Wall clock time and date at job start Wed Apr 1 2020 04:24:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17404 * 1
3 3 C 1.47194 * 179.97438 * 2 1
4 4 N 1.46503 * 109.47189 * 172.50162 * 3 2 1
5 5 C 1.34774 * 120.00033 * 89.90307 * 4 3 2
6 6 O 1.21282 * 120.00067 * 3.57314 * 5 4 3
7 7 C 1.50703 * 119.99972 * 183.56614 * 5 4 3
8 8 H 1.09000 * 108.56366 * 321.51506 * 7 5 4
9 9 C 1.51781 * 108.61684 * 203.58080 * 7 5 4
10 10 C 1.52982 * 110.88356 * 171.87923 * 9 7 5
11 11 N 1.47197 * 108.66745 * 86.46444 * 10 9 7
12 12 C 1.33374 * 120.42526 * 288.04525 * 11 10 9
13 13 O 1.21280 * 119.88668 * 180.28374 * 12 11 10
14 14 C 1.51422 * 120.22176 * 0.30373 * 12 11 10
15 15 C 1.51795 * 108.61488 * 79.44690 * 7 5 4
16 16 C 1.46505 * 120.00021 * 269.91403 * 4 3 2
17 17 C 1.53039 * 109.46190 * 55.35593 * 16 4 3
18 18 C 1.53186 * 109.31274 * 178.61802 * 17 16 4
19 19 N 1.46928 * 108.77891 * 54.63814 * 18 17 16
20 20 C 1.36931 * 120.63032 * 126.41329 * 19 18 17
21 21 H 1.08002 * 120.00086 * 330.00742 * 20 19 18
22 22 C 1.38812 * 119.99818 * 150.01203 * 20 19 18
23 23 N 1.31622 * 120.00121 * 344.33387 * 22 20 19
24 24 Si 1.86803 * 120.00295 * 164.33343 * 22 20 19
25 25 H 1.48504 * 109.46978 * 89.99740 * 24 22 20
26 26 H 1.48491 * 109.47431 * 209.99963 * 24 22 20
27 27 H 1.48508 * 109.46780 * 330.00443 * 24 22 20
28 28 C 1.46931 * 118.73439 * 306.39458 * 19 18 17
29 29 C 1.53047 * 109.45456 * 295.29055 * 16 4 3
30 30 H 4.40644 * 5.51380 * 180.02562 * 4 1 2
31 31 H 1.08997 * 109.47294 * 292.49911 * 3 2 1
32 32 H 1.09001 * 109.47438 * 52.50300 * 3 2 1
33 33 H 1.08999 * 109.19159 * 292.24012 * 9 7 5
34 34 H 1.09002 * 109.19515 * 51.56234 * 9 7 5
35 35 H 1.08998 * 109.60614 * 206.22077 * 10 9 7
36 36 H 1.09007 * 109.60335 * 326.71187 * 10 9 7
37 37 H 0.96996 * 119.78932 * 108.06093 * 11 10 9
38 38 H 1.08995 * 109.63730 * 190.91432 * 14 12 11
39 39 H 1.09003 * 109.63060 * 311.30846 * 14 12 11
40 40 H 1.08992 * 109.22003 * 308.25247 * 15 7 5
41 41 H 1.09000 * 109.21588 * 67.60058 * 15 7 5
42 42 H 1.08991 * 109.46180 * 175.32309 * 16 4 3
43 43 H 1.08996 * 109.49893 * 298.57318 * 17 16 4
44 44 H 1.09004 * 109.49461 * 58.66520 * 17 16 4
45 45 H 1.09001 * 109.58519 * 294.84938 * 18 17 16
46 46 H 1.08999 * 109.70544 * 174.49621 * 18 17 16
47 47 H 0.96996 * 120.00024 * 179.97438 * 23 22 20
48 48 H 1.08999 * 109.58364 * 293.81559 * 28 19 18
49 49 H 1.08996 * 109.70065 * 173.46760 * 28 19 18
50 50 H 1.08993 * 109.50018 * 301.34002 * 29 16 4
51 51 H 1.08999 * 109.49765 * 61.43552 * 29 16 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1337 1.3703 -0.1802
5 6 3.3561 2.1533 0.8939
6 8 3.2148 1.7039 2.0116
7 6 3.7806 3.5871 0.7064
8 1 4.4724 3.6370 -0.1344
9 6 4.5058 4.0455 1.9584
10 6 5.1344 5.4246 1.7505
11 7 4.1284 6.4528 2.0629
12 6 3.0997 6.6631 1.2406
13 8 2.2793 7.5164 1.5049
14 6 2.9523 5.8399 -0.0217
15 6 2.5533 4.4162 0.3739
16 6 3.3795 1.8889 -1.5282
17 6 2.1097 1.7432 -2.3700
18 6 2.3598 2.3178 -3.7678
19 7 3.5433 1.6644 -4.3430
20 6 3.4808 1.0648 -5.5725
21 1 2.5520 0.6344 -5.9168
22 6 4.6111 1.0102 -6.3764
23 7 5.6433 1.7836 -6.1139
24 14 4.6675 -0.1608 -7.8307
25 1 4.1449 0.5257 -9.0395
26 1 6.0700 -0.5856 -8.0702
27 1 3.8319 -1.3532 -7.5387
28 6 4.7953 1.6668 -3.5741
29 6 4.5180 1.0995 -2.1784
30 1 -1.0502 -0.0004 0.0002
31 1 3.0095 -0.3924 0.9494
32 1 3.0096 -0.6247 -0.8153
33 1 3.7970 4.0956 2.7850
34 1 5.2896 3.3281 2.2016
35 1 5.9923 5.5392 2.4130
36 1 5.4536 5.5285 0.7134
37 1 4.2144 6.9810 2.8719
38 1 2.1790 6.2751 -0.6547
39 1 3.8997 5.8228 -0.5605
40 1 2.0201 3.9512 -0.4553
41 1 1.8989 4.4535 1.2447
42 1 3.6559 2.9415 -1.4675
43 1 1.8465 0.6886 -2.4519
44 1 1.2933 2.2864 -1.8939
45 1 2.5340 3.3914 -3.6957
46 1 1.4939 2.1300 -4.4027
47 1 6.4333 1.7452 -6.6753
48 1 5.1681 2.6873 -3.4862
49 1 5.5378 1.0488 -4.0789
50 1 5.4157 1.1844 -1.5661
51 1 4.2322 0.0510 -2.2622
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001270331606.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:24:46
Heat of formation + Delta-G solvation = -17.997751 kcal
Electronic energy + Delta-G solvation = -32497.643487 eV
Core-core repulsion = 28398.016266 eV
Total energy + Delta-G solvation = -4099.627221 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.35 seconds
Orbital eigenvalues (eV)
-41.96219 -40.76095 -39.17936 -37.58016 -36.77037 -35.11600 -34.40313 -33.54521
-32.13961 -31.68477 -31.21238 -29.25220 -27.40462 -26.71714 -25.15523 -23.88031
-23.78092 -22.51238 -20.96105 -20.72462 -20.21554 -19.11453 -18.65406 -18.54976
-18.17331 -17.40331 -17.15016 -16.68286 -16.43354 -15.86101 -15.61498 -15.40676
-15.30659 -15.13400 -14.86947 -14.73488 -14.54387 -14.40856 -14.15916 -14.08964
-13.85390 -13.47174 -13.20398 -13.18799 -12.97178 -12.85548 -12.60847 -12.54432
-12.51139 -12.15664 -12.04619 -11.86204 -11.79536 -11.70640 -11.53285 -11.46504
-11.32107 -11.03578 -10.88021 -10.63974 -10.50780 -10.11303 -9.79519 -8.59690
-7.84008 -5.28924 1.37611 1.48776 1.52056 1.55614 1.59566 1.67297
1.91535 2.37641 2.40428 2.54664 3.28106 3.34756 3.45186 3.51888
3.70315 3.72556 3.78004 3.82207 4.09552 4.10443 4.20841 4.29651
4.35303 4.40362 4.47761 4.50745 4.52773 4.56023 4.65992 4.70019
4.72761 4.84812 4.88055 4.99945 5.03126 5.05453 5.06665 5.09393
5.17565 5.19118 5.29028 5.38436 5.44939 5.59181 5.71143 5.81946
5.90806 6.27771 6.35421 6.45837 6.67934 7.08983 7.21915 7.25170
7.92098 8.42261 9.22072
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011299 B = 0.003394 C = 0.002962
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2477.432057 B = 8247.217389 C = 9449.575658
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.228 4.228
3 C 0.219 3.781
4 N -0.596 5.596
5 C 0.519 3.481
6 O -0.574 6.574
7 C -0.106 4.106
8 H 0.119 0.881
9 C -0.119 4.119
10 C 0.109 3.891
11 N -0.714 5.714
12 C 0.514 3.486
13 O -0.607 6.607
14 C -0.131 4.131
15 C -0.096 4.096
16 C 0.150 3.850
17 C -0.123 4.123
18 C 0.146 3.854
19 N -0.608 5.608
20 C -0.262 4.262
21 H 0.059 0.941
22 C -0.040 4.040
23 N -0.928 5.928
24 Si 0.956 3.044
25 H -0.287 1.287
26 H -0.293 1.293
27 H -0.275 1.275
28 C 0.182 3.818
29 C -0.136 4.136
30 H 0.243 0.757
31 H 0.100 0.900
32 H 0.106 0.894
33 H 0.060 0.940
34 H 0.089 0.911
35 H 0.123 0.877
36 H 0.098 0.902
37 H 0.405 0.595
38 H 0.101 0.899
39 H 0.120 0.880
40 H 0.084 0.916
41 H 0.054 0.946
42 H 0.109 0.891
43 H 0.053 0.947
44 H 0.069 0.931
45 H 0.028 0.972
46 H 0.050 0.950
47 H 0.250 0.750
48 H 0.013 0.987
49 H 0.052 0.948
50 H 0.075 0.925
51 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.593 3.257 15.226 15.582
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.229 4.229
3 C 0.097 3.903
4 N -0.326 5.326
5 C 0.309 3.691
6 O -0.454 6.454
7 C -0.126 4.126
8 H 0.137 0.863
9 C -0.158 4.158
10 C -0.014 4.014
11 N -0.364 5.364
12 C 0.302 3.698
13 O -0.489 6.489
14 C -0.171 4.171
15 C -0.135 4.135
16 C 0.047 3.953
17 C -0.163 4.163
18 C 0.020 3.980
19 N -0.331 5.331
20 C -0.393 4.393
21 H 0.077 0.923
22 C -0.236 4.236
23 N -0.573 5.573
24 Si 0.785 3.215
25 H -0.214 1.214
26 H -0.219 1.219
27 H -0.200 1.200
28 C 0.056 3.944
29 C -0.176 4.176
30 H 0.260 0.740
31 H 0.118 0.882
32 H 0.124 0.876
33 H 0.079 0.921
34 H 0.107 0.893
35 H 0.141 0.859
36 H 0.116 0.884
37 H 0.241 0.759
38 H 0.119 0.881
39 H 0.138 0.862
40 H 0.103 0.897
41 H 0.073 0.927
42 H 0.127 0.873
43 H 0.071 0.929
44 H 0.088 0.912
45 H 0.046 0.954
46 H 0.068 0.932
47 H 0.059 0.941
48 H 0.031 0.969
49 H 0.071 0.929
50 H 0.094 0.906
51 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -0.911 3.324 15.676 16.051
hybrid contribution -0.186 -0.657 -0.757 1.020
sum -1.097 2.667 14.919 15.195
Atomic orbital electron populations
1.25655 0.96757 0.97668 1.00533 1.23836 0.95549 1.02519 1.00998
1.18234 0.83802 0.84373 1.03922 1.48237 1.64330 1.13139 1.06856
1.21181 0.75688 0.88722 0.83494 1.90663 1.53609 1.75919 1.25165
1.21172 0.99248 0.89917 1.02309 0.86333 1.21642 1.00420 0.97948
0.95786 1.22031 0.90411 0.84323 1.04597 1.46004 1.25637 1.39189
1.25557 1.20959 0.80244 0.82371 0.86241 1.90726 1.44143 1.37144
1.76907 1.21966 1.06254 0.94124 0.94776 1.21082 0.96387 0.93632
1.02356 1.21276 0.95331 0.99226 0.79456 1.22186 0.96677 1.01389
0.96017 1.20984 0.89841 0.94652 0.92521 1.44262 1.07826 1.64053
1.16999 1.19388 0.96950 1.29182 0.93739 0.92288 1.25657 0.98022
1.00029 0.99892 1.70114 1.06565 1.39504 1.41146 0.85462 0.76507
0.79481 0.80072 1.21434 1.21906 1.19977 1.20532 0.88265 0.97304
0.88295 1.22411 0.97897 0.99765 0.97544 0.74047 0.88159 0.87569
0.92077 0.89255 0.85901 0.88399 0.75880 0.88070 0.86163 0.89719
0.92669 0.87296 0.92857 0.91197 0.95401 0.93166 0.94098 0.96910
0.92944 0.90622 0.92895
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -4.37 19.25 74.32 1.43 -2.94 16
2 C -0.23 -6.02 12.11 31.12 0.38 -5.64 16
3 C 0.22 5.52 5.25 84.57 0.44 5.96 16
4 N -0.60 -14.60 2.37 -808.15 -1.91 -16.51 16
5 C 0.52 12.83 6.65 87.66 0.58 13.41 16
6 O -0.57 -17.90 15.69 -3.04 -0.05 -17.94 16
7 C -0.11 -1.88 1.29 -12.34 -0.02 -1.89 16
8 H 0.12 1.72 6.13 -2.39 -0.01 1.70 16
9 C -0.12 -1.77 4.36 30.19 0.13 -1.64 16
10 C 0.11 1.02 6.47 86.24 0.56 1.58 16
11 N -0.71 -10.53 5.27 -462.60 -2.44 -12.97 16
12 C 0.51 11.19 7.06 88.10 0.62 11.81 16
13 O -0.61 -19.17 17.92 -3.03 -0.05 -19.22 16
14 C -0.13 -2.27 5.57 30.10 0.17 -2.10 16
15 C -0.10 -1.81 4.57 30.22 0.14 -1.67 16
16 C 0.15 3.82 1.69 45.02 0.08 3.90 16
17 C -0.12 -3.53 4.57 30.67 0.14 -3.39 16
18 C 0.15 5.24 6.52 86.36 0.56 5.80 16
19 N -0.61 -27.08 2.98 -699.11 -2.09 -29.17 16
20 C -0.26 -13.42 9.57 84.03 0.80 -12.62 16
21 H 0.06 3.01 7.88 -2.91 -0.02 2.99 16
22 C -0.04 -2.08 4.93 84.86 0.42 -1.66 16
23 N -0.93 -50.82 11.25 21.65 0.24 -50.57 16
24 Si 0.96 42.64 29.58 68.60 2.03 44.66 16
25 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16
26 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16
27 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16
28 C 0.18 7.47 5.28 86.36 0.46 7.92 16
29 C -0.14 -4.12 5.39 30.67 0.17 -3.96 16
30 H 0.24 3.75 7.80 -4.41 -0.03 3.71 16
31 H 0.10 2.55 7.38 -2.39 -0.02 2.53 16
32 H 0.11 2.58 6.71 -2.39 -0.02 2.57 16
33 H 0.06 1.18 7.97 -2.39 -0.02 1.16 16
34 H 0.09 1.27 8.09 -2.39 -0.02 1.25 16
35 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16
36 H 0.10 0.69 6.71 -2.38 -0.02 0.67 16
37 H 0.40 5.26 8.91 -92.71 -0.83 4.44 16
38 H 0.10 1.85 8.13 -2.39 -0.02 1.83 16
39 H 0.12 1.49 6.79 -2.39 -0.02 1.47 16
40 H 0.08 1.64 6.79 -2.39 -0.02 1.62 16
41 H 0.05 1.25 7.86 -2.39 -0.02 1.23 16
42 H 0.11 2.45 4.85 -2.39 -0.01 2.44 16
43 H 0.05 1.69 7.06 -2.39 -0.02 1.67 16
44 H 0.07 1.81 7.83 -2.39 -0.02 1.79 16
45 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16
46 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16
47 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16
48 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16
49 H 0.05 2.54 6.17 -2.39 -0.01 2.53 16
50 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16
51 H 0.05 1.70 6.90 -2.39 -0.02 1.69 16
Total: -1.00 -71.81 395.69 2.91 -68.90
By element:
Atomic # 1 Polarization: 19.84 SS G_CDS: 0.12 Total: 19.96 kcal
Atomic # 6 Polarization: 5.81 SS G_CDS: 7.06 Total: 12.87 kcal
Atomic # 7 Polarization: -103.03 SS G_CDS: -6.19 Total: -109.23 kcal
Atomic # 8 Polarization: -37.06 SS G_CDS: -0.10 Total: -37.17 kcal
Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal
Total: -71.81 2.91 -68.90 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001270331606.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.903 kcal
(2) G-P(sol) polarization free energy of solvation -71.810 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.907 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.900 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.998 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.35 seconds