Wall clock time and date at job start Wed Apr 1 2020 05:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46812 * 2 1 4 4 N 1.46501 * 109.46944 * 179.97438 * 3 2 1 5 5 C 1.36932 * 119.99931 * 179.97438 * 4 3 2 6 6 H 1.08006 * 120.00394 * 0.02562 * 5 4 3 7 7 C 1.38810 * 120.00404 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99655 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00486 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47214 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47080 * 120.00117 * 9 7 5 12 12 H 1.48496 * 109.47098 * 239.99849 * 9 7 5 13 13 N 1.46499 * 109.47176 * 119.99794 * 2 1 3 14 14 C 1.34779 * 120.00251 * 304.30169 * 13 2 1 15 15 O 1.21501 * 119.99683 * 354.97962 * 14 13 2 16 16 C 1.48326 * 120.00032 * 174.99026 * 14 13 2 17 17 N 1.31337 * 127.13289 * 359.94639 * 16 14 13 18 18 O 1.21243 * 111.48586 * 179.97438 * 17 16 14 19 19 C 1.33634 * 111.64244 * 359.62831 * 18 17 16 20 20 C 1.34985 * 106.60190 * 0.67178 * 19 18 17 21 21 C 1.50080 * 126.60609 * 179.22650 * 20 19 18 22 22 C 1.53331 * 109.03321 * 27.93607 * 21 20 19 23 23 C 1.52542 * 109.60552 * 271.61128 * 22 21 20 24 24 C 1.52624 * 110.98634 * 61.28430 * 23 22 21 25 25 C 1.50617 * 127.99995 * 181.61071 * 19 18 17 26 26 C 1.52997 * 109.47190 * 239.99916 * 2 1 3 27 27 C 1.53005 * 117.50007 * 12.74911 * 26 2 1 28 28 C 1.53000 * 117.50059 * 304.08688 * 26 2 1 29 29 H 1.08994 * 109.47302 * 299.99763 * 1 2 3 30 30 H 1.08993 * 109.46981 * 59.99935 * 1 2 3 31 31 H 1.09004 * 109.46532 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47301 * 300.00093 * 3 2 1 33 33 H 1.09004 * 109.46903 * 60.00066 * 3 2 1 34 34 H 0.96993 * 120.00091 * 0.02562 * 4 3 2 35 35 H 0.97002 * 120.00123 * 180.02562 * 8 7 5 36 36 H 0.97004 * 120.00197 * 124.29475 * 13 2 1 37 37 H 1.08994 * 109.56103 * 147.83508 * 21 20 19 38 38 H 1.08999 * 109.55721 * 268.04714 * 21 20 19 39 39 H 1.09006 * 109.45959 * 31.54361 * 22 21 20 40 40 H 1.08997 * 109.46069 * 151.49421 * 22 21 20 41 41 H 1.08993 * 109.10773 * 300.92376 * 23 22 21 42 42 H 1.08996 * 109.19865 * 181.70208 * 23 22 21 43 43 H 1.09009 * 109.39998 * 273.58011 * 24 23 22 44 44 H 1.09001 * 109.33521 * 153.79734 * 24 23 22 45 45 H 1.08998 * 109.53036 * 345.80710 * 25 19 18 46 46 H 1.09001 * 109.53184 * 105.95546 * 25 19 18 47 47 H 1.09001 * 115.54683 * 158.41774 * 26 2 1 48 48 H 1.08995 * 117.49567 * 359.97438 * 27 26 2 49 49 H 1.08998 * 117.49589 * 145.01673 * 27 26 2 50 50 H 1.08996 * 117.50050 * 214.98027 * 28 26 2 51 51 H 1.08997 * 117.49391 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1896 2.6285 0.0002 6 1 3.6496 3.5638 -0.0002 7 6 5.5777 2.6286 0.0002 8 7 6.2359 1.4887 0.0002 9 14 6.5117 4.2463 0.0004 10 1 5.5467 5.3750 -0.0002 11 1 7.3654 4.3249 1.2130 12 1 7.3655 4.3251 -1.2120 13 7 2.0184 -0.6906 1.1962 14 6 1.6229 -0.2828 2.4184 15 8 0.9353 0.7122 2.5338 16 6 2.0273 -1.0487 3.6226 17 7 2.7622 -2.1365 3.6605 18 8 2.9189 -2.5272 4.7975 19 6 2.3055 -1.7334 5.6803 20 6 1.7004 -0.7594 4.9680 21 6 0.8698 0.3647 5.5146 22 6 1.3383 0.6860 6.9388 23 6 0.5814 -0.1861 7.9355 24 6 0.8532 -1.6666 7.6831 25 6 2.2885 -1.8549 7.1815 26 6 2.0401 -0.7212 -1.2492 27 6 1.0276 -1.0156 -2.3579 28 6 1.5585 -2.1544 -1.4836 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.9900 0.6026 0.0006 35 1 7.2059 1.4888 0.0006 36 1 2.6263 -1.4414 1.1086 37 1 0.9880 1.2459 4.8840 38 1 -0.1788 0.0678 5.5337 39 1 2.4067 0.4870 7.0232 40 1 1.1467 1.7368 7.1557 41 1 -0.4873 0.0039 7.8363 42 1 0.8974 0.0687 8.9470 43 1 0.1556 -2.0401 6.9333 44 1 0.7182 -2.2217 8.6115 45 1 2.6495 -2.8417 7.4713 46 1 2.9313 -1.0896 7.6164 47 1 3.0589 -0.4771 -1.5499 48 1 -0.0019 -0.6957 -2.1971 49 1 1.3805 -0.9654 -3.3880 50 1 2.2603 -2.8531 -1.9389 51 1 0.8780 -2.5833 -0.7481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269637309.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:41 Heat of formation + Delta-G solvation = 37.067663 kcal Electronic energy + Delta-G solvation = -32129.548293 eV Core-core repulsion = 28032.308888 eV Total energy + Delta-G solvation = -4097.239406 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -46.19601 -41.48100 -39.30657 -38.90451 -36.44034 -35.26922 -35.04494 -33.17669 -32.90174 -32.18431 -31.14886 -27.69105 -27.30974 -26.01912 -25.78338 -24.75080 -24.05179 -23.19282 -22.28059 -20.96944 -20.60990 -20.23700 -19.29936 -18.97625 -18.72744 -17.84096 -17.10295 -16.89308 -16.39174 -16.30337 -16.06087 -15.71289 -15.64814 -15.32345 -15.04435 -14.67417 -14.37585 -14.31331 -14.25266 -13.88216 -13.75736 -13.40480 -13.29274 -13.14395 -12.94588 -12.85949 -12.83921 -12.52950 -12.29603 -12.16116 -12.11910 -12.05024 -11.82482 -11.78309 -11.52374 -11.38930 -11.31404 -11.25130 -11.14473 -11.01653 -10.81769 -10.12489 -10.08761 -9.00598 -7.99258 -5.26693 0.03962 0.64122 1.40718 1.41859 1.52291 1.77500 1.99437 2.10726 2.51228 2.80680 3.00712 3.33363 3.46904 3.56096 3.65728 3.81454 3.87775 3.90424 3.94575 4.08149 4.09587 4.14537 4.18180 4.29123 4.37696 4.39832 4.43823 4.55330 4.71425 4.74906 4.80261 4.80675 4.82682 4.87777 4.90958 4.93946 4.96419 5.05170 5.06926 5.17286 5.20994 5.26240 5.27934 5.34716 5.37365 5.43059 5.43498 5.51431 5.53504 6.22325 6.36961 6.92970 7.07113 7.29300 8.03901 8.30611 9.24142 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008889 B = 0.003761 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.335510 B = 7442.664980 C = 9170.769683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.208 3.792 3 C 0.147 3.853 4 N -0.732 5.732 5 C -0.244 4.244 6 H 0.067 0.933 7 C -0.072 4.072 8 N -0.967 5.967 9 Si 0.971 3.029 10 H -0.269 1.269 11 H -0.294 1.294 12 H -0.288 1.288 13 N -0.690 5.690 14 C 0.598 3.402 15 O -0.539 6.539 16 C -0.045 4.045 17 N -0.352 5.352 18 O 0.128 5.872 19 C -0.023 4.023 20 C -0.163 4.163 21 C -0.042 4.042 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.112 4.112 25 C -0.038 4.038 26 C -0.179 4.179 27 C -0.152 4.152 28 C -0.161 4.161 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.027 0.973 33 H 0.020 0.980 34 H 0.374 0.626 35 H 0.251 0.749 36 H 0.404 0.596 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.056 0.944 44 H 0.106 0.894 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.086 0.914 48 H 0.116 0.884 49 H 0.103 0.897 50 H 0.103 0.897 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.858 -11.499 14.231 23.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.123 3.877 3 C 0.019 3.981 4 N -0.375 5.375 5 C -0.376 4.376 6 H 0.085 0.915 7 C -0.264 4.264 8 N -0.618 5.618 9 Si 0.800 3.200 10 H -0.194 1.194 11 H -0.221 1.221 12 H -0.215 1.215 13 N -0.340 5.340 14 C 0.382 3.618 15 O -0.416 6.416 16 C -0.202 4.202 17 N -0.053 5.053 18 O 0.053 5.947 19 C -0.087 4.087 20 C -0.169 4.169 21 C -0.080 4.080 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.150 4.150 25 C -0.075 4.075 26 C -0.198 4.198 27 C -0.190 4.190 28 C -0.198 4.198 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.207 0.793 35 H 0.059 0.941 36 H 0.239 0.761 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.124 0.876 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.104 0.896 48 H 0.135 0.865 49 H 0.121 0.879 50 H 0.121 0.879 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.807 -11.294 13.263 22.863 hybrid contribution 1.279 0.999 -0.266 1.644 sum -13.528 -10.296 12.998 21.400 Atomic orbital electron populations 1.22214 0.92221 1.03108 1.03714 1.20009 0.94674 0.90533 0.82440 1.21114 0.84256 0.94840 0.97886 1.42349 1.00844 1.05112 1.89170 1.19621 0.89711 0.87125 1.41101 0.91460 1.25498 0.97124 1.00097 1.03712 1.69824 1.06516 1.25786 1.59637 0.85099 0.78463 0.79566 0.76824 1.19384 1.22081 1.21495 1.45854 1.48300 1.35075 1.04754 1.17023 0.79779 0.83070 0.81889 1.90678 1.39849 1.25098 1.85952 1.23357 1.03015 0.96907 0.96970 1.74388 1.16491 1.13579 1.00828 1.84705 1.55373 1.44000 1.10646 1.24862 0.96161 0.90962 0.96724 1.20937 1.04945 1.01261 0.89721 1.19973 0.97651 0.93384 0.96973 1.21732 1.00860 1.01004 0.92404 1.21520 1.00699 0.93972 0.99297 1.21601 0.93539 0.97328 1.02498 1.20580 1.00535 1.06256 0.80140 1.22256 1.00029 1.00226 0.97292 1.23207 0.98982 1.01371 0.95403 1.23018 1.03519 0.90144 1.03075 0.91943 0.89521 0.90726 0.95537 0.96163 0.79306 0.94067 0.76075 0.92275 0.89541 0.91562 0.90681 0.91162 0.89595 0.92528 0.87551 0.86814 0.86922 0.89565 0.86549 0.87858 0.87872 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 6.98 71.98 0.50 -4.07 16 2 C 0.21 7.45 0.54 3.61 0.00 7.45 16 3 C 0.15 6.71 5.03 86.38 0.43 7.14 16 4 N -0.73 -40.01 5.04 -343.44 -1.73 -41.74 16 5 C -0.24 -14.63 9.99 84.03 0.84 -13.79 16 6 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 7 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 8 N -0.97 -61.37 13.06 21.65 0.28 -61.08 16 9 Si 0.97 48.57 29.55 68.60 2.03 50.59 16 10 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 12 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 13 N -0.69 -25.62 4.72 -425.29 -2.01 -27.63 16 14 C 0.60 23.57 7.26 86.93 0.63 24.20 16 15 O -0.54 -23.05 11.73 -3.72 -0.04 -23.09 16 16 C -0.05 -1.61 7.19 42.69 0.31 -1.30 16 17 N -0.35 -11.88 11.88 -49.02 -0.58 -12.46 16 18 O 0.13 3.59 11.18 74.99 0.84 4.43 16 19 C -0.02 -0.54 6.64 24.91 0.17 -0.37 16 20 C -0.16 -4.73 5.73 -20.02 -0.11 -4.84 16 21 C -0.04 -1.07 5.37 29.76 0.16 -0.91 16 22 C -0.12 -2.15 5.55 30.55 0.17 -1.98 16 23 C -0.12 -1.28 5.63 30.32 0.17 -1.11 16 24 C -0.11 -1.11 5.63 30.54 0.17 -0.94 16 25 C -0.04 -0.47 5.55 29.89 0.17 -0.30 16 26 C -0.18 -5.80 4.84 -10.79 -0.05 -5.85 16 27 C -0.15 -3.69 9.64 30.62 0.30 -3.39 16 28 C -0.16 -3.92 9.82 30.62 0.30 -3.62 16 29 H 0.06 2.10 6.03 -2.39 -0.01 2.09 16 30 H 0.09 2.23 6.78 -2.39 -0.02 2.21 16 31 H 0.07 1.88 6.99 -2.39 -0.02 1.86 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.02 1.04 6.32 -2.39 -0.02 1.02 16 34 H 0.37 21.39 6.62 -92.71 -0.61 20.78 16 35 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.40 14.71 8.26 -92.71 -0.77 13.94 16 37 H 0.06 1.90 7.07 -2.39 -0.02 1.88 16 38 H 0.09 1.98 7.83 -2.39 -0.02 1.96 16 39 H 0.07 1.20 5.69 -2.38 -0.01 1.19 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 42 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.06 0.73 7.79 -2.38 -0.02 0.71 16 44 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.11 1.21 6.38 -2.39 -0.02 1.20 16 47 H 0.09 3.47 7.09 -2.39 -0.02 3.45 16 48 H 0.12 2.44 5.88 -2.39 -0.01 2.42 16 49 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 50 H 0.10 2.33 8.14 -2.39 -0.02 2.32 16 51 H 0.10 2.30 7.35 -2.39 -0.02 2.28 16 Total: -1.00 -75.73 392.67 3.00 -72.73 By element: Atomic # 1 Polarization: 46.22 SS G_CDS: -0.40 Total: 45.82 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 4.62 Total: -7.57 kcal Atomic # 7 Polarization: -138.87 SS G_CDS: -4.04 Total: -142.91 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.80 Total: -18.66 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.59 kcal Total: -75.73 3.00 -72.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269637309.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.797 kcal (2) G-P(sol) polarization free energy of solvation -75.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds