Wall clock time and date at job start Wed Apr 1 2020 04:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47295 * 259.16654 * 3 2 1 5 5 C 1.34782 * 119.99916 * 90.00466 * 4 3 2 6 6 O 1.21280 * 120.00189 * 180.02562 * 5 4 3 7 7 C 1.50702 * 119.99854 * 359.97438 * 5 4 3 8 8 C 1.53001 * 109.46820 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.30260 * 54.58594 * 8 7 5 10 10 C 1.52925 * 109.12927 * 174.06958 * 8 7 5 11 11 C 1.53349 * 108.67054 * 170.95731 * 10 8 7 12 12 C 1.53066 * 108.42295 * 292.46430 * 11 10 8 13 13 C 1.50151 * 109.95093 * 48.69359 * 12 11 10 14 14 O 1.21280 * 118.23883 * 162.62484 * 13 12 11 15 15 N 1.33355 * 123.51958 * 342.90476 * 13 12 11 16 16 C 1.46499 * 120.00250 * 270.00268 * 4 3 2 17 17 C 1.53042 * 109.45912 * 60.06925 * 16 4 3 18 18 C 1.53191 * 109.31218 * 178.61572 * 17 16 4 19 19 N 1.46927 * 108.77971 * 54.63104 * 18 17 16 20 20 C 1.36926 * 120.63315 * 126.41053 * 19 18 17 21 21 H 1.07998 * 120.00483 * 207.66341 * 20 19 18 22 22 C 1.38814 * 119.99956 * 27.66162 * 20 19 18 23 23 N 1.31621 * 119.99943 * 17.37717 * 22 20 19 24 24 Si 1.86802 * 120.00188 * 197.37582 * 22 20 19 25 25 H 1.48502 * 109.47000 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46970 * 119.99819 * 24 22 20 27 27 H 1.48497 * 109.47137 * 240.00134 * 24 22 20 28 28 C 1.46934 * 118.73586 * 306.39419 * 19 18 17 29 29 C 1.53035 * 109.46018 * 299.99540 * 16 4 3 30 30 H 4.40638 * 5.51505 * 179.97438 * 4 1 2 31 31 H 1.09004 * 109.47147 * 139.16923 * 3 2 1 32 32 H 1.08999 * 109.47374 * 19.16895 * 3 2 1 33 33 H 1.08996 * 109.46970 * 60.00005 * 7 5 4 34 34 H 1.09001 * 109.47195 * 300.00096 * 7 5 4 35 35 H 1.08998 * 109.60237 * 290.70834 * 10 8 7 36 36 H 1.08997 * 109.60691 * 51.20039 * 10 8 7 37 37 H 1.08999 * 109.67595 * 52.20593 * 11 10 8 38 38 H 1.09005 * 109.67181 * 172.69993 * 11 10 8 39 39 H 1.09004 * 109.39892 * 169.03039 * 12 11 10 40 40 H 1.08997 * 109.40178 * 288.77318 * 12 11 10 41 41 H 0.97003 * 117.94744 * 181.94957 * 15 13 12 42 42 H 1.09010 * 109.46004 * 180.02562 * 16 4 3 43 43 H 1.09003 * 109.49530 * 298.56545 * 17 16 4 44 44 H 1.09001 * 109.49932 * 58.66091 * 17 16 4 45 45 H 1.09004 * 109.58799 * 294.84814 * 18 17 16 46 46 H 1.09001 * 109.58725 * 174.41783 * 18 17 16 47 47 H 0.97001 * 119.99931 * 179.97438 * 23 22 20 48 48 H 1.08994 * 109.58883 * 293.81419 * 28 19 18 49 49 H 1.09004 * 109.69773 * 173.45994 * 28 19 18 50 50 H 1.08996 * 109.50210 * 301.34197 * 29 16 4 51 51 H 1.09006 * 109.49634 * 61.40393 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.2605 1.3565 5 6 3.3594 -0.7665 2.1999 6 8 3.7631 -0.5514 3.3231 7 6 3.1084 -2.1819 1.7476 8 6 3.4398 -3.1477 2.8870 9 1 2.8784 -2.8619 3.7765 10 6 3.0437 -4.5657 2.4732 11 6 3.5826 -5.5505 3.5179 12 6 5.1111 -5.5538 3.4364 13 6 5.6273 -4.1438 3.4395 14 8 6.7976 -3.9618 3.7007 15 7 4.8669 -3.0806 3.1757 16 6 3.3777 1.6365 1.7964 17 6 2.0754 2.4361 1.7140 18 6 2.3260 3.8646 2.2073 19 7 3.4382 4.4418 1.4400 20 6 3.2927 5.6409 0.7951 21 1 3.8787 5.8545 -0.0865 22 6 2.3919 6.5820 1.2746 23 7 1.9352 6.4885 2.5054 24 14 1.8280 7.9812 0.1729 25 1 2.4831 7.8610 -1.1544 26 1 0.3540 7.9154 0.0045 27 1 2.1981 9.2790 0.7924 28 6 4.7096 3.7079 1.3782 29 6 4.4323 2.2811 0.8941 30 1 -1.0501 0.0002 0.0000 31 1 3.0089 0.7784 -0.6719 32 1 3.0097 -0.9698 -0.3374 33 1 3.7383 -2.4053 0.8866 34 1 2.0603 -2.2942 1.4699 35 1 1.9575 -4.6424 2.4245 36 1 3.4731 -4.7956 1.4982 37 1 3.2688 -5.2374 4.5137 38 1 3.2014 -6.5504 3.3105 39 1 5.5181 -6.0929 4.2919 40 1 5.4236 -6.0479 2.5165 41 1 5.2909 -2.2081 3.1718 42 1 3.7354 1.6306 2.8262 43 1 1.7302 2.4635 0.6804 44 1 1.3178 1.9631 2.3387 45 1 2.5838 3.8456 3.2662 46 1 1.4287 4.4654 2.0582 47 1 1.3060 7.1463 2.8406 48 1 5.1617 3.6761 2.3694 49 1 5.3870 4.2044 0.6833 50 1 5.3521 1.6978 0.9352 51 1 4.0651 2.3094 -0.1318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270326542.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:22 Heat of formation + Delta-G solvation = -24.408530 kcal Electronic energy + Delta-G solvation = -31519.332036 eV Core-core repulsion = 27419.426823 eV Total energy + Delta-G solvation = -4099.905213 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.79301 -40.90557 -39.15936 -37.69938 -37.00588 -34.75084 -34.04217 -33.43036 -32.55995 -31.82727 -31.26526 -28.71494 -28.18683 -26.81993 -24.70780 -23.91782 -23.64937 -23.09544 -20.87395 -20.73950 -20.01749 -19.02869 -18.66368 -18.43248 -17.79563 -17.36459 -17.26395 -16.83365 -16.35228 -16.20676 -15.70087 -15.44496 -15.30581 -15.02599 -14.86742 -14.74178 -14.47336 -14.43579 -14.29404 -14.19389 -14.08274 -13.76411 -13.23432 -13.07679 -12.99989 -12.69162 -12.58460 -12.57785 -12.26155 -12.20878 -11.99991 -11.95983 -11.87708 -11.78727 -11.56667 -11.39299 -11.29786 -11.10339 -10.85200 -10.65624 -10.60034 -10.09123 -9.82229 -8.74800 -7.89981 -5.35731 1.42532 1.45881 1.47116 1.57991 1.61353 1.65067 1.96124 2.33778 2.37860 2.49657 3.25933 3.41851 3.54734 3.59602 3.63192 3.68836 3.82966 3.96395 4.04044 4.05101 4.17398 4.23355 4.27782 4.31922 4.43387 4.51851 4.56855 4.62480 4.66902 4.72091 4.76466 4.82977 4.92302 5.00251 5.01048 5.03817 5.08651 5.11860 5.13590 5.15927 5.26465 5.38955 5.42334 5.51575 5.61284 5.66112 5.76120 6.34553 6.36051 6.46931 6.75121 7.09461 7.10976 7.22118 7.81228 8.34150 9.17349 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019693 B = 0.002463 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.458864 B =11366.391269 C =12125.255684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.232 4.232 3 C 0.211 3.789 4 N -0.598 5.598 5 C 0.505 3.495 6 O -0.581 6.581 7 C -0.144 4.144 8 C 0.151 3.849 9 H 0.067 0.933 10 C -0.126 4.126 11 C -0.119 4.119 12 C -0.129 4.129 13 C 0.507 3.493 14 O -0.623 6.623 15 N -0.708 5.708 16 C 0.154 3.846 17 C -0.118 4.118 18 C 0.182 3.818 19 N -0.608 5.608 20 C -0.260 4.260 21 H 0.072 0.928 22 C -0.053 4.053 23 N -0.938 5.938 24 Si 0.968 3.032 25 H -0.263 1.263 26 H -0.290 1.290 27 H -0.295 1.295 28 C 0.142 3.858 29 C -0.122 4.122 30 H 0.237 0.763 31 H 0.107 0.893 32 H 0.140 0.860 33 H 0.128 0.872 34 H 0.137 0.863 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.390 0.610 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.048 0.952 45 H -0.014 1.014 46 H 0.058 0.942 47 H 0.250 0.750 48 H 0.005 0.995 49 H 0.064 0.936 50 H 0.076 0.924 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.643 -27.890 -7.621 29.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.233 4.233 3 C 0.090 3.910 4 N -0.328 5.328 5 C 0.296 3.704 6 O -0.461 6.461 7 C -0.184 4.184 8 C 0.046 3.954 9 H 0.085 0.915 10 C -0.163 4.163 11 C -0.157 4.157 12 C -0.169 4.169 13 C 0.297 3.703 14 O -0.506 6.506 15 N -0.357 5.357 16 C 0.051 3.949 17 C -0.158 4.158 18 C 0.055 3.945 19 N -0.331 5.331 20 C -0.390 4.390 21 H 0.090 0.910 22 C -0.249 4.249 23 N -0.584 5.584 24 Si 0.796 3.204 25 H -0.187 1.187 26 H -0.216 1.216 27 H -0.222 1.222 28 C 0.016 3.984 29 C -0.162 4.162 30 H 0.254 0.746 31 H 0.124 0.876 32 H 0.158 0.842 33 H 0.146 0.854 34 H 0.155 0.845 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.137 0.863 41 H 0.226 0.774 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.004 0.996 46 H 0.076 0.924 47 H 0.059 0.941 48 H 0.023 0.977 49 H 0.083 0.917 50 H 0.095 0.905 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.032 -27.801 -6.842 28.790 hybrid contribution -0.334 2.163 0.313 2.211 sum -3.365 -25.637 -6.529 26.669 Atomic orbital electron populations 1.25646 0.96834 1.00024 0.97486 1.23768 0.95438 1.01465 1.02605 1.18725 0.83666 1.05553 0.83081 1.48203 1.64461 1.05851 1.14275 1.21516 0.75970 0.88553 0.84368 1.90717 1.47762 1.86118 1.21507 1.22269 1.07045 0.88297 1.00769 1.20947 0.80128 0.97143 0.97147 0.91475 1.22012 1.03952 0.90110 1.00245 1.21678 0.92292 1.01923 0.99779 1.21693 0.98456 0.90395 1.06337 1.21081 0.85247 0.89379 0.74634 1.90731 1.20113 1.87520 1.52280 1.45882 1.10660 1.09628 1.69571 1.20787 0.95326 0.80210 0.98607 1.22189 0.96329 0.96137 1.01097 1.20508 0.91948 0.90771 0.91245 1.44340 1.08420 1.20810 1.59535 1.19576 1.21800 0.92428 1.05159 0.91021 1.25850 1.02354 1.00102 0.96548 1.70214 1.35198 1.37672 1.15366 0.85192 0.77635 0.78626 0.78913 1.18696 1.21635 1.22181 1.21011 0.88079 0.91762 0.97558 1.22177 0.98264 0.96128 0.99623 0.74611 0.87561 0.84218 0.85366 0.84508 0.86954 0.88877 0.91841 0.87325 0.88206 0.86294 0.77430 0.91552 0.91809 0.93342 0.99597 0.92357 0.94139 0.97699 0.91740 0.90515 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 19.25 74.32 1.43 -1.85 16 2 C -0.23 -4.50 11.92 31.12 0.37 -4.13 16 3 C 0.21 3.61 5.15 84.57 0.44 4.05 16 4 N -0.60 -14.59 2.37 -808.16 -1.91 -16.51 16 5 C 0.51 12.15 7.32 87.66 0.64 12.79 16 6 O -0.58 -19.49 13.88 -3.03 -0.04 -19.53 16 7 C -0.14 -1.79 3.89 29.85 0.12 -1.68 16 8 C 0.15 2.14 2.65 45.11 0.12 2.25 16 9 H 0.07 1.20 7.93 -2.39 -0.02 1.19 16 10 C -0.13 -0.72 5.29 30.69 0.16 -0.55 16 11 C -0.12 -0.81 6.04 30.73 0.19 -0.62 16 12 C -0.13 -1.60 6.03 29.70 0.18 -1.42 16 13 C 0.51 11.81 7.71 87.71 0.68 12.49 16 14 O -0.62 -21.33 17.78 -3.03 -0.05 -21.38 16 15 N -0.71 -15.24 5.01 -446.66 -2.24 -17.48 16 16 C 0.15 5.17 2.48 45.02 0.11 5.28 16 17 C -0.12 -4.49 4.73 30.67 0.15 -4.35 16 18 C 0.18 9.03 5.31 86.36 0.46 9.49 16 19 N -0.61 -30.63 2.99 -699.08 -2.09 -32.73 16 20 C -0.26 -14.17 9.59 84.04 0.81 -13.37 16 21 H 0.07 3.77 7.89 -2.91 -0.02 3.74 16 22 C -0.05 -2.99 4.91 84.86 0.42 -2.58 16 23 N -0.94 -56.34 11.19 21.65 0.24 -56.10 16 24 Si 0.97 44.65 29.59 68.60 2.03 46.68 16 25 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 26 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 28 C 0.14 5.92 6.51 86.36 0.56 6.48 16 29 C -0.12 -3.94 5.31 30.67 0.16 -3.77 16 30 H 0.24 2.82 7.80 -4.41 -0.03 2.78 16 31 H 0.11 1.89 6.45 -2.39 -0.02 1.88 16 32 H 0.14 1.18 6.44 -2.39 -0.02 1.17 16 33 H 0.13 0.96 7.40 -2.39 -0.02 0.95 16 34 H 0.14 1.05 7.95 -2.39 -0.02 1.03 16 35 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.09 0.29 8.10 -2.39 -0.02 0.27 16 37 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 38 H 0.11 0.19 8.14 -2.38 -0.02 0.17 16 39 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.39 10.72 6.94 -92.71 -0.64 10.07 16 42 H 0.07 2.68 6.90 -2.38 -0.02 2.66 16 43 H 0.06 2.38 7.02 -2.39 -0.02 2.36 16 44 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 45 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 46 H 0.06 3.26 6.04 -2.39 -0.01 3.24 16 47 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 48 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 49 H 0.06 2.56 7.94 -2.38 -0.02 2.55 16 50 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 51 H 0.08 2.25 6.72 -2.38 -0.02 2.24 16 Total: -1.00 -81.69 401.33 3.20 -78.49 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.29 Total: 20.05 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 6.98 Total: 18.51 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -6.00 Total: -122.82 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.10 Total: -40.92 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -81.69 3.20 -78.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270326542.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.081 kcal (2) G-P(sol) polarization free energy of solvation -81.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds