Wall clock time and date at job start Wed Apr 1 2020 05:33:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53001 * 109.47373 * 2 1
4 4 N 1.46505 * 109.46791 * 299.99723 * 3 2 1
5 5 C 1.36935 * 119.99714 * 179.97438 * 4 3 2
6 6 H 1.08000 * 120.00000 * 0.02562 * 5 4 3
7 7 C 1.38810 * 120.00250 * 179.97438 * 5 4 3
8 8 N 1.31623 * 119.99700 * 0.02562 * 7 5 4
9 9 Si 1.86794 * 120.00554 * 180.02562 * 7 5 4
10 10 H 1.48507 * 109.46844 * 0.02562 * 9 7 5
11 11 H 1.48498 * 109.47230 * 119.99798 * 9 7 5
12 12 H 1.48499 * 109.47450 * 240.00007 * 9 7 5
13 13 N 1.46495 * 109.46966 * 239.99724 * 2 1 3
14 14 C 1.34781 * 120.00021 * 174.52095 * 13 2 1
15 15 O 1.21493 * 119.99603 * 5.20318 * 14 13 2
16 16 C 1.48334 * 120.00061 * 185.20326 * 14 13 2
17 17 N 1.31337 * 127.12752 * 359.68290 * 16 14 13
18 18 O 1.21254 * 111.48338 * 179.83039 * 17 16 14
19 19 C 1.33626 * 111.64453 * 0.09408 * 18 17 16
20 20 C 1.35016 * 106.59672 * 0.30250 * 19 18 17
21 21 C 1.50075 * 126.58874 * 178.63638 * 20 19 18
22 22 C 1.53326 * 108.97653 * 27.96626 * 21 20 19
23 23 C 1.52658 * 109.49535 * 271.45072 * 22 21 20
24 24 C 1.52626 * 110.91940 * 61.42172 * 23 22 21
25 25 C 1.50606 * 128.03810 * 180.54797 * 19 18 17
26 26 C 1.53003 * 109.46923 * 119.99802 * 2 1 3
27 27 C 1.52998 * 117.49926 * 122.32155 * 26 2 1
28 28 C 1.53005 * 117.49787 * 53.66565 * 26 2 1
29 29 H 1.08991 * 109.47587 * 180.02562 * 1 2 3
30 30 H 1.09007 * 109.46757 * 59.99813 * 1 2 3
31 31 H 1.09005 * 109.47361 * 300.00359 * 1 2 3
32 32 H 1.08996 * 109.47238 * 59.99761 * 3 2 1
33 33 H 1.08993 * 109.47087 * 179.97438 * 3 2 1
34 34 H 0.96996 * 120.00039 * 0.02562 * 4 3 2
35 35 H 0.97000 * 120.00419 * 179.97438 * 8 7 5
36 36 H 0.97004 * 120.00075 * 354.51599 * 13 2 1
37 37 H 1.09001 * 109.55205 * 147.81721 * 21 20 19
38 38 H 1.09003 * 109.54937 * 268.01854 * 21 20 19
39 39 H 1.08993 * 109.46823 * 31.46383 * 22 21 20
40 40 H 1.09001 * 109.46341 * 151.45677 * 22 21 20
41 41 H 1.08995 * 109.19125 * 181.79191 * 23 22 21
42 42 H 1.08995 * 109.19068 * 301.05216 * 23 22 21
43 43 H 1.09004 * 109.40380 * 153.77580 * 24 23 22
44 44 H 1.08998 * 109.40202 * 273.60832 * 24 23 22
45 45 H 1.09003 * 109.53766 * 106.80246 * 25 19 18
46 46 H 1.09004 * 109.59830 * 346.60603 * 25 19 18
47 47 H 1.08998 * 115.54946 * 267.99618 * 26 2 1
48 48 H 1.08998 * 117.49630 * 0.02562 * 27 26 2
49 49 H 1.09000 * 117.49739 * 145.02185 * 27 26 2
50 50 H 1.09004 * 117.49701 * 214.98354 * 28 26 2
51 51 H 1.09004 * 117.49399 * 0.02562 * 28 26 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 7 1.5518 2.1330 -1.1963
5 6 1.8822 3.4442 -1.4127
6 1 2.5031 3.9690 -0.7018
7 6 1.4201 4.0984 -2.5464
8 7 0.6638 3.4586 -3.4130
9 14 1.8714 5.8867 -2.8421
10 1 2.7251 6.3725 -1.7283
11 1 2.6145 6.0046 -4.1223
12 1 0.6339 6.7048 -2.9109
13 7 2.0183 -0.6906 -1.1961
14 6 3.3384 -0.7182 -1.4667
15 8 4.1311 -0.2533 -0.6720
16 6 3.8233 -1.3161 -2.7346
17 7 3.0962 -1.8598 -3.6837
18 8 3.7856 -2.2575 -4.5985
19 6 5.0828 -2.0288 -4.3737
20 6 5.1647 -1.4244 -3.1692
21 6 6.4198 -0.9951 -2.4673
22 6 7.4963 -0.6867 -3.5147
23 6 8.2709 -1.9613 -3.8397
24 6 7.3476 -3.0253 -4.4270
25 6 6.2513 -2.3589 -5.2646
26 6 2.0400 -0.7212 1.2493
27 6 2.9596 -1.9265 1.0433
28 6 1.5173 -2.1351 1.5116
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3634 0.5139 0.8900
32 1 1.6768 1.9563 0.8899
33 1 3.1300 1.4424 0.0005
34 1 0.9938 1.6617 -1.8345
35 1 0.3404 3.9158 -4.2051
36 1 1.3916 -1.1282 -1.7933
37 1 6.2197 -0.1016 -1.8758
38 1 6.7641 -1.7961 -1.8131
39 1 7.0235 -0.3078 -4.4208
40 1 8.1814 0.0642 -3.1212
41 1 9.0551 -1.7301 -4.5605
42 1 8.7263 -2.3463 -2.9274
43 1 7.9269 -3.6989 -5.0586
44 1 6.8886 -3.5931 -3.6177
45 1 6.6395 -1.4433 -5.7110
46 1 5.9296 -3.0404 -6.0522
47 1 2.2291 -0.0860 2.1146
48 1 3.2016 -2.2054 0.0178
49 1 3.7535 -2.0844 1.7733
50 1 1.3628 -2.4301 2.5496
51 1 0.8104 -2.5515 0.7939
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001269637311.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:33:46
Heat of formation + Delta-G solvation = 65.060283 kcal
Electronic energy + Delta-G solvation = -32604.001953 eV
Core-core repulsion = 28507.976398 eV
Total energy + Delta-G solvation = -4096.025554 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-44.96399 -40.29108 -38.31575 -37.16919 -34.96540 -33.99384 -33.32579 -31.98135
-31.66693 -30.87921 -29.49437 -26.38662 -26.04146 -24.96126 -24.45091 -23.58170
-22.08293 -21.36454 -21.17517 -20.16338 -19.89345 -18.89773 -17.78018 -17.54543
-17.21405 -16.47250 -15.94197 -15.53582 -15.37926 -14.98878 -14.45621 -14.38356
-13.99663 -13.71314 -13.62337 -13.46554 -13.37162 -13.26832 -12.85494 -12.56395
-12.14425 -12.11700 -12.08556 -11.92293 -11.79732 -11.34092 -11.31658 -11.08064
-11.05006 -10.86266 -10.77778 -10.76096 -10.74226 -10.56044 -10.23869 -10.07288
-9.99916 -9.89661 -9.64769 -9.41093 -9.04000 -8.77151 -8.61290 -6.81053
-5.70146 -2.96857 1.30038 1.81003 2.95990 3.22713 3.46498 3.52306
3.54617 3.58888 4.02168 4.16448 4.47747 4.56098 4.63304 4.65732
4.76736 4.86136 4.87939 4.97201 5.12420 5.14911 5.18387 5.20255
5.42568 5.45458 5.52816 5.54024 5.61373 5.64432 5.66572 5.73355
5.74418 5.77727 5.79557 5.86905 5.98388 6.00803 6.06007 6.07363
6.18214 6.18525 6.27824 6.31414 6.37608 6.39871 6.59150 6.65943
6.90136 7.12488 7.76997 7.79260 8.16422 8.48832 8.51523 9.60150
10.18344 10.53770 11.53018
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008315 B = 0.004338 C = 0.003322
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3366.648264 B = 6452.676920 C = 8426.459345
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.200 3.800
3 C 0.141 3.859
4 N -0.727 5.727
5 C -0.230 4.230
6 H 0.069 0.931
7 C -0.016 4.016
8 N -0.935 5.935
9 Si 0.904 3.096
10 H -0.281 1.281
11 H -0.293 1.293
12 H -0.292 1.292
13 N -0.700 5.700
14 C 0.610 3.390
15 O -0.506 6.506
16 C -0.013 4.013
17 N -0.333 5.333
18 O 0.121 5.879
19 C -0.044 4.044
20 C -0.144 4.144
21 C -0.046 4.046
22 C -0.126 4.126
23 C -0.122 4.122
24 C -0.115 4.115
25 C -0.037 4.037
26 C -0.143 4.143
27 C -0.158 4.158
28 C -0.185 4.185
29 H 0.053 0.947
30 H 0.075 0.925
31 H 0.073 0.927
32 H 0.025 0.975
33 H 0.050 0.950
34 H 0.382 0.618
35 H 0.253 0.747
36 H 0.401 0.599
37 H 0.094 0.906
38 H 0.079 0.921
39 H 0.070 0.930
40 H 0.071 0.929
41 H 0.064 0.936
42 H 0.066 0.934
43 H 0.075 0.925
44 H 0.068 0.932
45 H 0.099 0.901
46 H 0.087 0.913
47 H 0.110 0.890
48 H 0.088 0.912
49 H 0.087 0.913
50 H 0.089 0.911
51 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.038 -17.530 0.898 20.735
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.114 3.886
3 C 0.013 3.987
4 N -0.371 5.371
5 C -0.361 4.361
6 H 0.087 0.913
7 C -0.211 4.211
8 N -0.584 5.584
9 Si 0.736 3.264
10 H -0.206 1.206
11 H -0.221 1.221
12 H -0.220 1.220
13 N -0.351 5.351
14 C 0.393 3.607
15 O -0.379 6.379
16 C -0.172 4.172
17 N -0.035 5.035
18 O 0.047 5.953
19 C -0.107 4.107
20 C -0.148 4.148
21 C -0.083 4.083
22 C -0.164 4.164
23 C -0.159 4.159
24 C -0.153 4.153
25 C -0.075 4.075
26 C -0.162 4.162
27 C -0.195 4.195
28 C -0.222 4.222
29 H 0.072 0.928
30 H 0.093 0.907
31 H 0.092 0.908
32 H 0.043 0.957
33 H 0.068 0.932
34 H 0.216 0.784
35 H 0.062 0.938
36 H 0.235 0.765
37 H 0.113 0.887
38 H 0.097 0.903
39 H 0.089 0.911
40 H 0.090 0.910
41 H 0.082 0.918
42 H 0.084 0.916
43 H 0.094 0.906
44 H 0.087 0.913
45 H 0.117 0.883
46 H 0.106 0.894
47 H 0.128 0.872
48 H 0.107 0.893
49 H 0.106 0.894
50 H 0.107 0.893
51 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges 10.339 -17.160 1.424 20.084
hybrid contribution 0.224 0.965 -0.587 1.152
sum 10.564 -16.195 0.837 19.353
Atomic orbital electron populations
1.21987 0.92868 1.01490 1.04185 1.20148 0.93932 0.92596 0.81901
1.21100 0.98795 0.87649 0.91138 1.42286 1.61239 1.10529 1.23091
1.19266 1.25010 0.87550 1.04272 0.91282 1.24689 1.00823 0.98162
0.97471 1.69668 1.39776 1.35895 1.13102 0.86144 0.77483 0.85237
0.77562 1.20590 1.22051 1.21954 1.45845 1.06690 1.55740 1.26803
1.16543 0.82900 0.78438 0.82774 1.90745 1.55017 1.45487 1.46675
1.23352 0.91864 1.04252 0.97768 1.74402 1.18660 1.13055 0.97402
1.84737 1.15439 1.59130 1.35996 1.24036 0.86170 1.02837 0.97685
1.20640 0.95379 1.03224 0.95590 1.19984 0.88859 1.02721 0.96756
1.21750 0.97505 0.97559 0.99553 1.21554 0.97922 0.95342 1.01107
1.21578 0.96019 0.98111 0.99611 1.20231 0.88699 1.02665 0.95872
1.22536 1.04106 0.90271 0.99312 1.22899 0.92590 1.02063 1.01969
1.22997 0.97758 0.99931 1.01555 0.92796 0.90658 0.90778 0.95747
0.93185 0.78397 0.93761 0.76492 0.88721 0.90288 0.91141 0.91020
0.91769 0.91573 0.90598 0.91346 0.88251 0.89442 0.87210 0.89336
0.89432 0.89261 0.89212
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.32 8.18 37.16 0.30 -2.01 16
2 C 0.20 3.43 0.55 -131.82 -0.07 3.36 16
3 C 0.14 3.07 4.83 -4.04 -0.02 3.05 16
4 N -0.73 -18.95 5.18 -59.91 -0.31 -19.26 16
5 C -0.23 -6.68 9.99 -15.06 -0.15 -6.83 16
6 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16
7 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16
8 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16
9 Si 0.90 23.22 29.55 -169.99 -5.02 18.20 16
10 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16
11 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16
12 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16
13 N -0.70 -12.17 4.19 -48.39 -0.20 -12.37 16
14 C 0.61 11.35 5.11 -12.10 -0.06 11.29 16
15 O -0.51 -10.13 11.44 5.37 0.06 -10.06 16
16 C -0.01 -0.23 7.19 -82.71 -0.59 -0.83 16
17 N -0.33 -5.63 11.88 33.31 0.40 -5.24 16
18 O 0.12 1.78 11.18 18.16 0.20 1.98 16
19 C -0.04 -0.55 6.64 -35.50 -0.24 -0.79 16
20 C -0.14 -2.12 5.72 -104.86 -0.60 -2.72 16
21 C -0.05 -0.59 5.36 -28.02 -0.15 -0.74 16
22 C -0.13 -1.25 5.55 -26.74 -0.15 -1.40 16
23 C -0.12 -0.89 5.64 -27.10 -0.15 -1.04 16
24 C -0.12 -0.81 5.63 -26.81 -0.15 -0.96 16
25 C -0.04 -0.30 5.55 -27.82 -0.15 -0.46 16
26 C -0.14 -2.14 4.81 -90.62 -0.44 -2.57 16
27 C -0.16 -2.27 8.28 -26.70 -0.22 -2.49 16
28 C -0.19 -2.32 9.68 -26.69 -0.26 -2.58 16
29 H 0.05 0.71 6.92 -51.93 -0.36 0.35 16
30 H 0.07 1.37 6.86 -51.93 -0.36 1.01 16
31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16
32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
33 H 0.05 1.20 5.96 -51.93 -0.31 0.89 16
34 H 0.38 10.36 6.35 -40.82 -0.26 10.10 16
35 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16
36 H 0.40 6.61 8.26 -40.82 -0.34 6.27 16
37 H 0.09 1.47 7.09 -51.93 -0.37 1.10 16
38 H 0.08 0.92 7.83 -51.93 -0.41 0.51 16
39 H 0.07 0.74 5.68 -51.93 -0.30 0.44 16
40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
42 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16
43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
44 H 0.07 0.55 7.78 -51.93 -0.40 0.15 16
45 H 0.10 0.77 6.37 -51.93 -0.33 0.44 16
46 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16
47 H 0.11 1.62 8.06 -51.93 -0.42 1.20 16
48 H 0.09 1.40 5.12 -51.93 -0.27 1.13 16
49 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16
50 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16
51 H 0.09 1.09 7.21 -51.93 -0.37 0.72 16
LS Contribution 390.89 15.07 5.89 5.89
Total: -1.00 -33.36 390.89 -9.29 -42.65
By element:
Atomic # 1 Polarization: 22.56 SS G_CDS: -7.83 Total: 14.73 kcal
Atomic # 6 Polarization: -5.10 SS G_CDS: -3.20 Total: -8.30 kcal
Atomic # 7 Polarization: -65.70 SS G_CDS: 0.61 Total: -65.09 kcal
Atomic # 8 Polarization: -8.35 SS G_CDS: 0.26 Total: -8.08 kcal
Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -33.36 -9.29 -42.65 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001269637311.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.712 kcal
(2) G-P(sol) polarization free energy of solvation -33.360 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.353 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal
(6) G-S(sol) free energy of system = (1) + (5) 65.060 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds