Wall clock time and date at job start Wed Apr 1 2020 04:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47295 * 259.16654 * 3 2 1 5 5 C 1.34782 * 119.99916 * 90.00466 * 4 3 2 6 6 O 1.21280 * 120.00189 * 180.02562 * 5 4 3 7 7 C 1.50702 * 119.99854 * 359.97438 * 5 4 3 8 8 C 1.53001 * 109.46820 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.30260 * 54.58594 * 8 7 5 10 10 C 1.52925 * 109.12927 * 174.06958 * 8 7 5 11 11 C 1.53349 * 108.67054 * 170.95731 * 10 8 7 12 12 C 1.53066 * 108.42295 * 292.46430 * 11 10 8 13 13 C 1.50151 * 109.95093 * 48.69359 * 12 11 10 14 14 O 1.21280 * 118.23883 * 162.62484 * 13 12 11 15 15 N 1.33355 * 123.51958 * 342.90476 * 13 12 11 16 16 C 1.46499 * 120.00250 * 270.00268 * 4 3 2 17 17 C 1.53042 * 109.45912 * 60.06925 * 16 4 3 18 18 C 1.53191 * 109.31218 * 178.61572 * 17 16 4 19 19 N 1.46927 * 108.77971 * 54.63104 * 18 17 16 20 20 C 1.36926 * 120.63315 * 126.41053 * 19 18 17 21 21 H 1.07998 * 120.00483 * 207.66341 * 20 19 18 22 22 C 1.38814 * 119.99956 * 27.66162 * 20 19 18 23 23 N 1.31621 * 119.99943 * 17.37717 * 22 20 19 24 24 Si 1.86802 * 120.00188 * 197.37582 * 22 20 19 25 25 H 1.48502 * 109.47000 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46970 * 119.99819 * 24 22 20 27 27 H 1.48497 * 109.47137 * 240.00134 * 24 22 20 28 28 C 1.46934 * 118.73586 * 306.39419 * 19 18 17 29 29 C 1.53035 * 109.46018 * 299.99540 * 16 4 3 30 30 H 4.40638 * 5.51505 * 179.97438 * 4 1 2 31 31 H 1.09004 * 109.47147 * 139.16923 * 3 2 1 32 32 H 1.08999 * 109.47374 * 19.16895 * 3 2 1 33 33 H 1.08996 * 109.46970 * 60.00005 * 7 5 4 34 34 H 1.09001 * 109.47195 * 300.00096 * 7 5 4 35 35 H 1.08998 * 109.60237 * 290.70834 * 10 8 7 36 36 H 1.08997 * 109.60691 * 51.20039 * 10 8 7 37 37 H 1.08999 * 109.67595 * 52.20593 * 11 10 8 38 38 H 1.09005 * 109.67181 * 172.69993 * 11 10 8 39 39 H 1.09004 * 109.39892 * 169.03039 * 12 11 10 40 40 H 1.08997 * 109.40178 * 288.77318 * 12 11 10 41 41 H 0.97003 * 117.94744 * 181.94957 * 15 13 12 42 42 H 1.09010 * 109.46004 * 180.02562 * 16 4 3 43 43 H 1.09003 * 109.49530 * 298.56545 * 17 16 4 44 44 H 1.09001 * 109.49932 * 58.66091 * 17 16 4 45 45 H 1.09004 * 109.58799 * 294.84814 * 18 17 16 46 46 H 1.09001 * 109.58725 * 174.41783 * 18 17 16 47 47 H 0.97001 * 119.99931 * 179.97438 * 23 22 20 48 48 H 1.08994 * 109.58883 * 293.81419 * 28 19 18 49 49 H 1.09004 * 109.69773 * 173.45994 * 28 19 18 50 50 H 1.08996 * 109.50210 * 301.34197 * 29 16 4 51 51 H 1.09006 * 109.49634 * 61.40393 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.2605 1.3565 5 6 3.3594 -0.7665 2.1999 6 8 3.7631 -0.5514 3.3231 7 6 3.1084 -2.1819 1.7476 8 6 3.4398 -3.1477 2.8870 9 1 2.8784 -2.8619 3.7765 10 6 3.0437 -4.5657 2.4732 11 6 3.5826 -5.5505 3.5179 12 6 5.1111 -5.5538 3.4364 13 6 5.6273 -4.1438 3.4395 14 8 6.7976 -3.9618 3.7007 15 7 4.8669 -3.0806 3.1757 16 6 3.3777 1.6365 1.7964 17 6 2.0754 2.4361 1.7140 18 6 2.3260 3.8646 2.2073 19 7 3.4382 4.4418 1.4400 20 6 3.2927 5.6409 0.7951 21 1 3.8787 5.8545 -0.0865 22 6 2.3919 6.5820 1.2746 23 7 1.9352 6.4885 2.5054 24 14 1.8280 7.9812 0.1729 25 1 2.4831 7.8610 -1.1544 26 1 0.3540 7.9154 0.0045 27 1 2.1981 9.2790 0.7924 28 6 4.7096 3.7079 1.3782 29 6 4.4323 2.2811 0.8941 30 1 -1.0501 0.0002 0.0000 31 1 3.0089 0.7784 -0.6719 32 1 3.0097 -0.9698 -0.3374 33 1 3.7383 -2.4053 0.8866 34 1 2.0603 -2.2942 1.4699 35 1 1.9575 -4.6424 2.4245 36 1 3.4731 -4.7956 1.4982 37 1 3.2688 -5.2374 4.5137 38 1 3.2014 -6.5504 3.3105 39 1 5.5181 -6.0929 4.2919 40 1 5.4236 -6.0479 2.5165 41 1 5.2909 -2.2081 3.1718 42 1 3.7354 1.6306 2.8262 43 1 1.7302 2.4635 0.6804 44 1 1.3178 1.9631 2.3387 45 1 2.5838 3.8456 3.2662 46 1 1.4287 4.4654 2.0582 47 1 1.3060 7.1463 2.8406 48 1 5.1617 3.6761 2.3694 49 1 5.3870 4.2044 0.6833 50 1 5.3521 1.6978 0.9352 51 1 4.0651 2.3094 -0.1318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270326542.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:23 Heat of formation + Delta-G solvation = -1.794531 kcal Electronic energy + Delta-G solvation = -31518.351419 eV Core-core repulsion = 27419.426823 eV Total energy + Delta-G solvation = -4098.924597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.89325 -39.89423 -37.75972 -36.75990 -35.74600 -33.56438 -33.12407 -32.26923 -31.49508 -30.26510 -29.63849 -27.97512 -27.21983 -25.14831 -23.80712 -22.77691 -22.24409 -21.79001 -19.76504 -19.41221 -19.27945 -18.03280 -17.60346 -16.99704 -16.78099 -16.47339 -16.17669 -15.53496 -15.33916 -14.81161 -14.61366 -14.31850 -14.04774 -13.93442 -13.80607 -13.62783 -13.47842 -13.42470 -13.17270 -12.95134 -12.80443 -12.41947 -12.24637 -11.91360 -11.62514 -11.52957 -11.41753 -11.38433 -11.26387 -11.00343 -10.76479 -10.58172 -10.48544 -10.24012 -10.18458 -10.11818 -9.94662 -9.81356 -9.73792 -9.52077 -9.21291 -8.69286 -8.44720 -6.72191 -5.81723 -3.23943 2.35968 2.52103 2.57601 2.75034 3.13861 3.26028 3.34880 3.42763 3.44747 4.12612 4.16672 4.28224 4.30705 4.43072 4.46872 4.59653 4.73236 4.80756 4.98468 5.08395 5.11688 5.19469 5.24110 5.31745 5.36286 5.40354 5.46011 5.46929 5.49180 5.54472 5.57407 5.79221 5.79926 5.85234 6.03222 6.15351 6.26045 6.42854 6.52015 6.58926 6.69791 6.73421 6.79950 6.90964 7.25365 7.31184 7.38630 7.53289 7.62569 7.77112 8.07572 8.13428 8.41571 9.17852 9.81246 10.37784 11.26998 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019693 B = 0.002463 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.458864 B =11366.391269 C =12125.255684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.206 4.206 3 C 0.215 3.785 4 N -0.599 5.599 5 C 0.512 3.488 6 O -0.536 6.536 7 C -0.158 4.158 8 C 0.156 3.844 9 H 0.085 0.915 10 C -0.133 4.133 11 C -0.123 4.123 12 C -0.136 4.136 13 C 0.516 3.484 14 O -0.563 6.563 15 N -0.707 5.707 16 C 0.144 3.856 17 C -0.141 4.141 18 C 0.174 3.826 19 N -0.592 5.592 20 C -0.252 4.252 21 H 0.067 0.933 22 C 0.002 3.998 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.148 3.852 29 C -0.139 4.139 30 H 0.216 0.784 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.407 0.593 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.048 0.952 45 H 0.019 0.981 46 H 0.090 0.910 47 H 0.254 0.746 48 H 0.021 0.979 49 H 0.058 0.942 50 H 0.054 0.946 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.461 -24.910 -4.627 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.207 4.207 3 C 0.092 3.908 4 N -0.330 5.330 5 C 0.300 3.700 6 O -0.413 6.413 7 C -0.198 4.198 8 C 0.051 3.949 9 H 0.103 0.897 10 C -0.171 4.171 11 C -0.161 4.161 12 C -0.175 4.175 13 C 0.303 3.697 14 O -0.442 6.442 15 N -0.360 5.360 16 C 0.042 3.958 17 C -0.181 4.181 18 C 0.047 3.953 19 N -0.315 5.315 20 C -0.382 4.382 21 H 0.084 0.916 22 C -0.197 4.197 23 N -0.546 5.546 24 Si 0.731 3.269 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.021 3.979 29 C -0.179 4.179 30 H 0.233 0.767 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.245 0.755 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.038 0.962 46 H 0.109 0.891 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.815 -24.772 -3.799 25.127 hybrid contribution -0.713 1.208 -0.688 1.563 sum -2.528 -23.564 -4.487 24.120 Atomic orbital electron populations 1.24934 0.95915 1.00700 0.98543 1.23463 0.94830 1.00720 1.01713 1.18400 0.83928 1.03272 0.85186 1.48310 1.64256 1.07634 1.12788 1.20597 0.77340 0.86904 0.85190 1.90723 1.45920 1.85299 1.19361 1.22227 1.04891 0.92422 1.00282 1.20722 0.82176 0.94568 0.97482 0.89691 1.21971 1.02317 0.93067 0.99746 1.21654 0.94227 1.00205 1.00027 1.21647 0.96791 0.93841 1.05270 1.20176 0.85981 0.87579 0.76001 1.90768 1.17452 1.86504 1.49470 1.45682 1.09420 1.10491 1.70446 1.21284 0.96770 0.77809 0.99923 1.22534 0.95049 0.99118 1.01404 1.20768 0.93390 0.88286 0.92829 1.44098 1.06870 1.20783 1.59699 1.19211 1.22161 0.91730 1.05080 0.91575 1.25049 1.01819 0.97408 0.95394 1.70045 1.34349 1.36640 1.13559 0.86242 0.78377 0.82058 0.80214 1.20258 1.21591 1.21699 1.20853 0.89560 0.89541 0.97986 1.22394 0.97275 0.98871 0.99373 0.76726 0.87423 0.88488 0.88134 0.87273 0.89492 0.90623 0.90879 0.90312 0.88244 0.88384 0.75521 0.88403 0.92341 0.93315 0.96249 0.89148 0.93639 0.96158 0.92380 0.92725 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 19.25 29.55 0.57 -1.35 16 2 C -0.21 -2.32 11.92 -37.13 -0.44 -2.76 16 3 C 0.21 2.21 5.15 -6.83 -0.04 2.17 16 4 N -0.60 -7.84 2.37 -169.37 -0.40 -8.24 16 5 C 0.51 6.51 7.32 -10.98 -0.08 6.43 16 6 O -0.54 -8.81 13.88 5.56 0.08 -8.73 16 7 C -0.16 -1.26 3.89 -27.88 -0.11 -1.36 16 8 C 0.16 1.28 2.65 -68.37 -0.18 1.10 16 9 H 0.09 0.80 7.93 -51.93 -0.41 0.39 16 10 C -0.13 -0.67 5.29 -26.59 -0.14 -0.81 16 11 C -0.12 -0.64 6.04 -26.52 -0.16 -0.80 16 12 C -0.14 -0.98 6.03 -28.11 -0.17 -1.15 16 13 C 0.52 6.09 7.71 -11.88 -0.09 6.00 16 14 O -0.56 -9.31 17.78 5.56 0.10 -9.21 16 15 N -0.71 -7.81 5.01 -54.86 -0.27 -8.08 16 16 C 0.14 2.41 2.48 -67.89 -0.17 2.24 16 17 C -0.14 -2.66 4.73 -26.61 -0.13 -2.78 16 18 C 0.17 4.11 5.31 -3.71 -0.02 4.09 16 19 N -0.59 -14.54 2.99 -172.31 -0.52 -15.05 16 20 C -0.25 -6.80 9.59 -15.06 -0.14 -6.95 16 21 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 22 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 23 N -0.90 -26.05 11.19 55.49 0.62 -25.43 16 24 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 C 0.15 3.04 6.51 -3.70 -0.02 3.02 16 29 C -0.14 -2.31 5.31 -26.61 -0.14 -2.45 16 30 H 0.22 1.61 7.80 -54.09 -0.42 1.19 16 31 H 0.11 1.14 6.45 -51.93 -0.34 0.81 16 32 H 0.10 0.66 6.44 -51.93 -0.33 0.33 16 33 H 0.10 0.63 7.40 -51.93 -0.38 0.25 16 34 H 0.11 0.70 7.95 -51.93 -0.41 0.28 16 35 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 37 H 0.07 0.42 8.13 -51.93 -0.42 -0.01 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.41 5.44 6.94 -40.82 -0.28 5.16 16 42 H 0.10 1.89 6.90 -51.92 -0.36 1.53 16 43 H 0.06 1.11 7.02 -51.93 -0.36 0.75 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 50 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.06 0.98 6.72 -51.93 -0.35 0.63 16 LS Contribution 401.33 15.07 6.05 6.05 Total: -1.00 -34.48 401.33 -9.08 -43.56 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -8.16 Total: 4.12 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -1.55 Total: 4.60 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.57 Total: -56.80 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.18 Total: -17.94 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.48 -9.08 -43.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270326542.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.766 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds