Wall clock time and date at job start Wed Apr 1 2020 04:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46492 * 109.46530 * 204.15976 * 3 2 1 5 5 C 1.34778 * 120.00127 * 84.74558 * 4 3 2 6 6 O 1.21280 * 120.00367 * 175.28230 * 5 4 3 7 7 C 1.50703 * 119.99841 * 355.27501 * 5 4 3 8 8 H 1.08999 * 108.56380 * 334.76855 * 7 5 4 9 9 C 1.51770 * 108.61474 * 92.70130 * 7 5 4 10 10 C 1.52989 * 110.88363 * 188.12531 * 9 7 5 11 11 N 1.47201 * 108.66546 * 273.53477 * 10 9 7 12 12 C 1.33369 * 120.42381 * 71.95295 * 11 10 9 13 13 O 1.21281 * 119.88451 * 179.72048 * 12 11 10 14 14 C 1.51420 * 120.21971 * 359.69563 * 12 11 10 15 15 C 1.51785 * 108.61573 * 216.96687 * 7 5 4 16 16 C 1.46501 * 120.00311 * 265.00848 * 4 3 2 17 17 C 1.53048 * 109.45591 * 59.75821 * 16 4 3 18 18 C 1.53195 * 109.31268 * 178.59952 * 17 16 4 19 19 N 1.46929 * 108.76200 * 54.65550 * 18 17 16 20 20 C 1.36930 * 120.62962 * 126.40798 * 19 18 17 21 21 H 1.08005 * 119.99837 * 322.91200 * 20 19 18 22 22 C 1.38812 * 120.00452 * 142.91162 * 20 19 18 23 23 N 1.31626 * 119.99813 * 349.70587 * 22 20 19 24 24 Si 1.86801 * 120.00342 * 169.70628 * 22 20 19 25 25 H 1.48496 * 109.46990 * 60.00089 * 24 22 20 26 26 H 1.48497 * 109.47146 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47254 * 300.00096 * 24 22 20 28 28 C 1.46929 * 118.74054 * 306.37968 * 19 18 17 29 29 C 1.53038 * 109.46348 * 299.70415 * 16 4 3 30 30 H 4.40630 * 5.51461 * 180.02562 * 4 1 2 31 31 H 1.09002 * 109.46855 * 84.16252 * 3 2 1 32 32 H 1.08994 * 109.47641 * 324.16287 * 3 2 1 33 33 H 1.09004 * 109.19932 * 308.48638 * 9 7 5 34 34 H 1.09000 * 109.19799 * 67.76365 * 9 7 5 35 35 H 1.09003 * 109.60344 * 33.28706 * 10 9 7 36 36 H 1.09004 * 109.60728 * 153.78250 * 10 9 7 37 37 H 0.97000 * 119.78022 * 251.98131 * 11 10 9 38 38 H 1.09002 * 109.63135 * 48.49440 * 14 12 11 39 39 H 1.09006 * 109.63089 * 168.88136 * 14 12 11 40 40 H 1.08999 * 109.22506 * 292.39468 * 15 7 5 41 41 H 1.08998 * 109.22973 * 51.74803 * 15 7 5 42 42 H 1.09005 * 109.46359 * 179.72623 * 16 4 3 43 43 H 1.09001 * 109.49865 * 298.56657 * 17 16 4 44 44 H 1.09002 * 109.49754 * 58.66443 * 17 16 4 45 45 H 1.09000 * 109.59655 * 294.87326 * 18 17 16 46 46 H 1.08997 * 109.70287 * 174.50507 * 18 17 16 47 47 H 0.96995 * 119.99837 * 180.02562 * 23 22 20 48 48 H 1.08994 * 109.58722 * 293.82670 * 28 19 18 49 49 H 1.09001 * 109.58660 * 173.39677 * 28 19 18 50 50 H 1.08998 * 109.49517 * 301.33564 * 29 16 4 51 51 H 1.09004 * 109.49726 * 61.42900 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.2611 0.5653 5 6 3.2574 1.3977 1.9004 6 8 3.7410 2.4085 2.3644 7 6 2.7946 0.2944 2.8168 8 1 2.0231 -0.2810 2.3051 9 6 3.9703 -0.6209 3.1053 10 6 3.5166 -1.8684 3.8659 11 7 3.5117 -1.5659 5.3065 12 6 2.5816 -0.7627 5.8248 13 8 2.5838 -0.5242 7.0139 14 6 1.5236 -0.1472 4.9335 15 6 2.1855 0.9195 4.0586 16 6 3.4813 2.3752 -0.3202 17 6 2.2514 2.7813 -1.1355 18 6 2.6092 3.9689 -2.0347 19 7 3.7799 3.6108 -2.8470 20 6 3.7466 3.7321 -4.2105 21 1 2.8404 3.5014 -4.7511 22 6 4.8772 4.1514 -4.8980 23 7 5.9119 4.6249 -4.2363 24 14 4.9304 4.0440 -6.7621 25 1 3.8356 4.8664 -7.3367 26 1 6.2381 4.5510 -7.2501 27 1 4.7596 2.6298 -7.1815 28 6 4.9874 3.1206 -2.1684 29 6 4.6029 1.9428 -1.2674 30 1 -1.0502 -0.0004 0.0000 31 1 3.0094 -0.1037 -1.0224 32 1 3.0098 -0.8322 0.6016 33 1 4.4293 -0.9225 2.1637 34 1 4.7047 -0.0830 3.7048 35 1 2.5119 -2.1458 3.5470 36 1 4.2058 -2.6890 3.6668 37 1 4.1895 -1.9531 5.8823 38 1 1.0838 -0.9183 4.3009 39 1 0.7473 0.3090 5.5479 40 1 2.9684 1.4174 4.6307 41 1 1.4374 1.6541 3.7607 42 1 3.8171 3.2229 0.2772 43 1 1.9300 1.9418 -1.7520 44 1 1.4451 3.0668 -0.4598 45 1 2.8438 4.8366 -1.4182 46 1 1.7684 4.2015 -2.6882 47 1 6.7018 4.9182 -4.7167 48 1 5.4159 3.9192 -1.5628 49 1 5.7151 2.7910 -2.9100 50 1 5.4704 1.6313 -0.6857 51 1 4.2592 1.1112 -1.8826 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270331607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:51 Heat of formation + Delta-G solvation = -23.742865 kcal Electronic energy + Delta-G solvation = -31886.699452 eV Core-core repulsion = 27786.823104 eV Total energy + Delta-G solvation = -4099.876348 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.91225 -40.79900 -39.16373 -37.49423 -37.01617 -35.03154 -34.45044 -33.43183 -32.37928 -31.72991 -31.30892 -28.33295 -28.11810 -26.76981 -25.18640 -24.04571 -23.84899 -22.28456 -20.87004 -20.77542 -20.39608 -19.18432 -18.52563 -18.40414 -18.26054 -17.55444 -17.15620 -16.75033 -16.34572 -15.89340 -15.65404 -15.39916 -15.24363 -15.14025 -14.82858 -14.80834 -14.68372 -14.38634 -14.20751 -14.12136 -13.87147 -13.53841 -13.24606 -13.19402 -12.99004 -12.91155 -12.68007 -12.59951 -12.44944 -12.19521 -12.04701 -11.95485 -11.90137 -11.73996 -11.57364 -11.36202 -11.26807 -11.04060 -10.88194 -10.69190 -10.57513 -10.09227 -9.79782 -8.58447 -7.88480 -5.45910 1.44126 1.48338 1.49723 1.56919 1.59358 1.66543 1.99980 2.36243 2.40833 2.50311 3.28634 3.36369 3.46173 3.58534 3.64547 3.66407 3.81197 3.86355 4.06369 4.16144 4.21513 4.26802 4.33081 4.38285 4.45246 4.46616 4.47647 4.53997 4.63339 4.63820 4.74981 4.80736 4.84187 4.94211 4.97216 5.02800 5.04563 5.13664 5.14935 5.18918 5.24857 5.29229 5.42313 5.54838 5.65074 5.66682 5.90866 6.27971 6.38123 6.42758 6.79013 7.13112 7.15440 7.24918 7.80960 8.39511 9.17711 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.002460 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.993452 B =11380.452352 C =11679.988742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.235 4.235 3 C 0.208 3.792 4 N -0.597 5.597 5 C 0.514 3.486 6 O -0.586 6.586 7 C -0.095 4.095 8 H 0.123 0.877 9 C -0.135 4.135 10 C 0.112 3.888 11 N -0.715 5.715 12 C 0.512 3.488 13 O -0.609 6.609 14 C -0.126 4.126 15 C -0.092 4.092 16 C 0.154 3.846 17 C -0.113 4.113 18 C 0.144 3.856 19 N -0.606 5.606 20 C -0.269 4.269 21 H 0.065 0.935 22 C -0.042 4.042 23 N -0.935 5.935 24 Si 0.970 3.030 25 H -0.276 1.276 26 H -0.296 1.296 27 H -0.272 1.272 28 C 0.186 3.814 29 C -0.127 4.127 30 H 0.241 0.759 31 H 0.107 0.893 32 H 0.137 0.863 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.404 0.596 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.002 0.998 46 H 0.059 0.941 47 H 0.251 0.749 48 H -0.012 1.012 49 H 0.051 0.949 50 H 0.064 0.936 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.809 -20.374 12.643 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.236 4.236 3 C 0.088 3.912 4 N -0.327 5.327 5 C 0.303 3.697 6 O -0.465 6.465 7 C -0.116 4.116 8 H 0.141 0.859 9 C -0.174 4.174 10 C -0.010 4.010 11 N -0.366 5.366 12 C 0.300 3.700 13 O -0.492 6.492 14 C -0.166 4.166 15 C -0.131 4.131 16 C 0.051 3.949 17 C -0.153 4.153 18 C 0.018 3.982 19 N -0.329 5.329 20 C -0.399 4.399 21 H 0.083 0.917 22 C -0.239 4.239 23 N -0.580 5.580 24 Si 0.797 3.203 25 H -0.201 1.201 26 H -0.222 1.222 27 H -0.197 1.197 28 C 0.060 3.940 29 C -0.167 4.167 30 H 0.257 0.743 31 H 0.125 0.875 32 H 0.154 0.846 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.146 0.854 37 H 0.241 0.759 38 H 0.145 0.855 39 H 0.117 0.883 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.020 0.980 46 H 0.078 0.922 47 H 0.060 0.940 48 H 0.006 0.994 49 H 0.069 0.931 50 H 0.082 0.918 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.516 -19.576 13.267 25.491 hybrid contribution 0.697 0.983 -0.812 1.453 sum -8.820 -18.593 12.455 24.054 Atomic orbital electron populations 1.25648 0.96689 0.97565 0.99144 1.23648 0.95210 1.02685 1.02084 1.18752 0.84068 0.86043 1.02383 1.48223 1.64140 1.14811 1.05497 1.21444 0.76954 0.88562 0.82693 1.90702 1.46253 1.33411 1.76160 1.21118 1.00595 0.94878 0.95047 0.85915 1.21864 0.96155 0.96327 1.03009 1.22056 1.05361 0.96439 0.77191 1.46033 1.30864 1.48170 1.11489 1.21023 0.83331 0.77812 0.87863 1.90733 1.76440 1.63027 1.18956 1.21928 0.96483 0.99690 0.98501 1.20950 1.00034 0.97490 0.94605 1.20785 0.95038 0.88903 0.90181 1.22084 0.96365 0.99253 0.97630 1.20996 0.90360 0.93999 0.92869 1.44197 1.11350 1.74959 1.02433 1.19385 0.98666 1.38840 0.83029 0.91738 1.26106 0.97800 0.97546 1.02419 1.70150 1.06234 1.45430 1.36149 0.85323 0.76502 0.78287 0.80171 1.20139 1.22210 1.19704 1.20428 0.88908 0.91729 0.92960 1.22299 0.97550 0.99557 0.97275 0.74296 0.87482 0.84563 0.87792 0.92430 0.87635 0.85418 0.75914 0.85495 0.88262 0.93436 0.90835 0.91914 0.91120 0.91997 0.98046 0.92243 0.93998 0.99416 0.93056 0.91781 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 19.25 74.32 1.43 -0.98 16 2 C -0.24 -3.84 11.32 31.13 0.35 -3.49 16 3 C 0.21 3.34 4.83 84.58 0.41 3.75 16 4 N -0.60 -14.51 2.36 -808.15 -1.91 -16.41 16 5 C 0.51 13.15 6.44 87.66 0.56 13.71 16 6 O -0.59 -21.40 15.71 -3.03 -0.05 -21.45 16 7 C -0.10 -1.44 1.30 -12.34 -0.02 -1.45 16 8 H 0.12 1.16 5.40 -2.39 -0.01 1.15 16 9 C -0.13 -1.41 4.75 30.19 0.14 -1.27 16 10 C 0.11 0.47 6.47 86.24 0.56 1.03 16 11 N -0.72 -8.16 5.27 -462.58 -2.44 -10.59 16 12 C 0.51 9.68 7.06 88.10 0.62 10.31 16 13 O -0.61 -17.99 17.92 -3.03 -0.05 -18.05 16 14 C -0.13 -1.71 5.57 30.08 0.17 -1.54 16 15 C -0.09 -1.67 4.47 30.20 0.14 -1.54 16 16 C 0.15 5.12 2.47 45.02 0.11 5.23 16 17 C -0.11 -3.78 4.85 30.68 0.15 -3.63 16 18 C 0.14 6.09 6.52 86.36 0.56 6.65 16 19 N -0.61 -30.15 2.95 -699.08 -2.06 -32.21 16 20 C -0.27 -14.50 9.51 84.03 0.80 -13.71 16 21 H 0.07 3.37 7.85 -2.91 -0.02 3.34 16 22 C -0.04 -2.33 5.02 84.86 0.43 -1.91 16 23 N -0.94 -55.29 11.48 21.65 0.25 -55.04 16 24 Si 0.97 43.79 29.57 68.60 2.03 45.82 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 C 0.19 8.90 5.23 86.36 0.45 9.35 16 29 C -0.13 -4.49 5.33 30.67 0.16 -4.33 16 30 H 0.24 1.79 7.80 -4.41 -0.03 1.76 16 31 H 0.11 1.84 6.48 -2.39 -0.02 1.82 16 32 H 0.14 1.04 5.95 -2.39 -0.01 1.03 16 33 H 0.10 0.73 7.23 -2.39 -0.02 0.72 16 34 H 0.06 0.94 8.05 -2.39 -0.02 0.92 16 35 H 0.11 0.02 6.71 -2.39 -0.02 0.00 16 36 H 0.13 -0.19 8.14 -2.38 -0.02 -0.21 16 37 H 0.40 4.14 8.91 -92.71 -0.83 3.31 16 38 H 0.13 0.78 6.77 -2.39 -0.02 0.76 16 39 H 0.10 1.42 8.13 -2.38 -0.02 1.40 16 40 H 0.05 1.17 7.75 -2.39 -0.02 1.15 16 41 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 42 H 0.06 2.55 6.91 -2.38 -0.02 2.53 16 43 H 0.07 2.25 7.27 -2.39 -0.02 2.23 16 44 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 47 H 0.25 14.41 8.31 -92.71 -0.77 13.63 16 48 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 49 H 0.05 2.72 6.56 -2.39 -0.02 2.71 16 50 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 51 H 0.07 2.39 6.73 -2.38 -0.02 2.38 16 Total: -1.00 -81.96 396.53 2.91 -79.05 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.12 Total: 12.70 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 7.03 Total: 16.19 kcal Atomic # 7 Polarization: -108.10 SS G_CDS: -6.16 Total: -114.26 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.10 Total: -39.49 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -81.96 2.91 -79.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270331607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.303 kcal (2) G-P(sol) polarization free energy of solvation -81.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds