Wall clock time and date at job start Wed Apr 1 2020 04:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47189 * 172.50162 * 3 2 1 5 5 C 1.34774 * 120.00033 * 89.90307 * 4 3 2 6 6 O 1.21282 * 120.00067 * 3.57314 * 5 4 3 7 7 C 1.50703 * 119.99972 * 183.56614 * 5 4 3 8 8 H 1.09000 * 108.56366 * 321.51506 * 7 5 4 9 9 C 1.51781 * 108.61684 * 203.58080 * 7 5 4 10 10 C 1.52982 * 110.88356 * 171.87923 * 9 7 5 11 11 N 1.47197 * 108.66745 * 86.46444 * 10 9 7 12 12 C 1.33374 * 120.42526 * 288.04525 * 11 10 9 13 13 O 1.21280 * 119.88668 * 180.28374 * 12 11 10 14 14 C 1.51422 * 120.22176 * 0.30373 * 12 11 10 15 15 C 1.51795 * 108.61488 * 79.44690 * 7 5 4 16 16 C 1.46505 * 120.00021 * 269.91403 * 4 3 2 17 17 C 1.53039 * 109.46190 * 55.35593 * 16 4 3 18 18 C 1.53186 * 109.31274 * 178.61802 * 17 16 4 19 19 N 1.46928 * 108.77891 * 54.63814 * 18 17 16 20 20 C 1.36931 * 120.63032 * 126.41329 * 19 18 17 21 21 H 1.08002 * 120.00086 * 330.00742 * 20 19 18 22 22 C 1.38812 * 119.99818 * 150.01203 * 20 19 18 23 23 N 1.31622 * 120.00121 * 344.33387 * 22 20 19 24 24 Si 1.86803 * 120.00295 * 164.33343 * 22 20 19 25 25 H 1.48504 * 109.46978 * 89.99740 * 24 22 20 26 26 H 1.48491 * 109.47431 * 209.99963 * 24 22 20 27 27 H 1.48508 * 109.46780 * 330.00443 * 24 22 20 28 28 C 1.46931 * 118.73439 * 306.39458 * 19 18 17 29 29 C 1.53047 * 109.45456 * 295.29055 * 16 4 3 30 30 H 4.40644 * 5.51380 * 180.02562 * 4 1 2 31 31 H 1.08997 * 109.47294 * 292.49911 * 3 2 1 32 32 H 1.09001 * 109.47438 * 52.50300 * 3 2 1 33 33 H 1.08999 * 109.19159 * 292.24012 * 9 7 5 34 34 H 1.09002 * 109.19515 * 51.56234 * 9 7 5 35 35 H 1.08998 * 109.60614 * 206.22077 * 10 9 7 36 36 H 1.09007 * 109.60335 * 326.71187 * 10 9 7 37 37 H 0.96996 * 119.78932 * 108.06093 * 11 10 9 38 38 H 1.08995 * 109.63730 * 190.91432 * 14 12 11 39 39 H 1.09003 * 109.63060 * 311.30846 * 14 12 11 40 40 H 1.08992 * 109.22003 * 308.25247 * 15 7 5 41 41 H 1.09000 * 109.21588 * 67.60058 * 15 7 5 42 42 H 1.08991 * 109.46180 * 175.32309 * 16 4 3 43 43 H 1.08996 * 109.49893 * 298.57318 * 17 16 4 44 44 H 1.09004 * 109.49461 * 58.66520 * 17 16 4 45 45 H 1.09001 * 109.58519 * 294.84938 * 18 17 16 46 46 H 1.08999 * 109.70544 * 174.49621 * 18 17 16 47 47 H 0.96996 * 120.00024 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.58364 * 293.81559 * 28 19 18 49 49 H 1.08996 * 109.70065 * 173.46760 * 28 19 18 50 50 H 1.08993 * 109.50018 * 301.34002 * 29 16 4 51 51 H 1.08999 * 109.49765 * 61.43552 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3703 -0.1802 5 6 3.3561 2.1533 0.8939 6 8 3.2148 1.7039 2.0116 7 6 3.7806 3.5871 0.7064 8 1 4.4724 3.6370 -0.1344 9 6 4.5058 4.0455 1.9584 10 6 5.1344 5.4246 1.7505 11 7 4.1284 6.4528 2.0629 12 6 3.0997 6.6631 1.2406 13 8 2.2793 7.5164 1.5049 14 6 2.9523 5.8399 -0.0217 15 6 2.5533 4.4162 0.3739 16 6 3.3795 1.8889 -1.5282 17 6 2.1097 1.7432 -2.3700 18 6 2.3598 2.3178 -3.7678 19 7 3.5433 1.6644 -4.3430 20 6 3.4808 1.0648 -5.5725 21 1 2.5520 0.6344 -5.9168 22 6 4.6111 1.0102 -6.3764 23 7 5.6433 1.7836 -6.1139 24 14 4.6675 -0.1608 -7.8307 25 1 4.1449 0.5257 -9.0395 26 1 6.0700 -0.5856 -8.0702 27 1 3.8319 -1.3532 -7.5387 28 6 4.7953 1.6668 -3.5741 29 6 4.5180 1.0995 -2.1784 30 1 -1.0502 -0.0004 0.0002 31 1 3.0095 -0.3924 0.9494 32 1 3.0096 -0.6247 -0.8153 33 1 3.7970 4.0956 2.7850 34 1 5.2896 3.3281 2.2016 35 1 5.9923 5.5392 2.4130 36 1 5.4536 5.5285 0.7134 37 1 4.2144 6.9810 2.8719 38 1 2.1790 6.2751 -0.6547 39 1 3.8997 5.8228 -0.5605 40 1 2.0201 3.9512 -0.4553 41 1 1.8989 4.4535 1.2447 42 1 3.6559 2.9415 -1.4675 43 1 1.8465 0.6886 -2.4519 44 1 1.2933 2.2864 -1.8939 45 1 2.5340 3.3914 -3.6957 46 1 1.4939 2.1300 -4.4027 47 1 6.4333 1.7452 -6.6753 48 1 5.1681 2.6873 -3.4862 49 1 5.5378 1.0488 -4.0789 50 1 5.4157 1.1844 -1.5661 51 1 4.2322 0.0510 -2.2622 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270331606.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:48 Heat of formation + Delta-G solvation = 2.309549 kcal Electronic energy + Delta-G solvation = -32496.762896 eV Core-core repulsion = 28398.016266 eV Total energy + Delta-G solvation = -4098.746630 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.99311 -39.79556 -37.84500 -36.64993 -35.41139 -34.27801 -33.08103 -32.13543 -31.33576 -30.23456 -29.63168 -28.33964 -26.41121 -25.10972 -24.36448 -22.40221 -22.33723 -21.62011 -19.99659 -19.51764 -19.21666 -17.97615 -17.65703 -17.45044 -16.86493 -16.51954 -15.94299 -15.46029 -14.92857 -14.88910 -14.45857 -14.33410 -14.12765 -13.87066 -13.74706 -13.66340 -13.35124 -13.20787 -12.90243 -12.75782 -12.66437 -12.58040 -12.43193 -12.02931 -11.73843 -11.61731 -11.34673 -11.16792 -10.98223 -10.87641 -10.79638 -10.60929 -10.43694 -10.35128 -10.25526 -10.06148 -9.95836 -9.87993 -9.79763 -9.52301 -9.32742 -8.71037 -8.50032 -6.76493 -5.89320 -3.33517 2.40037 2.49479 2.65907 2.92731 3.09716 3.31360 3.39217 3.40836 3.41471 4.21588 4.25290 4.41635 4.42380 4.44840 4.54775 4.84105 4.90762 4.99862 5.08022 5.16479 5.18593 5.26247 5.31448 5.35787 5.36844 5.45246 5.46266 5.57790 5.60161 5.66643 5.74758 5.89633 5.91405 5.98435 5.99463 6.09503 6.20902 6.33888 6.39133 6.47540 6.58420 6.60349 6.65761 6.83580 7.03553 7.19057 7.40732 7.51408 7.67210 7.71713 8.06010 8.14463 8.36023 9.11523 9.73626 10.30283 11.19577 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011299 B = 0.003394 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.432057 B = 8247.217389 C = 9449.575658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.191 4.191 3 C 0.220 3.780 4 N -0.600 5.600 5 C 0.520 3.480 6 O -0.545 6.545 7 C -0.109 4.109 8 H 0.101 0.899 9 C -0.124 4.124 10 C 0.108 3.892 11 N -0.724 5.724 12 C 0.519 3.481 13 O -0.555 6.555 14 C -0.137 4.137 15 C -0.104 4.104 16 C 0.137 3.863 17 C -0.139 4.139 18 C 0.148 3.852 19 N -0.590 5.590 20 C -0.256 4.256 21 H 0.064 0.936 22 C 0.007 3.993 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.286 1.286 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.176 3.824 29 C -0.151 4.151 30 H 0.214 0.786 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.399 0.601 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.057 0.943 47 H 0.254 0.746 48 H 0.021 0.979 49 H 0.089 0.911 50 H 0.054 0.946 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.883 3.103 14.528 14.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.192 4.192 3 C 0.098 3.902 4 N -0.331 5.331 5 C 0.309 3.691 6 O -0.422 6.422 7 C -0.131 4.131 8 H 0.118 0.882 9 C -0.162 4.162 10 C -0.017 4.017 11 N -0.377 5.377 12 C 0.306 3.694 13 O -0.433 6.433 14 C -0.177 4.177 15 C -0.142 4.142 16 C 0.035 3.965 17 C -0.179 4.179 18 C 0.021 3.979 19 N -0.313 5.313 20 C -0.385 4.385 21 H 0.082 0.918 22 C -0.192 4.192 23 N -0.546 5.546 24 Si 0.730 3.270 25 H -0.213 1.213 26 H -0.215 1.215 27 H -0.205 1.205 28 C 0.049 3.951 29 C -0.191 4.191 30 H 0.231 0.769 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.235 0.765 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.037 0.963 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.039 0.961 49 H 0.107 0.893 50 H 0.073 0.927 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.212 3.194 14.951 15.337 hybrid contribution -0.035 -0.565 -0.589 0.817 sum -1.247 2.629 14.363 14.654 Atomic orbital electron populations 1.24849 0.95848 0.99098 1.01916 1.23517 0.94868 1.01145 0.99670 1.18218 0.83666 0.84360 1.03916 1.48317 1.64496 1.13007 1.07253 1.20654 0.76548 0.87763 0.84176 1.90671 1.52353 1.75115 1.24087 1.21087 0.98999 0.92180 1.00786 0.88152 1.21668 1.00818 0.96415 0.97331 1.21824 0.90579 0.86553 1.02696 1.45977 1.26232 1.39406 1.26062 1.20625 0.80324 0.82882 0.85548 1.90750 1.42111 1.34779 1.75656 1.21989 1.05041 0.95244 0.95436 1.21180 0.96624 0.93184 1.03219 1.21479 0.96870 0.98656 0.79456 1.22405 0.95490 1.02232 0.97733 1.20882 0.91580 0.94323 0.91155 1.44032 1.06340 1.63507 1.17409 1.19138 0.97194 1.29577 0.92624 0.91795 1.25071 0.98003 0.98539 0.97592 1.69996 1.06276 1.38101 1.40221 0.86331 0.76953 0.81037 0.82644 1.21319 1.21528 1.20452 1.20724 0.89608 0.98306 0.86464 1.22651 0.96118 1.00364 0.99968 0.76867 0.87984 0.87784 0.90108 0.89848 0.88991 0.90024 0.76491 0.87780 0.88601 0.89530 0.90891 0.89082 0.91651 0.92861 0.96272 0.92425 0.93553 0.96118 0.89299 0.92744 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.50 19.25 29.55 0.57 -1.93 16 2 C -0.19 -2.64 12.11 -37.13 -0.45 -3.09 16 3 C 0.22 2.90 5.25 -6.83 -0.04 2.87 16 4 N -0.60 -7.92 2.37 -169.37 -0.40 -8.32 16 5 C 0.52 6.92 6.65 -10.98 -0.07 6.85 16 6 O -0.54 -8.80 15.69 5.56 0.09 -8.72 16 7 C -0.11 -1.12 1.29 -93.00 -0.12 -1.24 16 8 H 0.10 0.93 6.13 -51.93 -0.32 0.61 16 9 C -0.12 -1.08 4.36 -27.36 -0.12 -1.20 16 10 C 0.11 0.69 6.47 -3.67 -0.02 0.67 16 11 N -0.72 -6.13 5.27 -59.90 -0.32 -6.45 16 12 C 0.52 5.99 7.06 -11.25 -0.08 5.91 16 13 O -0.55 -8.78 17.92 5.56 0.10 -8.68 16 14 C -0.14 -1.33 5.57 -27.50 -0.15 -1.49 16 15 C -0.10 -1.08 4.57 -27.31 -0.12 -1.20 16 16 C 0.14 1.91 1.69 -67.88 -0.12 1.80 16 17 C -0.14 -2.12 4.57 -26.61 -0.12 -2.24 16 18 C 0.15 2.74 6.52 -3.71 -0.02 2.72 16 19 N -0.59 -13.26 2.98 -172.32 -0.51 -13.77 16 20 C -0.26 -6.53 9.57 -15.06 -0.14 -6.68 16 21 H 0.06 1.63 7.88 -52.49 -0.41 1.21 16 22 C 0.01 0.18 4.93 -17.43 -0.09 0.09 16 23 N -0.90 -24.44 11.25 55.49 0.62 -23.81 16 24 Si 0.90 20.61 29.58 -169.99 -5.03 15.58 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.18 3.64 5.28 -3.71 -0.02 3.62 16 29 C -0.15 -2.40 5.39 -26.61 -0.14 -2.55 16 30 H 0.21 1.95 7.80 -54.08 -0.42 1.52 16 31 H 0.10 1.33 7.38 -51.93 -0.38 0.94 16 32 H 0.10 1.31 6.71 -51.93 -0.35 0.96 16 33 H 0.08 0.84 7.97 -51.93 -0.41 0.43 16 34 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.48 6.71 -51.92 -0.35 0.13 16 37 H 0.40 2.96 8.91 -40.82 -0.36 2.60 16 38 H 0.10 1.03 8.13 -51.93 -0.42 0.61 16 39 H 0.10 0.77 6.79 -51.93 -0.35 0.42 16 40 H 0.09 0.94 6.79 -51.93 -0.35 0.59 16 41 H 0.07 0.86 7.86 -51.93 -0.41 0.45 16 42 H 0.09 1.18 4.85 -51.93 -0.25 0.93 16 43 H 0.06 1.08 7.06 -51.93 -0.37 0.72 16 44 H 0.05 0.76 7.83 -51.93 -0.41 0.35 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 47 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 2.13 6.17 -51.93 -0.32 1.81 16 50 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.06 1.02 6.90 -51.93 -0.36 0.66 16 LS Contribution 395.69 15.07 5.96 5.96 Total: -1.00 -32.47 395.69 -8.66 -41.13 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.91 Total: 4.18 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.26 Total: 2.91 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.61 Total: -52.36 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.19 Total: -17.40 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.47 -8.66 -41.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270331606.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.435 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds