Wall clock time and date at job start Wed Apr 1 2020 05:33:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53001 * 109.47373 * 2 1
4 4 N 1.46505 * 109.46791 * 299.99723 * 3 2 1
5 5 C 1.36935 * 119.99714 * 179.97438 * 4 3 2
6 6 H 1.08000 * 120.00000 * 0.02562 * 5 4 3
7 7 C 1.38810 * 120.00250 * 179.97438 * 5 4 3
8 8 N 1.31623 * 119.99700 * 0.02562 * 7 5 4
9 9 Si 1.86794 * 120.00554 * 180.02562 * 7 5 4
10 10 H 1.48507 * 109.46844 * 0.02562 * 9 7 5
11 11 H 1.48498 * 109.47230 * 119.99798 * 9 7 5
12 12 H 1.48499 * 109.47450 * 240.00007 * 9 7 5
13 13 N 1.46495 * 109.46966 * 239.99724 * 2 1 3
14 14 C 1.34781 * 120.00021 * 174.52095 * 13 2 1
15 15 O 1.21493 * 119.99603 * 5.20318 * 14 13 2
16 16 C 1.48334 * 120.00061 * 185.20326 * 14 13 2
17 17 N 1.31337 * 127.12752 * 359.68290 * 16 14 13
18 18 O 1.21254 * 111.48338 * 179.83039 * 17 16 14
19 19 C 1.33626 * 111.64453 * 0.09408 * 18 17 16
20 20 C 1.35016 * 106.59672 * 0.30250 * 19 18 17
21 21 C 1.50075 * 126.58874 * 178.63638 * 20 19 18
22 22 C 1.53326 * 108.97653 * 27.96626 * 21 20 19
23 23 C 1.52658 * 109.49535 * 271.45072 * 22 21 20
24 24 C 1.52626 * 110.91940 * 61.42172 * 23 22 21
25 25 C 1.50606 * 128.03810 * 180.54797 * 19 18 17
26 26 C 1.53003 * 109.46923 * 119.99802 * 2 1 3
27 27 C 1.52998 * 117.49926 * 122.32155 * 26 2 1
28 28 C 1.53005 * 117.49787 * 53.66565 * 26 2 1
29 29 H 1.08991 * 109.47587 * 180.02562 * 1 2 3
30 30 H 1.09007 * 109.46757 * 59.99813 * 1 2 3
31 31 H 1.09005 * 109.47361 * 300.00359 * 1 2 3
32 32 H 1.08996 * 109.47238 * 59.99761 * 3 2 1
33 33 H 1.08993 * 109.47087 * 179.97438 * 3 2 1
34 34 H 0.96996 * 120.00039 * 0.02562 * 4 3 2
35 35 H 0.97000 * 120.00419 * 179.97438 * 8 7 5
36 36 H 0.97004 * 120.00075 * 354.51599 * 13 2 1
37 37 H 1.09001 * 109.55205 * 147.81721 * 21 20 19
38 38 H 1.09003 * 109.54937 * 268.01854 * 21 20 19
39 39 H 1.08993 * 109.46823 * 31.46383 * 22 21 20
40 40 H 1.09001 * 109.46341 * 151.45677 * 22 21 20
41 41 H 1.08995 * 109.19125 * 181.79191 * 23 22 21
42 42 H 1.08995 * 109.19068 * 301.05216 * 23 22 21
43 43 H 1.09004 * 109.40380 * 153.77580 * 24 23 22
44 44 H 1.08998 * 109.40202 * 273.60832 * 24 23 22
45 45 H 1.09003 * 109.53766 * 106.80246 * 25 19 18
46 46 H 1.09004 * 109.59830 * 346.60603 * 25 19 18
47 47 H 1.08998 * 115.54946 * 267.99618 * 26 2 1
48 48 H 1.08998 * 117.49630 * 0.02562 * 27 26 2
49 49 H 1.09000 * 117.49739 * 145.02185 * 27 26 2
50 50 H 1.09004 * 117.49701 * 214.98354 * 28 26 2
51 51 H 1.09004 * 117.49399 * 0.02562 * 28 26 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 7 1.5518 2.1330 -1.1963
5 6 1.8822 3.4442 -1.4127
6 1 2.5031 3.9690 -0.7018
7 6 1.4201 4.0984 -2.5464
8 7 0.6638 3.4586 -3.4130
9 14 1.8714 5.8867 -2.8421
10 1 2.7251 6.3725 -1.7283
11 1 2.6145 6.0046 -4.1223
12 1 0.6339 6.7048 -2.9109
13 7 2.0183 -0.6906 -1.1961
14 6 3.3384 -0.7182 -1.4667
15 8 4.1311 -0.2533 -0.6720
16 6 3.8233 -1.3161 -2.7346
17 7 3.0962 -1.8598 -3.6837
18 8 3.7856 -2.2575 -4.5985
19 6 5.0828 -2.0288 -4.3737
20 6 5.1647 -1.4244 -3.1692
21 6 6.4198 -0.9951 -2.4673
22 6 7.4963 -0.6867 -3.5147
23 6 8.2709 -1.9613 -3.8397
24 6 7.3476 -3.0253 -4.4270
25 6 6.2513 -2.3589 -5.2646
26 6 2.0400 -0.7212 1.2493
27 6 2.9596 -1.9265 1.0433
28 6 1.5173 -2.1351 1.5116
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3634 0.5139 0.8900
32 1 1.6768 1.9563 0.8899
33 1 3.1300 1.4424 0.0005
34 1 0.9938 1.6617 -1.8345
35 1 0.3404 3.9158 -4.2051
36 1 1.3916 -1.1282 -1.7933
37 1 6.2197 -0.1016 -1.8758
38 1 6.7641 -1.7961 -1.8131
39 1 7.0235 -0.3078 -4.4208
40 1 8.1814 0.0642 -3.1212
41 1 9.0551 -1.7301 -4.5605
42 1 8.7263 -2.3463 -2.9274
43 1 7.9269 -3.6989 -5.0586
44 1 6.8886 -3.5931 -3.6177
45 1 6.6395 -1.4433 -5.7110
46 1 5.9296 -3.0404 -6.0522
47 1 2.2291 -0.0860 2.1146
48 1 3.2016 -2.2054 0.0178
49 1 3.7535 -2.0844 1.7733
50 1 1.3628 -2.4301 2.5496
51 1 0.8104 -2.5515 0.7939
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001269637311.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:33:45
Heat of formation + Delta-G solvation = 44.378738 kcal
Electronic energy + Delta-G solvation = -32604.898772 eV
Core-core repulsion = 28507.976398 eV
Total energy + Delta-G solvation = -4096.922374 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.21 seconds
Orbital eigenvalues (eV)
-46.17776 -41.69304 -39.17504 -38.49111 -36.65638 -35.26728 -34.90206 -33.28497
-32.89301 -32.15181 -31.15741 -27.76469 -27.30403 -25.93105 -25.78854 -25.29212
-23.18261 -22.98303 -22.36615 -21.36446 -20.61409 -20.32184 -19.34289 -18.98342
-18.61864 -17.71216 -17.32157 -16.99050 -16.46030 -16.33147 -15.77484 -15.74043
-15.40734 -15.15787 -15.06922 -14.66719 -14.58627 -14.36839 -14.25563 -13.67907
-13.59862 -13.40146 -13.37191 -13.05288 -12.92658 -12.86036 -12.83277 -12.48504
-12.35443 -12.16090 -12.13394 -12.05419 -11.83255 -11.79273 -11.58295 -11.43942
-11.33727 -11.22087 -11.16519 -10.99918 -10.64722 -10.09976 -10.06428 -8.99197
-7.98763 -5.26047 0.06539 0.65690 1.40862 1.41917 1.52298 1.80406
2.00691 2.20150 2.51107 2.83907 2.95884 3.34627 3.49542 3.58308
3.66233 3.88937 3.90916 3.92433 3.94425 4.09478 4.11136 4.14865
4.27663 4.30100 4.31266 4.39916 4.43325 4.49728 4.73140 4.74289
4.76305 4.82060 4.84656 4.87048 4.88778 4.93282 5.01564 5.06253
5.11729 5.18325 5.22105 5.26050 5.27121 5.27785 5.33882 5.42771
5.43308 5.51459 5.56878 6.23049 6.37938 6.95389 7.11509 7.29975
8.04542 8.31047 9.24644
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008315 B = 0.004338 C = 0.003322
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3366.648264 B = 6452.676920 C = 8426.459345
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.206 3.794
3 C 0.143 3.857
4 N -0.732 5.732
5 C -0.242 4.242
6 H 0.067 0.933
7 C -0.072 4.072
8 N -0.967 5.967
9 Si 0.970 3.030
10 H -0.270 1.270
11 H -0.294 1.294
12 H -0.288 1.288
13 N -0.696 5.696
14 C 0.605 3.395
15 O -0.529 6.529
16 C -0.046 4.046
17 N -0.353 5.353
18 O 0.126 5.874
19 C -0.025 4.025
20 C -0.165 4.165
21 C -0.041 4.041
22 C -0.123 4.123
23 C -0.117 4.117
24 C -0.111 4.111
25 C -0.038 4.038
26 C -0.158 4.158
27 C -0.166 4.166
28 C -0.152 4.152
29 H 0.084 0.916
30 H 0.046 0.954
31 H 0.082 0.918
32 H 0.027 0.973
33 H 0.026 0.974
34 H 0.374 0.626
35 H 0.250 0.750
36 H 0.404 0.596
37 H 0.057 0.943
38 H 0.087 0.913
39 H 0.064 0.936
40 H 0.074 0.926
41 H 0.085 0.915
42 H 0.071 0.929
43 H 0.107 0.893
44 H 0.056 0.944
45 H 0.111 0.889
46 H 0.113 0.887
47 H 0.111 0.889
48 H 0.071 0.929
49 H 0.093 0.907
50 H 0.115 0.885
51 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.207 -18.981 0.521 22.574
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C 0.120 3.880
3 C 0.015 3.985
4 N -0.376 5.376
5 C -0.373 4.373
6 H 0.085 0.915
7 C -0.264 4.264
8 N -0.618 5.618
9 Si 0.799 3.201
10 H -0.194 1.194
11 H -0.221 1.221
12 H -0.215 1.215
13 N -0.347 5.347
14 C 0.389 3.611
15 O -0.404 6.404
16 C -0.203 4.203
17 N -0.054 5.054
18 O 0.051 5.949
19 C -0.088 4.088
20 C -0.170 4.170
21 C -0.078 4.078
22 C -0.160 4.160
23 C -0.154 4.154
24 C -0.149 4.149
25 C -0.076 4.076
26 C -0.178 4.178
27 C -0.203 4.203
28 C -0.189 4.189
29 H 0.103 0.897
30 H 0.065 0.935
31 H 0.101 0.899
32 H 0.045 0.955
33 H 0.044 0.956
34 H 0.207 0.793
35 H 0.059 0.941
36 H 0.239 0.761
37 H 0.076 0.924
38 H 0.105 0.895
39 H 0.083 0.917
40 H 0.093 0.907
41 H 0.104 0.896
42 H 0.089 0.911
43 H 0.125 0.875
44 H 0.075 0.925
45 H 0.129 0.871
46 H 0.132 0.868
47 H 0.129 0.871
48 H 0.089 0.911
49 H 0.112 0.888
50 H 0.133 0.867
51 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 11.500 -18.622 1.086 21.913
hybrid contribution -0.088 1.389 -0.474 1.470
sum 11.412 -17.232 0.613 20.678
Atomic orbital electron populations
1.21928 0.91480 1.03180 1.03131 1.20045 0.94827 0.90047 0.83064
1.21145 0.97305 0.90571 0.89443 1.42382 1.61059 1.09928 1.24192
1.19593 1.24563 0.88906 1.04285 0.91531 1.25485 1.01202 1.02375
0.97366 1.69820 1.40988 1.37479 1.13486 0.85115 0.77287 0.80269
0.77384 1.19415 1.22137 1.21460 1.45850 1.06498 1.55407 1.26956
1.16794 0.83037 0.78117 0.83113 1.90717 1.55550 1.46594 1.47546
1.23468 0.93440 1.05604 0.97820 1.74371 1.19434 1.13815 0.97811
1.84694 1.16486 1.58511 1.35243 1.24858 0.86140 1.00546 0.97298
1.20948 0.94957 1.04339 0.96739 1.19957 0.89288 1.01218 0.97363
1.21753 0.96743 0.99381 0.98166 1.21538 0.98015 0.93823 1.02041
1.21603 0.95597 0.98130 0.99564 1.20575 0.87100 1.03994 0.95885
1.22424 1.05894 0.91304 0.98145 1.22855 0.94130 1.01992 1.01356
1.23087 0.96052 0.96646 1.03125 0.89694 0.93535 0.89894 0.95493
0.95586 0.79258 0.94080 0.76127 0.92392 0.89505 0.91713 0.90743
0.89601 0.91071 0.87485 0.92523 0.87088 0.86825 0.87054 0.91055
0.88847 0.86665 0.88450
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.34 8.18 71.98 0.59 -3.76 16
2 C 0.21 7.20 0.55 3.61 0.00 7.21 16
3 C 0.14 6.44 4.83 86.38 0.42 6.86 16
4 N -0.73 -39.63 5.18 -343.46 -1.78 -41.41 16
5 C -0.24 -14.41 9.99 84.03 0.84 -13.57 16
6 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16
7 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16
8 N -0.97 -61.21 13.06 21.65 0.28 -60.92 16
9 Si 0.97 48.42 29.55 68.60 2.03 50.45 16
10 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16
11 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16
12 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16
13 N -0.70 -25.18 4.19 -425.29 -1.78 -26.96 16
14 C 0.60 23.76 5.11 86.93 0.44 24.21 16
15 O -0.53 -22.53 11.44 -3.69 -0.04 -22.58 16
16 C -0.05 -1.68 7.19 42.69 0.31 -1.37 16
17 N -0.35 -12.31 11.88 -49.02 -0.58 -12.90 16
18 O 0.13 3.70 11.18 75.05 0.84 4.53 16
19 C -0.02 -0.61 6.64 24.91 0.17 -0.44 16
20 C -0.16 -4.99 5.72 -20.02 -0.11 -5.10 16
21 C -0.04 -1.08 5.36 29.76 0.16 -0.92 16
22 C -0.12 -2.34 5.55 30.59 0.17 -2.17 16
23 C -0.12 -1.39 5.64 30.36 0.17 -1.22 16
24 C -0.11 -1.22 5.63 30.54 0.17 -1.05 16
25 C -0.04 -0.52 5.55 29.89 0.17 -0.36 16
26 C -0.16 -4.67 4.81 -10.79 -0.05 -4.72 16
27 C -0.17 -4.72 8.28 30.62 0.25 -4.47 16
28 C -0.15 -3.47 9.68 30.62 0.30 -3.17 16
29 H 0.08 2.09 6.92 -2.39 -0.02 2.07 16
30 H 0.05 1.72 6.86 -2.38 -0.02 1.70 16
31 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16
32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16
33 H 0.03 1.32 5.96 -2.39 -0.01 1.30 16
34 H 0.37 21.18 6.35 -92.71 -0.59 20.60 16
35 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16
36 H 0.40 13.86 8.26 -92.71 -0.77 13.10 16
37 H 0.06 1.95 7.09 -2.39 -0.02 1.93 16
38 H 0.09 2.08 7.83 -2.39 -0.02 2.07 16
39 H 0.06 1.30 5.68 -2.39 -0.01 1.28 16
40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16
41 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16
42 H 0.07 0.81 8.09 -2.39 -0.02 0.80 16
43 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16
44 H 0.06 0.78 7.78 -2.39 -0.02 0.77 16
45 H 0.11 1.38 6.37 -2.39 -0.02 1.37 16
46 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16
47 H 0.11 3.24 8.06 -2.39 -0.02 3.22 16
48 H 0.07 2.30 5.12 -2.39 -0.01 2.29 16
49 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16
50 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16
51 H 0.10 2.10 7.21 -2.38 -0.02 2.08 16
Total: -1.00 -75.38 390.89 3.04 -72.34
By element:
Atomic # 1 Polarization: 45.74 SS G_CDS: -0.38 Total: 45.36 kcal
Atomic # 6 Polarization: -12.37 SS G_CDS: 4.45 Total: -7.92 kcal
Atomic # 7 Polarization: -138.33 SS G_CDS: -3.86 Total: -142.19 kcal
Atomic # 8 Polarization: -18.84 SS G_CDS: 0.80 Total: -18.04 kcal
Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.45 kcal
Total: -75.38 3.04 -72.34 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001269637311.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 116.717 kcal
(2) G-P(sol) polarization free energy of solvation -75.378 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.339 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.339 kcal
(6) G-S(sol) free energy of system = (1) + (5) 44.379 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.21 seconds