Wall clock time and date at job start Wed Apr 1 2020 04:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47189 * 172.50162 * 3 2 1 5 5 C 1.34774 * 120.00033 * 89.90307 * 4 3 2 6 6 O 1.21282 * 120.00067 * 3.57314 * 5 4 3 7 7 C 1.50703 * 119.99972 * 183.56614 * 5 4 3 8 8 H 1.09000 * 108.56366 * 321.51506 * 7 5 4 9 9 C 1.51781 * 108.61684 * 203.58080 * 7 5 4 10 10 C 1.52982 * 110.88356 * 171.87923 * 9 7 5 11 11 N 1.47197 * 108.66745 * 86.46444 * 10 9 7 12 12 C 1.33374 * 120.42526 * 288.04525 * 11 10 9 13 13 O 1.21280 * 119.88668 * 180.28374 * 12 11 10 14 14 C 1.51422 * 120.22176 * 0.30373 * 12 11 10 15 15 C 1.51795 * 108.61488 * 79.44690 * 7 5 4 16 16 C 1.46505 * 120.00021 * 269.91403 * 4 3 2 17 17 C 1.53039 * 109.46190 * 55.35593 * 16 4 3 18 18 C 1.53186 * 109.31274 * 178.61802 * 17 16 4 19 19 N 1.46928 * 108.77891 * 54.63814 * 18 17 16 20 20 C 1.36931 * 120.63032 * 126.41329 * 19 18 17 21 21 H 1.08002 * 120.00086 * 330.00742 * 20 19 18 22 22 C 1.38812 * 119.99818 * 150.01203 * 20 19 18 23 23 N 1.31622 * 120.00121 * 344.33387 * 22 20 19 24 24 Si 1.86803 * 120.00295 * 164.33343 * 22 20 19 25 25 H 1.48504 * 109.46978 * 89.99740 * 24 22 20 26 26 H 1.48491 * 109.47431 * 209.99963 * 24 22 20 27 27 H 1.48508 * 109.46780 * 330.00443 * 24 22 20 28 28 C 1.46931 * 118.73439 * 306.39458 * 19 18 17 29 29 C 1.53047 * 109.45456 * 295.29055 * 16 4 3 30 30 H 4.40644 * 5.51380 * 180.02562 * 4 1 2 31 31 H 1.08997 * 109.47294 * 292.49911 * 3 2 1 32 32 H 1.09001 * 109.47438 * 52.50300 * 3 2 1 33 33 H 1.08999 * 109.19159 * 292.24012 * 9 7 5 34 34 H 1.09002 * 109.19515 * 51.56234 * 9 7 5 35 35 H 1.08998 * 109.60614 * 206.22077 * 10 9 7 36 36 H 1.09007 * 109.60335 * 326.71187 * 10 9 7 37 37 H 0.96996 * 119.78932 * 108.06093 * 11 10 9 38 38 H 1.08995 * 109.63730 * 190.91432 * 14 12 11 39 39 H 1.09003 * 109.63060 * 311.30846 * 14 12 11 40 40 H 1.08992 * 109.22003 * 308.25247 * 15 7 5 41 41 H 1.09000 * 109.21588 * 67.60058 * 15 7 5 42 42 H 1.08991 * 109.46180 * 175.32309 * 16 4 3 43 43 H 1.08996 * 109.49893 * 298.57318 * 17 16 4 44 44 H 1.09004 * 109.49461 * 58.66520 * 17 16 4 45 45 H 1.09001 * 109.58519 * 294.84938 * 18 17 16 46 46 H 1.08999 * 109.70544 * 174.49621 * 18 17 16 47 47 H 0.96996 * 120.00024 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.58364 * 293.81559 * 28 19 18 49 49 H 1.08996 * 109.70065 * 173.46760 * 28 19 18 50 50 H 1.08993 * 109.50018 * 301.34002 * 29 16 4 51 51 H 1.08999 * 109.49765 * 61.43552 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3703 -0.1802 5 6 3.3561 2.1533 0.8939 6 8 3.2148 1.7039 2.0116 7 6 3.7806 3.5871 0.7064 8 1 4.4724 3.6370 -0.1344 9 6 4.5058 4.0455 1.9584 10 6 5.1344 5.4246 1.7505 11 7 4.1284 6.4528 2.0629 12 6 3.0997 6.6631 1.2406 13 8 2.2793 7.5164 1.5049 14 6 2.9523 5.8399 -0.0217 15 6 2.5533 4.4162 0.3739 16 6 3.3795 1.8889 -1.5282 17 6 2.1097 1.7432 -2.3700 18 6 2.3598 2.3178 -3.7678 19 7 3.5433 1.6644 -4.3430 20 6 3.4808 1.0648 -5.5725 21 1 2.5520 0.6344 -5.9168 22 6 4.6111 1.0102 -6.3764 23 7 5.6433 1.7836 -6.1139 24 14 4.6675 -0.1608 -7.8307 25 1 4.1449 0.5257 -9.0395 26 1 6.0700 -0.5856 -8.0702 27 1 3.8319 -1.3532 -7.5387 28 6 4.7953 1.6668 -3.5741 29 6 4.5180 1.0995 -2.1784 30 1 -1.0502 -0.0004 0.0002 31 1 3.0095 -0.3924 0.9494 32 1 3.0096 -0.6247 -0.8153 33 1 3.7970 4.0956 2.7850 34 1 5.2896 3.3281 2.2016 35 1 5.9923 5.5392 2.4130 36 1 5.4536 5.5285 0.7134 37 1 4.2144 6.9810 2.8719 38 1 2.1790 6.2751 -0.6547 39 1 3.8997 5.8228 -0.5605 40 1 2.0201 3.9512 -0.4553 41 1 1.8989 4.4535 1.2447 42 1 3.6559 2.9415 -1.4675 43 1 1.8465 0.6886 -2.4519 44 1 1.2933 2.2864 -1.8939 45 1 2.5340 3.3914 -3.6957 46 1 1.4939 2.1300 -4.4027 47 1 6.4333 1.7452 -6.6753 48 1 5.1681 2.6873 -3.4862 49 1 5.5378 1.0488 -4.0789 50 1 5.4157 1.1844 -1.5661 51 1 4.2322 0.0510 -2.2622 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270331606.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:46 Heat of formation + Delta-G solvation = -17.997751 kcal Electronic energy + Delta-G solvation = -32497.643487 eV Core-core repulsion = 28398.016266 eV Total energy + Delta-G solvation = -4099.627221 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.96219 -40.76095 -39.17936 -37.58016 -36.77037 -35.11600 -34.40313 -33.54521 -32.13961 -31.68477 -31.21238 -29.25220 -27.40462 -26.71714 -25.15523 -23.88031 -23.78092 -22.51238 -20.96105 -20.72462 -20.21554 -19.11453 -18.65406 -18.54976 -18.17331 -17.40331 -17.15016 -16.68286 -16.43354 -15.86101 -15.61498 -15.40676 -15.30659 -15.13400 -14.86947 -14.73488 -14.54387 -14.40856 -14.15916 -14.08964 -13.85390 -13.47174 -13.20398 -13.18799 -12.97178 -12.85548 -12.60847 -12.54432 -12.51139 -12.15664 -12.04619 -11.86204 -11.79536 -11.70640 -11.53285 -11.46504 -11.32107 -11.03578 -10.88021 -10.63974 -10.50780 -10.11303 -9.79519 -8.59690 -7.84008 -5.28924 1.37611 1.48776 1.52056 1.55614 1.59566 1.67297 1.91535 2.37641 2.40428 2.54664 3.28106 3.34756 3.45186 3.51888 3.70315 3.72556 3.78004 3.82207 4.09552 4.10443 4.20841 4.29651 4.35303 4.40362 4.47761 4.50745 4.52773 4.56023 4.65992 4.70019 4.72761 4.84812 4.88055 4.99945 5.03126 5.05453 5.06665 5.09393 5.17565 5.19118 5.29028 5.38436 5.44939 5.59181 5.71143 5.81946 5.90806 6.27771 6.35421 6.45837 6.67934 7.08983 7.21915 7.25170 7.92098 8.42261 9.22072 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011299 B = 0.003394 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.432057 B = 8247.217389 C = 9449.575658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.228 4.228 3 C 0.219 3.781 4 N -0.596 5.596 5 C 0.519 3.481 6 O -0.574 6.574 7 C -0.106 4.106 8 H 0.119 0.881 9 C -0.119 4.119 10 C 0.109 3.891 11 N -0.714 5.714 12 C 0.514 3.486 13 O -0.607 6.607 14 C -0.131 4.131 15 C -0.096 4.096 16 C 0.150 3.850 17 C -0.123 4.123 18 C 0.146 3.854 19 N -0.608 5.608 20 C -0.262 4.262 21 H 0.059 0.941 22 C -0.040 4.040 23 N -0.928 5.928 24 Si 0.956 3.044 25 H -0.287 1.287 26 H -0.293 1.293 27 H -0.275 1.275 28 C 0.182 3.818 29 C -0.136 4.136 30 H 0.243 0.757 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.405 0.595 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.109 0.891 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.028 0.972 46 H 0.050 0.950 47 H 0.250 0.750 48 H 0.013 0.987 49 H 0.052 0.948 50 H 0.075 0.925 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.593 3.257 15.226 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.229 4.229 3 C 0.097 3.903 4 N -0.326 5.326 5 C 0.309 3.691 6 O -0.454 6.454 7 C -0.126 4.126 8 H 0.137 0.863 9 C -0.158 4.158 10 C -0.014 4.014 11 N -0.364 5.364 12 C 0.302 3.698 13 O -0.489 6.489 14 C -0.171 4.171 15 C -0.135 4.135 16 C 0.047 3.953 17 C -0.163 4.163 18 C 0.020 3.980 19 N -0.331 5.331 20 C -0.393 4.393 21 H 0.077 0.923 22 C -0.236 4.236 23 N -0.573 5.573 24 Si 0.785 3.215 25 H -0.214 1.214 26 H -0.219 1.219 27 H -0.200 1.200 28 C 0.056 3.944 29 C -0.176 4.176 30 H 0.260 0.740 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.141 0.859 36 H 0.116 0.884 37 H 0.241 0.759 38 H 0.119 0.881 39 H 0.138 0.862 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.127 0.873 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.046 0.954 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.031 0.969 49 H 0.071 0.929 50 H 0.094 0.906 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.911 3.324 15.676 16.051 hybrid contribution -0.186 -0.657 -0.757 1.020 sum -1.097 2.667 14.919 15.195 Atomic orbital electron populations 1.25655 0.96757 0.97668 1.00533 1.23836 0.95549 1.02519 1.00998 1.18234 0.83802 0.84373 1.03922 1.48237 1.64330 1.13139 1.06856 1.21181 0.75688 0.88722 0.83494 1.90663 1.53609 1.75919 1.25165 1.21172 0.99248 0.89917 1.02309 0.86333 1.21642 1.00420 0.97948 0.95786 1.22031 0.90411 0.84323 1.04597 1.46004 1.25637 1.39189 1.25557 1.20959 0.80244 0.82371 0.86241 1.90726 1.44143 1.37144 1.76907 1.21966 1.06254 0.94124 0.94776 1.21082 0.96387 0.93632 1.02356 1.21276 0.95331 0.99226 0.79456 1.22186 0.96677 1.01389 0.96017 1.20984 0.89841 0.94652 0.92521 1.44262 1.07826 1.64053 1.16999 1.19388 0.96950 1.29182 0.93739 0.92288 1.25657 0.98022 1.00029 0.99892 1.70114 1.06565 1.39504 1.41146 0.85462 0.76507 0.79481 0.80072 1.21434 1.21906 1.19977 1.20532 0.88265 0.97304 0.88295 1.22411 0.97897 0.99765 0.97544 0.74047 0.88159 0.87569 0.92077 0.89255 0.85901 0.88399 0.75880 0.88070 0.86163 0.89719 0.92669 0.87296 0.92857 0.91197 0.95401 0.93166 0.94098 0.96910 0.92944 0.90622 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.37 19.25 74.32 1.43 -2.94 16 2 C -0.23 -6.02 12.11 31.12 0.38 -5.64 16 3 C 0.22 5.52 5.25 84.57 0.44 5.96 16 4 N -0.60 -14.60 2.37 -808.15 -1.91 -16.51 16 5 C 0.52 12.83 6.65 87.66 0.58 13.41 16 6 O -0.57 -17.90 15.69 -3.04 -0.05 -17.94 16 7 C -0.11 -1.88 1.29 -12.34 -0.02 -1.89 16 8 H 0.12 1.72 6.13 -2.39 -0.01 1.70 16 9 C -0.12 -1.77 4.36 30.19 0.13 -1.64 16 10 C 0.11 1.02 6.47 86.24 0.56 1.58 16 11 N -0.71 -10.53 5.27 -462.60 -2.44 -12.97 16 12 C 0.51 11.19 7.06 88.10 0.62 11.81 16 13 O -0.61 -19.17 17.92 -3.03 -0.05 -19.22 16 14 C -0.13 -2.27 5.57 30.10 0.17 -2.10 16 15 C -0.10 -1.81 4.57 30.22 0.14 -1.67 16 16 C 0.15 3.82 1.69 45.02 0.08 3.90 16 17 C -0.12 -3.53 4.57 30.67 0.14 -3.39 16 18 C 0.15 5.24 6.52 86.36 0.56 5.80 16 19 N -0.61 -27.08 2.98 -699.11 -2.09 -29.17 16 20 C -0.26 -13.42 9.57 84.03 0.80 -12.62 16 21 H 0.06 3.01 7.88 -2.91 -0.02 2.99 16 22 C -0.04 -2.08 4.93 84.86 0.42 -1.66 16 23 N -0.93 -50.82 11.25 21.65 0.24 -50.57 16 24 Si 0.96 42.64 29.58 68.60 2.03 44.66 16 25 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 28 C 0.18 7.47 5.28 86.36 0.46 7.92 16 29 C -0.14 -4.12 5.39 30.67 0.17 -3.96 16 30 H 0.24 3.75 7.80 -4.41 -0.03 3.71 16 31 H 0.10 2.55 7.38 -2.39 -0.02 2.53 16 32 H 0.11 2.58 6.71 -2.39 -0.02 2.57 16 33 H 0.06 1.18 7.97 -2.39 -0.02 1.16 16 34 H 0.09 1.27 8.09 -2.39 -0.02 1.25 16 35 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.10 0.69 6.71 -2.38 -0.02 0.67 16 37 H 0.40 5.26 8.91 -92.71 -0.83 4.44 16 38 H 0.10 1.85 8.13 -2.39 -0.02 1.83 16 39 H 0.12 1.49 6.79 -2.39 -0.02 1.47 16 40 H 0.08 1.64 6.79 -2.39 -0.02 1.62 16 41 H 0.05 1.25 7.86 -2.39 -0.02 1.23 16 42 H 0.11 2.45 4.85 -2.39 -0.01 2.44 16 43 H 0.05 1.69 7.06 -2.39 -0.02 1.67 16 44 H 0.07 1.81 7.83 -2.39 -0.02 1.79 16 45 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 47 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 48 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.05 2.54 6.17 -2.39 -0.01 2.53 16 50 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.05 1.70 6.90 -2.39 -0.02 1.69 16 Total: -1.00 -71.81 395.69 2.91 -68.90 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.12 Total: 19.96 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 7.06 Total: 12.87 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -6.19 Total: -109.23 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -0.10 Total: -37.17 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -71.81 2.91 -68.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270331606.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.903 kcal (2) G-P(sol) polarization free energy of solvation -71.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds