00659 5.02650 5.07021 5.08662 5.13022 5.24852 5.30852 5.39181 5.46405 5.50435 5.62412 5.65713 5.72637 6.14418 6.16965 6.39233 6.97904 7.06929 7.12915 7.74127 8.39720 9.23393 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.002757 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.728444 B =10153.501631 C =11066.887843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.146 4.146 3 C 0.092 3.908 4 N -0.591 5.591 5 C 0.506 3.494 6 O -0.554 6.554 7 C 0.071 3.929 8 H 0.125 0.875 9 C -0.173 4.173 10 O -0.310 6.310 11 C 0.066 3.934 12 C -0.164 4.164 13 C -0.116 4.116 14 C 0.046 3.954 15 N -0.474 5.474 16 C 0.047 3.953 17 C 0.155 3.845 18 H 0.119 0.881 19 C -0.138 4.138 20 C 0.195 3.805 21 N -0.623 5.623 22 C -0.246 4.246 23 H 0.078 0.922 24 C -0.067 4.067 25 N -0.952 5.952 26 Si 0.982 3.018 27 H -0.271 1.271 28 H -0.290 1.290 29 H -0.282 1.282 30 C 0.121 3.879 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.171 0.829 42 H 0.181 0.819 43 H 0.185 0.815 44 H 0.150 0.850 45 H 0.090 0.910 46 H 0.057 0.943 47 H 0.022 0.978 48 H -0.007 1.007 49 H 0.248 0.752 50 H 0.023 0.977 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.457 2.070 17.538 31.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.185 4.185 3 C -0.029 4.029 4 N -0.324 5.324 5 C 0.293 3.707 6 O -0.431 6.431 7 C 0.012 3.988 8 H 0.142 0.858 9 C -0.230 4.230 10 O -0.223 6.223 11 C 0.019 3.981 12 C -0.190 4.190 13 C -0.135 4.135 14 C -0.111 4.111 15 N -0.184 5.184 16 C -0.110 4.110 17 C 0.050 3.950 18 H 0.137 0.863 19 C -0.177 4.177 20 C 0.069 3.931 21 N -0.350 5.350 22 C -0.375 4.375 23 H 0.096 0.904 24 C -0.260 4.260 25 N -0.600 5.600 26 Si 0.810 3.190 27 H -0.196 1.196 28 H -0.216 1.216 29 H -0.208 1.208 30 C -0.005 4.005 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.076 0.924 41 H 0.188 0.812 42 H 0.198 0.802 43 H 0.202 0.798 44 H 0.167 0.833 45 H 0.109 0.891 46 H 0.075 0.925 47 H 0.040 0.960 48 H 0.011 0.989 49 H 0.057 0.943 50 H 0.041 0.959 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -24.926 1.777 18.019 30.808 hybrid contribution 1.111 -0.326 -1.484 1.882 sum -23.816 1.451 16.534 29.029 Atomic orbital electron populations 1.21676 0.92654 1.02512 1.03312 1.21994 0.98012 0.96466 1.01996 1.22295 0.76232 0.98097 1.06228 1.47865 1.08063 1.72598 1.03873 1.20754 0.87661 0.76465 0.85820 1.90793 1.16514 1.48554 1.87211 1.22453 0.92599 1.00824 0.82938 0.85756 1.22420 1.02917 0.91706 1.05947 1.86246 1.36002 1.79917 1.20098 1.20382 0.93773 0.96487 0.87482 1.22136 0.92475 1.03156 1.01281 1.22448 1.03422 0.95770 0.91908 1.23317 0.88217 0.98521 1.01085 1.67733 1.14945 1.13558 1.22131 1.22206 1.00857 0.99676 0.88303 1.22067 0.92831 0.94528 0.85530 0.86287 1.23018 0.96966 0.98012 0.99689 1.20770 0.93994 0.82990 0.95332 1.44622 1.39921 1.02557 1.47853 1.19401 1.11844 0.89410 1.16838 0.90432 1.25703 1.01067 0.97768 1.01422 1.70192 1.37715 1.11460 1.40668 0.85102 0.78277 0.77553 0.78088 1.19628 1.21631 1.20844 1.21992 0.89767 0.95934 0.92770 0.91721 0.92583 0.90478 0.93029 0.92648 0.86954 0.87704 0.87461 0.88040 0.92392 0.81178 0.80180 0.79800 0.83278 0.89134 0.92475 0.96024 0.98913 0.94298 0.95928 0.94571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.91 71.98 0.71 -0.41 16 2 C -0.15 -2.00 6.19 30.59 0.19 -1.81 16 3 C 0.09 1.24 4.84 86.38 0.42 1.66 16 4 N -0.59 -15.14 2.56 -790.14 -2.02 -17.16 16 5 C 0.51 15.43 6.22 87.66 0.55 15.97 16 6 O -0.55 -24.35 12.64 15.58 0.20 -24.15 16 7 C 0.07 1.46 1.79 29.85 0.05 1.51 16 8 H 0.13 1.66 4.91 -2.39 -0.01 1.65 16 9 C -0.17 -2.36 8.83 71.98 0.64 -1.72 16 10 O -0.31 -8.48 9.39 -73.95 -0.69 -9.17 16 11 C 0.07 1.46 6.62 22.60 0.15 1.61 16 12 C -0.16 -2.17 8.41 22.56 0.19 -1.98 16 13 C -0.12 -1.16 10.11 22.35 0.23 -0.93 16 14 C 0.05 0.67 11.18 84.69 0.95 1.61 16 15 N -0.47 -10.67 10.36 -195.44 -2.02 -12.70 16 16 C 0.05 1.15 11.14 84.80 0.94 2.10 16 17 C 0.15 5.35 3.55 46.38 0.16 5.52 16 18 H 0.12 3.57 7.91 -2.39 -0.02 3.55 16 19 C -0.14 -5.56 6.31 31.78 0.20 -5.36 16 20 C 0.19 10.51 5.37 86.73 0.47 10.97 16 21 N -0.62 -35.20 3.39 -691.99 -2.35 -37.55 16 22 C -0.25 -14.92 10.28 84.03 0.86 -14.05 16 23 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 24 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 25 N -0.95 -60.37 10.31 21.65 0.22 -60.14 16 26 Si 0.98 48.23 29.55 68.60 2.03 50.26 16 27 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 28 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 29 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 30 C 0.12 5.61 6.60 86.85 0.57 6.19 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.05 0.83 7.65 -2.38 -0.02 0.81 16 36 H 0.11 0.76 4.68 -2.38 -0.01 0.75 16 37 H 0.10 1.10 7.99 -2.39 -0.02 1.08 16 38 H 0.11 0.94 6.33 -2.38 -0.02 0.92 16 39 H 0.10 0.82 6.88 -2.39 -0.02 0.81 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.17 1.07 5.51 -2.91 -0.02 1.06 16 42 H 0.18 0.26 8.06 -2.91 -0.02 0.24 16 43 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 44 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 45 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 46 H 0.06 2.50 6.16 -2.39 -0.01 2.48 16 47 H 0.02 1.24 7.38 -2.39 -0.02 1.23 16 48 H -0.01 -0.47 7.50 -2.39 -0.02 -0.48 16 49 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 50 H 0.02 1.19 5.63 -2.39 -0.01 1.18 16 51 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -88.31 398.20 4.03 -84.28 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.93 Total: 9.03 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 7.75 Total: 17.31 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -6.17 Total: -127.56 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.50 Total: -33.33 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -88.31 4.03 -84.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267545823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.113 kcal (2) G-P(sol) polarization free energy of solvation -88.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds