Wall clock time and date at job start Wed Apr 1 2020 04:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46492 * 109.46530 * 204.15976 * 3 2 1 5 5 C 1.34778 * 120.00127 * 84.74558 * 4 3 2 6 6 O 1.21280 * 120.00367 * 175.28230 * 5 4 3 7 7 C 1.50703 * 119.99841 * 355.27501 * 5 4 3 8 8 H 1.08999 * 108.56380 * 334.76855 * 7 5 4 9 9 C 1.51770 * 108.61474 * 92.70130 * 7 5 4 10 10 C 1.52989 * 110.88363 * 188.12531 * 9 7 5 11 11 N 1.47201 * 108.66546 * 273.53477 * 10 9 7 12 12 C 1.33369 * 120.42381 * 71.95295 * 11 10 9 13 13 O 1.21281 * 119.88451 * 179.72048 * 12 11 10 14 14 C 1.51420 * 120.21971 * 359.69563 * 12 11 10 15 15 C 1.51785 * 108.61573 * 216.96687 * 7 5 4 16 16 C 1.46501 * 120.00311 * 265.00848 * 4 3 2 17 17 C 1.53048 * 109.45591 * 59.75821 * 16 4 3 18 18 C 1.53195 * 109.31268 * 178.59952 * 17 16 4 19 19 N 1.46929 * 108.76200 * 54.65550 * 18 17 16 20 20 C 1.36930 * 120.62962 * 126.40798 * 19 18 17 21 21 H 1.08005 * 119.99837 * 322.91200 * 20 19 18 22 22 C 1.38812 * 120.00452 * 142.91162 * 20 19 18 23 23 N 1.31626 * 119.99813 * 349.70587 * 22 20 19 24 24 Si 1.86801 * 120.00342 * 169.70628 * 22 20 19 25 25 H 1.48496 * 109.46990 * 60.00089 * 24 22 20 26 26 H 1.48497 * 109.47146 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47254 * 300.00096 * 24 22 20 28 28 C 1.46929 * 118.74054 * 306.37968 * 19 18 17 29 29 C 1.53038 * 109.46348 * 299.70415 * 16 4 3 30 30 H 4.40630 * 5.51461 * 180.02562 * 4 1 2 31 31 H 1.09002 * 109.46855 * 84.16252 * 3 2 1 32 32 H 1.08994 * 109.47641 * 324.16287 * 3 2 1 33 33 H 1.09004 * 109.19932 * 308.48638 * 9 7 5 34 34 H 1.09000 * 109.19799 * 67.76365 * 9 7 5 35 35 H 1.09003 * 109.60344 * 33.28706 * 10 9 7 36 36 H 1.09004 * 109.60728 * 153.78250 * 10 9 7 37 37 H 0.97000 * 119.78022 * 251.98131 * 11 10 9 38 38 H 1.09002 * 109.63135 * 48.49440 * 14 12 11 39 39 H 1.09006 * 109.63089 * 168.88136 * 14 12 11 40 40 H 1.08999 * 109.22506 * 292.39468 * 15 7 5 41 41 H 1.08998 * 109.22973 * 51.74803 * 15 7 5 42 42 H 1.09005 * 109.46359 * 179.72623 * 16 4 3 43 43 H 1.09001 * 109.49865 * 298.56657 * 17 16 4 44 44 H 1.09002 * 109.49754 * 58.66443 * 17 16 4 45 45 H 1.09000 * 109.59655 * 294.87326 * 18 17 16 46 46 H 1.08997 * 109.70287 * 174.50507 * 18 17 16 47 47 H 0.96995 * 119.99837 * 180.02562 * 23 22 20 48 48 H 1.08994 * 109.58722 * 293.82670 * 28 19 18 49 49 H 1.09001 * 109.58660 * 173.39677 * 28 19 18 50 50 H 1.08998 * 109.49517 * 301.33564 * 29 16 4 51 51 H 1.09004 * 109.49726 * 61.42900 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.2611 0.5653 5 6 3.2574 1.3977 1.9004 6 8 3.7410 2.4085 2.3644 7 6 2.7946 0.2944 2.8168 8 1 2.0231 -0.2810 2.3051 9 6 3.9703 -0.6209 3.1053 10 6 3.5166 -1.8684 3.8659 11 7 3.5117 -1.5659 5.3065 12 6 2.5816 -0.7627 5.8248 13 8 2.5838 -0.5242 7.0139 14 6 1.5236 -0.1472 4.9335 15 6 2.1855 0.9195 4.0586 16 6 3.4813 2.3752 -0.3202 17 6 2.2514 2.7813 -1.1355 18 6 2.6092 3.9689 -2.0347 19 7 3.7799 3.6108 -2.8470 20 6 3.7466 3.7321 -4.2105 21 1 2.8404 3.5014 -4.7511 22 6 4.8772 4.1514 -4.8980 23 7 5.9119 4.6249 -4.2363 24 14 4.9304 4.0440 -6.7621 25 1 3.8356 4.8664 -7.3367 26 1 6.2381 4.5510 -7.2501 27 1 4.7596 2.6298 -7.1815 28 6 4.9874 3.1206 -2.1684 29 6 4.6029 1.9428 -1.2674 30 1 -1.0502 -0.0004 0.0000 31 1 3.0094 -0.1037 -1.0224 32 1 3.0098 -0.8322 0.6016 33 1 4.4293 -0.9225 2.1637 34 1 4.7047 -0.0830 3.7048 35 1 2.5119 -2.1458 3.5470 36 1 4.2058 -2.6890 3.6668 37 1 4.1895 -1.9531 5.8823 38 1 1.0838 -0.9183 4.3009 39 1 0.7473 0.3090 5.5479 40 1 2.9684 1.4174 4.6307 41 1 1.4374 1.6541 3.7607 42 1 3.8171 3.2229 0.2772 43 1 1.9300 1.9418 -1.7520 44 1 1.4451 3.0668 -0.4598 45 1 2.8438 4.8366 -1.4182 46 1 1.7684 4.2015 -2.6882 47 1 6.7018 4.9182 -4.7167 48 1 5.4159 3.9192 -1.5628 49 1 5.7151 2.7910 -2.9100 50 1 5.4704 1.6313 -0.6857 51 1 4.2592 1.1112 -1.8826 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270331607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:52 Heat of formation + Delta-G solvation = -0.319884 kcal Electronic energy + Delta-G solvation = -31885.683755 eV Core-core repulsion = 27786.823104 eV Total energy + Delta-G solvation = -4098.860651 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.01498 -39.87496 -37.75268 -36.62432 -35.72820 -34.19640 -33.13558 -32.23674 -31.51135 -30.16712 -29.67709 -27.61029 -27.15353 -25.11286 -24.43397 -22.66587 -22.21713 -21.20483 -20.13322 -19.58350 -19.27800 -18.18499 -17.62152 -17.52988 -16.79313 -16.63529 -16.06501 -15.47681 -15.04699 -14.87112 -14.47965 -14.41016 -14.11344 -13.94359 -13.81088 -13.67868 -13.40254 -13.18543 -13.04105 -12.92492 -12.68340 -12.54376 -12.45122 -12.12370 -11.79331 -11.55841 -11.29346 -11.14043 -11.11568 -10.98099 -10.79386 -10.59103 -10.45972 -10.28631 -10.20479 -10.14338 -10.07307 -9.92024 -9.75937 -9.58639 -9.33829 -8.64307 -8.46754 -6.57761 -5.83046 -3.36176 2.32642 2.40215 2.61036 2.69243 2.95497 3.24468 3.34816 3.40481 3.40961 4.09060 4.16731 4.26633 4.28219 4.36298 4.45005 4.74883 4.80855 4.89972 4.97467 5.02182 5.08129 5.10872 5.23679 5.32644 5.35905 5.39555 5.46278 5.49850 5.55813 5.63086 5.77170 5.81244 5.82831 5.91609 6.03490 6.16813 6.28388 6.45002 6.45988 6.50630 6.57796 6.76478 6.82478 6.89829 6.95385 7.26618 7.40090 7.47530 7.58204 7.77237 7.92991 8.17946 8.47527 9.19040 9.78404 10.41160 11.25368 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.002460 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.993452 B =11380.452352 C =11679.988742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.204 4.204 3 C 0.214 3.786 4 N -0.601 5.601 5 C 0.518 3.482 6 O -0.533 6.533 7 C -0.109 4.109 8 H 0.093 0.907 9 C -0.135 4.135 10 C 0.111 3.889 11 N -0.725 5.725 12 C 0.519 3.481 13 O -0.553 6.553 14 C -0.137 4.137 15 C -0.096 4.096 16 C 0.144 3.856 17 C -0.135 4.135 18 C 0.148 3.852 19 N -0.590 5.590 20 C -0.261 4.261 21 H 0.060 0.940 22 C 0.012 3.988 23 N -0.900 5.900 24 Si 0.903 3.097 25 H -0.281 1.281 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.179 3.821 29 C -0.146 4.146 30 H 0.216 0.784 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.401 0.599 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.019 0.981 46 H 0.056 0.944 47 H 0.256 0.744 48 H 0.022 0.978 49 H 0.080 0.920 50 H 0.052 0.948 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.787 -16.655 13.423 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.205 4.205 3 C 0.091 3.909 4 N -0.332 5.332 5 C 0.305 3.695 6 O -0.409 6.409 7 C -0.130 4.130 8 H 0.111 0.889 9 C -0.174 4.174 10 C -0.013 4.013 11 N -0.377 5.377 12 C 0.306 3.694 13 O -0.431 6.431 14 C -0.177 4.177 15 C -0.135 4.135 16 C 0.043 3.957 17 C -0.175 4.175 18 C 0.021 3.979 19 N -0.313 5.313 20 C -0.390 4.390 21 H 0.078 0.922 22 C -0.188 4.188 23 N -0.542 5.542 24 Si 0.733 3.267 25 H -0.208 1.208 26 H -0.216 1.216 27 H -0.209 1.209 28 C 0.052 3.948 29 C -0.186 4.186 30 H 0.233 0.767 31 H 0.128 0.872 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.237 0.763 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.037 0.963 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.041 0.959 49 H 0.099 0.901 50 H 0.071 0.929 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.470 -15.790 14.077 22.434 hybrid contribution 0.093 -0.234 -1.048 1.078 sum -7.378 -16.024 13.028 21.930 Atomic orbital electron populations 1.24925 0.95884 0.99148 1.00513 1.23563 0.94896 1.01290 1.00774 1.18448 0.83707 0.86892 1.01877 1.48324 1.64347 1.14635 1.05894 1.20588 0.78175 0.88229 0.82488 1.90715 1.43917 1.30931 1.75298 1.21084 0.99143 0.96207 0.96606 0.88886 1.21811 0.97597 0.95983 1.02010 1.21778 1.02926 0.97042 0.79581 1.45965 1.32008 1.49683 1.10084 1.20609 0.82588 0.77804 0.88381 1.90760 1.74906 1.60857 1.16532 1.21984 0.97316 0.99549 0.98846 1.21038 1.01038 0.97049 0.94334 1.21258 0.95709 0.88313 0.90432 1.22355 0.96043 1.00857 0.98214 1.20893 0.91488 0.92773 0.92781 1.43954 1.10374 1.74385 1.02539 1.19032 0.98577 1.39683 0.81752 0.92190 1.25323 0.98033 0.97454 0.98014 1.69972 1.05736 1.43923 1.34605 0.86381 0.76928 0.77914 0.85523 1.20759 1.21584 1.20900 1.20660 0.89678 0.90919 0.93510 1.22588 0.96555 1.01685 0.97781 0.76739 0.87161 0.88610 0.89737 0.89891 0.90185 0.88814 0.76333 0.89157 0.88052 0.90189 0.90119 0.88505 0.92107 0.93201 0.96322 0.92510 0.93440 0.95943 0.90150 0.92915 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.73 19.25 29.55 0.57 -1.16 16 2 C -0.20 -2.10 11.32 -37.12 -0.42 -2.52 16 3 C 0.21 2.13 4.83 -6.83 -0.03 2.09 16 4 N -0.60 -7.87 2.36 -169.37 -0.40 -8.27 16 5 C 0.52 6.91 6.44 -10.98 -0.07 6.84 16 6 O -0.53 -9.43 15.71 5.56 0.09 -9.34 16 7 C -0.11 -0.97 1.30 -93.01 -0.12 -1.09 16 8 H 0.09 0.68 5.40 -51.93 -0.28 0.40 16 9 C -0.14 -0.93 4.75 -27.36 -0.13 -1.06 16 10 C 0.11 0.49 6.47 -3.66 -0.02 0.47 16 11 N -0.72 -5.03 5.27 -59.89 -0.32 -5.34 16 12 C 0.52 5.23 7.06 -11.26 -0.08 5.15 16 13 O -0.55 -8.05 17.92 5.56 0.10 -7.95 16 14 C -0.14 -1.08 5.57 -27.52 -0.15 -1.23 16 15 C -0.10 -0.92 4.47 -27.34 -0.12 -1.05 16 16 C 0.14 2.41 2.47 -67.89 -0.17 2.24 16 17 C -0.13 -2.31 4.85 -26.61 -0.13 -2.44 16 18 C 0.15 3.08 6.52 -3.71 -0.02 3.06 16 19 N -0.59 -14.36 2.95 -172.31 -0.51 -14.87 16 20 C -0.26 -6.96 9.51 -15.06 -0.14 -7.11 16 21 H 0.06 1.58 7.85 -52.48 -0.41 1.17 16 22 C 0.01 0.32 5.02 -17.43 -0.09 0.23 16 23 N -0.90 -25.71 11.48 55.49 0.64 -25.07 16 24 Si 0.90 21.16 29.57 -169.99 -5.03 16.14 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 C 0.18 4.11 5.23 -3.71 -0.02 4.09 16 29 C -0.15 -2.60 5.33 -26.61 -0.14 -2.74 16 30 H 0.22 1.33 7.80 -54.08 -0.42 0.91 16 31 H 0.11 1.16 6.48 -51.93 -0.34 0.82 16 32 H 0.10 0.64 5.95 -51.93 -0.31 0.33 16 33 H 0.08 0.49 7.23 -51.93 -0.38 0.12 16 34 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 35 H 0.08 0.27 6.71 -51.93 -0.35 -0.08 16 36 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 37 H 0.40 2.44 8.91 -40.82 -0.36 2.07 16 38 H 0.09 0.50 6.77 -51.93 -0.35 0.15 16 39 H 0.10 0.80 8.13 -51.93 -0.42 0.37 16 40 H 0.08 0.95 7.75 -51.93 -0.40 0.54 16 41 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 42 H 0.10 1.89 6.91 -51.93 -0.36 1.53 16 43 H 0.06 1.04 7.27 -51.93 -0.38 0.66 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 47 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.08 2.05 6.56 -51.93 -0.34 1.71 16 50 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.06 0.98 6.73 -51.93 -0.35 0.63 16 LS Contribution 396.53 15.07 5.98 5.98 Total: -1.00 -34.69 396.53 -8.70 -43.39 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.95 Total: 1.56 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -1.30 Total: 3.80 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.59 Total: -53.56 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.19 Total: -17.30 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.69 -8.70 -43.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270331607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.066 kcal (2) G-P(sol) polarization free energy of solvation -34.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds