Wall clock time and date at job start Wed Apr 1 2020 04:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46955 * 32.32747 * 3 2 1 5 5 C 1.34777 * 120.00046 * 269.99753 * 4 3 2 6 6 O 1.21283 * 119.99779 * 180.02562 * 5 4 3 7 7 C 1.50699 * 120.00134 * 0.02562 * 5 4 3 8 8 C 1.52997 * 109.47253 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.29629 * 304.58170 * 8 7 5 10 10 C 1.52925 * 109.29995 * 184.99893 * 8 7 5 11 11 C 1.53345 * 108.67394 * 188.93657 * 10 8 7 12 12 C 1.53069 * 108.42587 * 67.52877 * 11 10 8 13 13 C 1.50173 * 109.89482 * 311.10020 * 12 11 10 14 14 O 1.21279 * 118.24987 * 197.55680 * 13 12 11 15 15 N 1.33356 * 123.50748 * 17.58318 * 13 12 11 16 16 C 1.46499 * 119.99836 * 90.00486 * 4 3 2 17 17 C 1.53045 * 109.45880 * 299.99179 * 16 4 3 18 18 C 1.53187 * 109.31247 * 181.38828 * 17 16 4 19 19 N 1.46928 * 108.77561 * 305.36845 * 18 17 16 20 20 C 1.36944 * 120.63064 * 233.58564 * 19 18 17 21 21 H 1.07997 * 119.99761 * 152.39401 * 20 19 18 22 22 C 1.38812 * 119.99895 * 332.39615 * 20 19 18 23 23 N 1.31617 * 119.99892 * 334.91868 * 22 20 19 24 24 Si 1.86803 * 119.99914 * 154.91309 * 22 20 19 25 25 H 1.48500 * 109.46767 * 60.00196 * 24 22 20 26 26 H 1.48500 * 109.47091 * 300.00472 * 24 22 20 27 27 H 1.48496 * 109.47123 * 180.02562 * 24 22 20 28 28 C 1.46924 * 118.73984 * 53.86313 * 19 18 17 29 29 C 1.53037 * 109.46145 * 60.06375 * 16 4 3 30 30 H 4.40635 * 5.51558 * 180.02562 * 4 1 2 31 31 H 1.08993 * 109.47138 * 272.32897 * 3 2 1 32 32 H 1.08994 * 109.47027 * 152.32443 * 3 2 1 33 33 H 1.09008 * 109.46915 * 300.00201 * 7 5 4 34 34 H 1.08994 * 109.47072 * 59.99348 * 7 5 4 35 35 H 1.09001 * 109.60142 * 308.68983 * 10 8 7 36 36 H 1.08997 * 109.60068 * 69.17668 * 10 8 7 37 37 H 1.08998 * 109.67242 * 187.26654 * 11 10 8 38 38 H 1.09005 * 109.67024 * 307.76308 * 11 10 8 39 39 H 1.08997 * 109.39881 * 71.23241 * 12 11 10 40 40 H 1.08997 * 109.40203 * 190.96800 * 12 11 10 41 41 H 0.96993 * 117.94821 * 177.77427 * 15 13 12 42 42 H 1.09005 * 109.44749 * 180.02562 * 16 4 3 43 43 H 1.09005 * 109.49524 * 61.43881 * 17 16 4 44 44 H 1.08996 * 109.49573 * 301.34136 * 17 16 4 45 45 H 1.08998 * 109.58845 * 185.58334 * 18 17 16 46 46 H 1.08997 * 109.58923 * 65.15578 * 18 17 16 47 47 H 0.96993 * 120.00313 * 354.25458 * 23 22 20 48 48 H 1.08991 * 109.59034 * 65.92417 * 28 19 18 49 49 H 1.09004 * 109.58245 * 186.35523 * 28 19 18 50 50 H 1.08999 * 109.49680 * 298.56491 * 29 16 4 51 51 H 1.08993 * 109.50044 * 58.63515 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1663 -0.7386 5 6 3.3600 -2.3272 -0.0921 6 8 3.7651 -3.2931 -0.7036 7 6 3.1084 -2.4252 1.3905 8 6 3.4400 -3.8391 1.8718 9 1 2.8677 -4.5612 1.2895 10 6 3.0662 -3.9709 3.3488 11 6 3.6055 -5.3067 3.8744 12 6 5.1347 -5.2412 3.8832 13 6 5.6322 -4.7356 2.5596 14 8 6.7961 -4.9226 2.2743 15 7 4.8628 -4.0916 1.6812 16 6 3.3790 -1.0712 -2.1800 17 6 2.0773 -0.7001 -2.8943 18 6 2.3285 -0.6356 -4.4040 19 7 3.4416 0.2889 -4.6592 20 6 3.2974 1.3287 -5.5386 21 1 3.8848 2.2264 -5.4143 22 6 2.3961 1.2289 -6.5896 23 7 2.0539 0.0454 -7.0529 24 14 1.6688 2.7742 -7.3462 25 1 2.7613 3.6206 -7.8896 26 1 0.9259 3.5317 -6.3072 27 1 0.7407 2.3988 -8.4430 28 6 4.7143 0.0729 -3.9576 29 6 4.4346 0.0038 -2.4485 30 1 -1.0498 -0.0003 -0.0004 31 1 3.0093 -0.0409 1.0267 32 1 3.0089 0.9109 -0.4773 33 1 3.7380 -1.7056 1.9142 34 1 2.0603 -2.2081 1.5963 35 1 3.5094 -3.1502 3.9128 36 1 1.9817 -3.9471 3.4550 37 1 3.2396 -5.4772 4.8869 38 1 3.2761 -6.1169 3.2238 39 1 5.4637 -4.5680 4.6748 40 1 5.5387 -6.2370 4.0655 41 1 5.2759 -3.7711 0.8642 42 1 3.7362 -2.0317 -2.5517 43 1 1.7328 0.2718 -2.5409 44 1 1.3190 -1.4542 -2.6835 45 1 1.4318 -0.2759 -4.9086 46 1 2.5855 -1.6280 -4.7745 47 1 2.4926 -0.7520 -6.7177 48 1 5.1619 -0.8628 -4.2923 49 1 5.3921 0.9003 -4.1675 50 1 4.0679 0.9690 -2.0993 51 1 5.3538 -0.2490 -1.9202 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270326541.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:17 Heat of formation + Delta-G solvation = -27.388027 kcal Electronic energy + Delta-G solvation = -31572.734614 eV Core-core repulsion = 27472.700201 eV Total energy + Delta-G solvation = -4100.034414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.84476 -40.95462 -39.31825 -37.75952 -37.13785 -34.92332 -34.06750 -33.46327 -32.57278 -31.95715 -31.15360 -28.72093 -28.21472 -26.73111 -24.71629 -24.07397 -23.66225 -23.11950 -20.93332 -20.79760 -20.04416 -19.52207 -18.85912 -18.48739 -17.84477 -17.47590 -17.31018 -16.41882 -16.38777 -16.12993 -15.99497 -15.41983 -15.36775 -15.21468 -15.05103 -14.79451 -14.66132 -14.49152 -14.34708 -14.24233 -14.03848 -13.82114 -13.51895 -13.06892 -12.91027 -12.71668 -12.60359 -12.51798 -12.25497 -12.18284 -11.93945 -11.89855 -11.82687 -11.80194 -11.73888 -11.37345 -11.30571 -11.14965 -10.89232 -10.69754 -10.50249 -10.11348 -9.90417 -9.00190 -8.28671 -5.43862 1.37766 1.55705 1.57604 1.62576 1.65086 1.83850 1.92345 2.29299 2.34834 2.64219 3.18639 3.36817 3.47068 3.51023 3.57153 3.66609 3.73470 3.93066 3.94218 4.00094 4.12721 4.17058 4.21751 4.24360 4.27886 4.42819 4.47070 4.54055 4.62015 4.64159 4.68010 4.70863 4.86767 4.90548 4.92495 4.96640 4.98795 5.09420 5.09923 5.10839 5.11820 5.12036 5.34718 5.37062 5.42467 5.73887 5.81327 6.28532 6.34384 6.44421 6.71334 7.00110 7.03687 7.19916 7.73361 8.17997 8.96779 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019545 B = 0.002485 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.278374 B =11266.856660 C =12050.273380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.234 4.234 3 C 0.211 3.789 4 N -0.598 5.598 5 C 0.506 3.494 6 O -0.580 6.580 7 C -0.144 4.144 8 C 0.151 3.849 9 H 0.067 0.933 10 C -0.125 4.125 11 C -0.119 4.119 12 C -0.129 4.129 13 C 0.507 3.493 14 O -0.623 6.623 15 N -0.708 5.708 16 C 0.155 3.845 17 C -0.114 4.114 18 C 0.161 3.839 19 N -0.615 5.615 20 C -0.354 4.354 21 H 0.056 0.944 22 C -0.078 4.078 23 N -0.944 5.944 24 Si 1.115 2.885 25 H -0.275 1.275 26 H -0.276 1.276 27 H -0.294 1.294 28 C 0.144 3.856 29 C -0.122 4.122 30 H 0.238 0.762 31 H 0.141 0.859 32 H 0.105 0.895 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.390 0.610 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.049 0.951 46 H -0.006 1.006 47 H 0.251 0.749 48 H 0.007 0.993 49 H 0.060 0.940 50 H 0.074 0.926 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 -3.084 29.368 29.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.235 4.235 3 C 0.090 3.910 4 N -0.328 5.328 5 C 0.297 3.703 6 O -0.460 6.460 7 C -0.184 4.184 8 C 0.046 3.954 9 H 0.085 0.915 10 C -0.163 4.163 11 C -0.157 4.157 12 C -0.169 4.169 13 C 0.296 3.704 14 O -0.507 6.507 15 N -0.358 5.358 16 C 0.052 3.948 17 C -0.154 4.154 18 C 0.034 3.966 19 N -0.339 5.339 20 C -0.484 4.484 21 H 0.074 0.926 22 C -0.274 4.274 23 N -0.586 5.586 24 Si 0.939 3.061 25 H -0.201 1.201 26 H -0.202 1.202 27 H -0.220 1.220 28 C 0.018 3.982 29 C -0.161 4.161 30 H 0.255 0.745 31 H 0.159 0.841 32 H 0.123 0.877 33 H 0.147 0.853 34 H 0.156 0.844 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.118 0.882 41 H 0.226 0.774 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.012 0.988 47 H 0.061 0.939 48 H 0.025 0.975 49 H 0.079 0.921 50 H 0.093 0.907 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.112 -3.175 27.997 28.474 hybrid contribution 1.272 -0.747 -0.444 1.541 sum -2.840 -3.922 27.553 27.975 Atomic orbital electron populations 1.25661 0.96836 0.97900 0.99311 1.23746 0.95415 1.02553 1.01785 1.18721 0.83730 0.89136 0.99421 1.48180 1.64536 1.11972 1.08091 1.21532 0.75900 0.81485 0.91393 1.90715 1.47696 1.37496 1.70136 1.22264 1.07103 0.99418 0.89570 1.20955 0.80256 0.95179 0.98973 0.91493 1.22007 1.04099 0.98965 0.91221 1.21680 0.92241 0.97685 1.04067 1.21700 0.98614 1.04037 0.92533 1.21098 0.85039 0.76575 0.87659 1.90731 1.20573 1.60138 1.79223 1.45904 1.11007 1.56866 1.22040 1.20750 0.95054 0.99205 0.79839 1.22098 0.96634 1.00881 0.95743 1.20724 0.91472 0.90941 0.93426 1.44394 1.08071 1.32468 1.48989 1.20247 1.26943 0.94290 1.06875 0.92588 1.27269 1.00547 1.04836 0.94718 1.70907 1.46549 0.99105 1.42013 0.82860 0.76152 0.71624 0.75421 1.20061 1.20216 1.22029 1.21091 0.87828 0.97971 0.91324 1.22236 0.98370 0.98795 0.96743 0.74527 0.84122 0.87721 0.85329 0.84437 0.88882 0.86895 0.87297 0.91828 0.86250 0.88240 0.77429 0.91345 0.91646 0.92848 0.93228 0.98784 0.93867 0.97508 0.92103 0.90730 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 19.25 74.32 1.43 -1.74 16 2 C -0.23 -4.48 11.92 31.13 0.37 -4.11 16 3 C 0.21 3.59 5.15 84.57 0.44 4.02 16 4 N -0.60 -14.38 2.37 -808.16 -1.91 -16.29 16 5 C 0.51 11.96 7.31 87.66 0.64 12.60 16 6 O -0.58 -19.16 13.82 -3.04 -0.04 -19.21 16 7 C -0.14 -1.74 3.91 29.85 0.12 -1.62 16 8 C 0.15 2.09 2.65 45.11 0.12 2.21 16 9 H 0.07 1.17 7.96 -2.39 -0.02 1.15 16 10 C -0.13 -0.68 5.30 30.68 0.16 -0.52 16 11 C -0.12 -0.79 6.03 30.73 0.19 -0.60 16 12 C -0.13 -1.58 6.03 29.71 0.18 -1.40 16 13 C 0.51 11.77 7.71 87.71 0.68 12.45 16 14 O -0.62 -21.35 17.78 -3.03 -0.05 -21.40 16 15 N -0.71 -15.17 5.00 -446.63 -2.23 -17.40 16 16 C 0.16 5.14 2.48 45.02 0.11 5.25 16 17 C -0.11 -4.28 4.73 30.67 0.15 -4.13 16 18 C 0.16 7.83 4.69 86.36 0.41 8.24 16 19 N -0.61 -31.06 2.85 -698.26 -1.99 -33.05 16 20 C -0.35 -19.75 9.49 84.03 0.80 -18.95 16 21 H 0.06 3.08 7.94 -2.91 -0.02 3.06 16 22 C -0.08 -4.44 4.68 84.86 0.40 -4.04 16 23 N -0.94 -58.50 12.40 21.65 0.27 -58.23 16 24 Si 1.12 50.63 29.99 68.60 2.06 52.68 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 28 C 0.14 6.05 6.54 86.51 0.57 6.62 16 29 C -0.12 -3.95 5.33 30.82 0.16 -3.78 16 30 H 0.24 2.74 7.80 -4.43 -0.03 2.71 16 31 H 0.14 1.17 6.44 -2.39 -0.02 1.15 16 32 H 0.10 1.88 6.46 -2.39 -0.02 1.87 16 33 H 0.13 0.93 7.40 -2.38 -0.02 0.91 16 34 H 0.14 1.00 7.95 -2.39 -0.02 0.99 16 35 H 0.09 0.27 8.11 -2.39 -0.02 0.25 16 36 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.06 0.56 8.13 -2.38 -0.02 0.54 16 39 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.39 10.70 6.84 -92.71 -0.63 10.07 16 42 H 0.07 2.71 6.90 -2.38 -0.02 2.69 16 43 H 0.06 2.43 7.03 -2.38 -0.02 2.41 16 44 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.05 2.72 6.29 -2.39 -0.02 2.70 16 46 H -0.01 -0.30 7.87 -2.39 -0.02 -0.32 16 47 H 0.25 16.07 6.72 -92.71 -0.62 15.45 16 48 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.06 2.51 7.93 -2.38 -0.02 2.49 16 50 H 0.07 2.27 6.73 -2.39 -0.02 2.26 16 51 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -83.47 400.23 3.44 -80.03 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.44 Total: 22.40 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 6.91 Total: 10.48 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -5.87 Total: -124.98 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -0.10 Total: -40.61 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 2.06 Total: 52.68 kcal Total: -83.47 3.44 -80.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270326541.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.643 kcal (2) G-P(sol) polarization free energy of solvation -83.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds