Wall clock time and date at job start Wed Apr 1 2020 04:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46955 * 32.32747 * 3 2 1 5 5 C 1.34777 * 120.00046 * 269.99753 * 4 3 2 6 6 O 1.21283 * 119.99779 * 180.02562 * 5 4 3 7 7 C 1.50699 * 120.00134 * 0.02562 * 5 4 3 8 8 C 1.52997 * 109.47253 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.29629 * 304.58170 * 8 7 5 10 10 C 1.52925 * 109.29995 * 184.99893 * 8 7 5 11 11 C 1.53345 * 108.67394 * 188.93657 * 10 8 7 12 12 C 1.53069 * 108.42587 * 67.52877 * 11 10 8 13 13 C 1.50173 * 109.89482 * 311.10020 * 12 11 10 14 14 O 1.21279 * 118.24987 * 197.55680 * 13 12 11 15 15 N 1.33356 * 123.50748 * 17.58318 * 13 12 11 16 16 C 1.46499 * 119.99836 * 90.00486 * 4 3 2 17 17 C 1.53045 * 109.45880 * 299.99179 * 16 4 3 18 18 C 1.53187 * 109.31247 * 181.38828 * 17 16 4 19 19 N 1.46928 * 108.77561 * 305.36845 * 18 17 16 20 20 C 1.36944 * 120.63064 * 233.58564 * 19 18 17 21 21 H 1.07997 * 119.99761 * 152.39401 * 20 19 18 22 22 C 1.38812 * 119.99895 * 332.39615 * 20 19 18 23 23 N 1.31617 * 119.99892 * 334.91868 * 22 20 19 24 24 Si 1.86803 * 119.99914 * 154.91309 * 22 20 19 25 25 H 1.48500 * 109.46767 * 60.00196 * 24 22 20 26 26 H 1.48500 * 109.47091 * 300.00472 * 24 22 20 27 27 H 1.48496 * 109.47123 * 180.02562 * 24 22 20 28 28 C 1.46924 * 118.73984 * 53.86313 * 19 18 17 29 29 C 1.53037 * 109.46145 * 60.06375 * 16 4 3 30 30 H 4.40635 * 5.51558 * 180.02562 * 4 1 2 31 31 H 1.08993 * 109.47138 * 272.32897 * 3 2 1 32 32 H 1.08994 * 109.47027 * 152.32443 * 3 2 1 33 33 H 1.09008 * 109.46915 * 300.00201 * 7 5 4 34 34 H 1.08994 * 109.47072 * 59.99348 * 7 5 4 35 35 H 1.09001 * 109.60142 * 308.68983 * 10 8 7 36 36 H 1.08997 * 109.60068 * 69.17668 * 10 8 7 37 37 H 1.08998 * 109.67242 * 187.26654 * 11 10 8 38 38 H 1.09005 * 109.67024 * 307.76308 * 11 10 8 39 39 H 1.08997 * 109.39881 * 71.23241 * 12 11 10 40 40 H 1.08997 * 109.40203 * 190.96800 * 12 11 10 41 41 H 0.96993 * 117.94821 * 177.77427 * 15 13 12 42 42 H 1.09005 * 109.44749 * 180.02562 * 16 4 3 43 43 H 1.09005 * 109.49524 * 61.43881 * 17 16 4 44 44 H 1.08996 * 109.49573 * 301.34136 * 17 16 4 45 45 H 1.08998 * 109.58845 * 185.58334 * 18 17 16 46 46 H 1.08997 * 109.58923 * 65.15578 * 18 17 16 47 47 H 0.96993 * 120.00313 * 354.25458 * 23 22 20 48 48 H 1.08991 * 109.59034 * 65.92417 * 28 19 18 49 49 H 1.09004 * 109.58245 * 186.35523 * 28 19 18 50 50 H 1.08999 * 109.49680 * 298.56491 * 29 16 4 51 51 H 1.08993 * 109.50044 * 58.63515 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1663 -0.7386 5 6 3.3600 -2.3272 -0.0921 6 8 3.7651 -3.2931 -0.7036 7 6 3.1084 -2.4252 1.3905 8 6 3.4400 -3.8391 1.8718 9 1 2.8677 -4.5612 1.2895 10 6 3.0662 -3.9709 3.3488 11 6 3.6055 -5.3067 3.8744 12 6 5.1347 -5.2412 3.8832 13 6 5.6322 -4.7356 2.5596 14 8 6.7961 -4.9226 2.2743 15 7 4.8628 -4.0916 1.6812 16 6 3.3790 -1.0712 -2.1800 17 6 2.0773 -0.7001 -2.8943 18 6 2.3285 -0.6356 -4.4040 19 7 3.4416 0.2889 -4.6592 20 6 3.2974 1.3287 -5.5386 21 1 3.8848 2.2264 -5.4143 22 6 2.3961 1.2289 -6.5896 23 7 2.0539 0.0454 -7.0529 24 14 1.6688 2.7742 -7.3462 25 1 2.7613 3.6206 -7.8896 26 1 0.9259 3.5317 -6.3072 27 1 0.7407 2.3988 -8.4430 28 6 4.7143 0.0729 -3.9576 29 6 4.4346 0.0038 -2.4485 30 1 -1.0498 -0.0003 -0.0004 31 1 3.0093 -0.0409 1.0267 32 1 3.0089 0.9109 -0.4773 33 1 3.7380 -1.7056 1.9142 34 1 2.0603 -2.2081 1.5963 35 1 3.5094 -3.1502 3.9128 36 1 1.9817 -3.9471 3.4550 37 1 3.2396 -5.4772 4.8869 38 1 3.2761 -6.1169 3.2238 39 1 5.4637 -4.5680 4.6748 40 1 5.5387 -6.2370 4.0655 41 1 5.2759 -3.7711 0.8642 42 1 3.7362 -2.0317 -2.5517 43 1 1.7328 0.2718 -2.5409 44 1 1.3190 -1.4542 -2.6835 45 1 1.4318 -0.2759 -4.9086 46 1 2.5855 -1.6280 -4.7745 47 1 2.4926 -0.7520 -6.7177 48 1 5.1619 -0.8628 -4.2923 49 1 5.3921 0.9003 -4.1675 50 1 4.0679 0.9690 -2.0993 51 1 5.3538 -0.2490 -1.9202 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270326541.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:18 Heat of formation + Delta-G solvation = -4.166919 kcal Electronic energy + Delta-G solvation = -31571.727672 eV Core-core repulsion = 27472.700201 eV Total energy + Delta-G solvation = -4099.027471 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.94396 -39.95074 -37.88388 -36.81923 -35.89330 -33.63406 -33.24436 -32.35080 -31.52212 -30.38544 -29.52926 -27.99136 -27.25717 -25.03929 -23.80036 -22.79468 -22.41011 -21.78707 -19.83247 -19.44597 -19.32315 -18.11763 -17.64594 -17.42577 -16.92030 -16.50972 -16.37046 -15.56797 -15.37065 -14.72216 -14.43335 -14.35321 -14.08238 -14.03633 -13.89315 -13.59946 -13.52539 -13.49560 -13.40768 -13.10880 -13.00515 -12.48328 -12.27897 -11.94447 -11.73257 -11.65866 -11.44363 -11.41336 -11.33614 -10.97457 -10.73833 -10.61748 -10.42441 -10.25869 -10.20623 -10.13455 -9.97584 -9.96512 -9.75102 -9.32301 -9.24077 -8.74311 -8.38786 -6.93216 -6.09586 -3.25955 2.30037 2.49263 2.51140 2.70300 3.10916 3.19958 3.47570 3.50108 3.68661 4.08545 4.12553 4.24506 4.26861 4.40484 4.55144 4.56989 4.69751 4.76646 4.93829 5.04845 5.07790 5.13556 5.16251 5.24506 5.28618 5.33629 5.42417 5.43887 5.44264 5.46595 5.52745 5.69290 5.76734 5.80447 5.89088 6.04393 6.11735 6.27514 6.36831 6.44808 6.62663 6.65744 6.68692 6.75271 7.00870 7.10726 7.22868 7.33330 7.48517 7.97199 8.01477 8.09949 8.54655 9.08226 9.81625 10.25780 11.19106 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019545 B = 0.002485 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.278374 B =11266.856660 C =12050.273380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.208 4.208 3 C 0.215 3.785 4 N -0.599 5.599 5 C 0.512 3.488 6 O -0.536 6.536 7 C -0.157 4.157 8 C 0.156 3.844 9 H 0.084 0.916 10 C -0.133 4.133 11 C -0.123 4.123 12 C -0.136 4.136 13 C 0.516 3.484 14 O -0.562 6.562 15 N -0.707 5.707 16 C 0.144 3.856 17 C -0.136 4.136 18 C 0.154 3.846 19 N -0.599 5.599 20 C -0.351 4.351 21 H 0.056 0.944 22 C -0.024 4.024 23 N -0.915 5.915 24 Si 1.064 2.936 25 H -0.292 1.292 26 H -0.294 1.294 27 H -0.285 1.285 28 C 0.150 3.850 29 C -0.139 4.139 30 H 0.217 0.783 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.407 0.593 42 H 0.098 0.902 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.083 0.917 46 H 0.018 0.982 47 H 0.269 0.731 48 H 0.019 0.981 49 H 0.060 0.940 50 H 0.062 0.938 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.395 -4.732 25.417 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.209 4.209 3 C 0.092 3.908 4 N -0.330 5.330 5 C 0.300 3.700 6 O -0.413 6.413 7 C -0.198 4.198 8 C 0.051 3.949 9 H 0.102 0.898 10 C -0.171 4.171 11 C -0.161 4.161 12 C -0.176 4.176 13 C 0.303 3.697 14 O -0.442 6.442 15 N -0.361 5.361 16 C 0.043 3.957 17 C -0.176 4.176 18 C 0.027 3.973 19 N -0.322 5.322 20 C -0.480 4.480 21 H 0.074 0.926 22 C -0.226 4.226 23 N -0.555 5.555 24 Si 0.893 3.107 25 H -0.219 1.219 26 H -0.221 1.221 27 H -0.211 1.211 28 C 0.023 3.977 29 C -0.179 4.179 30 H 0.233 0.767 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.128 0.872 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.245 0.755 42 H 0.116 0.884 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.101 0.899 46 H 0.036 0.964 47 H 0.080 0.920 48 H 0.037 0.963 49 H 0.078 0.922 50 H 0.080 0.920 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.731 -4.842 23.972 24.608 hybrid contribution 0.829 -0.181 0.824 1.183 sum -1.902 -5.023 24.796 25.371 Atomic orbital electron populations 1.24947 0.95924 0.98899 1.00105 1.23450 0.94818 1.01671 1.00977 1.18406 0.83959 0.90766 0.97653 1.48279 1.64327 1.10511 1.09875 1.20613 0.77270 0.82600 0.89470 1.90721 1.45881 1.35956 1.68754 1.22217 1.04931 0.98960 0.93663 1.20720 0.82360 0.95370 0.96493 0.89779 1.21964 1.02402 0.98578 0.94130 1.21654 0.94232 0.97734 1.02493 1.21653 0.96872 1.03878 0.95153 1.20187 0.85795 0.77476 0.86289 1.90768 1.17897 1.57772 1.77727 1.45700 1.09745 1.57681 1.22984 1.21240 0.96532 1.00846 0.77113 1.22407 0.95325 1.00683 0.99188 1.20929 0.93165 0.92680 0.90542 1.44169 1.06404 1.32773 1.48890 1.19959 1.27434 0.93734 1.06827 0.92573 1.25851 0.99772 1.03059 0.93927 1.70778 1.45356 0.98865 1.40483 0.83544 0.76482 0.74615 0.76021 1.21947 1.22102 1.21081 1.20940 0.89334 0.98636 0.88813 1.22459 0.97296 0.98148 1.00017 0.76665 0.88390 0.87434 0.88085 0.87230 0.90603 0.89478 0.90283 0.90883 0.88334 0.88254 0.75500 0.88427 0.91959 0.93093 0.89920 0.96408 0.91973 0.96272 0.92198 0.91962 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 19.25 29.55 0.57 -1.31 16 2 C -0.21 -2.32 11.92 -37.12 -0.44 -2.76 16 3 C 0.21 2.19 5.15 -6.83 -0.04 2.16 16 4 N -0.60 -7.75 2.37 -169.37 -0.40 -8.15 16 5 C 0.51 6.43 7.31 -10.99 -0.08 6.35 16 6 O -0.54 -8.70 13.82 5.55 0.08 -8.63 16 7 C -0.16 -1.23 3.91 -27.88 -0.11 -1.34 16 8 C 0.16 1.27 2.65 -68.37 -0.18 1.08 16 9 H 0.08 0.78 7.96 -51.93 -0.41 0.37 16 10 C -0.13 -0.66 5.30 -26.59 -0.14 -0.80 16 11 C -0.12 -0.63 6.03 -26.52 -0.16 -0.79 16 12 C -0.14 -0.98 6.03 -28.10 -0.17 -1.15 16 13 C 0.52 6.07 7.71 -11.87 -0.09 5.98 16 14 O -0.56 -9.30 17.78 5.56 0.10 -9.20 16 15 N -0.71 -7.78 5.00 -54.85 -0.27 -8.06 16 16 C 0.14 2.40 2.48 -67.89 -0.17 2.23 16 17 C -0.14 -2.53 4.73 -26.61 -0.13 -2.66 16 18 C 0.15 3.56 4.69 -3.71 -0.02 3.55 16 19 N -0.60 -14.70 2.85 -172.05 -0.49 -15.19 16 20 C -0.35 -9.62 9.49 -15.06 -0.14 -9.76 16 21 H 0.06 1.54 7.94 -52.49 -0.42 1.13 16 22 C -0.02 -0.67 4.68 -17.43 -0.08 -0.75 16 23 N -0.91 -27.28 12.40 55.49 0.69 -26.59 16 24 Si 1.06 24.94 29.99 -169.99 -5.10 19.84 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 C 0.15 3.10 6.54 -3.48 -0.02 3.08 16 29 C -0.14 -2.32 5.33 -26.38 -0.14 -2.46 16 30 H 0.22 1.59 7.80 -54.10 -0.42 1.17 16 31 H 0.10 0.66 6.44 -51.93 -0.33 0.33 16 32 H 0.11 1.14 6.46 -51.93 -0.34 0.81 16 33 H 0.10 0.62 7.40 -51.92 -0.38 0.24 16 34 H 0.11 0.68 7.95 -51.93 -0.41 0.27 16 35 H 0.08 0.32 8.11 -51.93 -0.42 -0.10 16 36 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.41 5.44 6.84 -40.82 -0.28 5.16 16 42 H 0.10 1.86 6.90 -51.93 -0.36 1.50 16 43 H 0.06 1.18 7.03 -51.93 -0.36 0.82 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.08 2.16 6.29 -51.93 -0.33 1.83 16 46 H 0.02 0.43 7.87 -51.93 -0.41 0.02 16 47 H 0.27 8.13 6.72 -40.82 -0.27 7.85 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 50 H 0.06 1.01 6.73 -51.93 -0.35 0.67 16 51 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 400.23 15.07 6.03 6.03 Total: -1.00 -35.21 400.23 -9.00 -44.21 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -8.09 Total: 5.07 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.54 Total: 0.66 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.48 Total: -57.99 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.18 Total: -17.82 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.10 Total: 19.84 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.21 -9.00 -44.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270326541.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.042 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds