Wall clock time and date at job start Wed Apr 1 2020 04:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47228 * 2 1 4 4 N 1.46502 * 109.47103 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00289 * 269.99585 * 4 3 2 6 6 H 1.08004 * 119.99687 * 37.48624 * 5 4 3 7 7 C 1.38811 * 120.00496 * 217.48658 * 5 4 3 8 8 N 1.31627 * 119.99640 * 17.43748 * 7 5 4 9 9 Si 1.86796 * 120.00343 * 197.43858 * 7 5 4 10 10 H 1.48502 * 109.47015 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47118 * 119.99821 * 9 7 5 12 12 H 1.48499 * 109.47126 * 239.99801 * 9 7 5 13 13 C 1.46504 * 120.00170 * 89.99910 * 4 3 2 14 14 C 1.53003 * 109.47106 * 273.63692 * 13 4 3 15 15 N 1.46493 * 109.47457 * 180.02562 * 14 13 4 16 16 C 1.34775 * 120.00236 * 179.97438 * 15 14 13 17 17 O 1.21550 * 119.99976 * 359.97438 * 16 15 14 18 18 C 1.47857 * 120.00046 * 179.97438 * 16 15 14 19 19 C 1.39503 * 120.11236 * 354.51316 * 18 16 15 20 20 C 1.38592 * 119.77682 * 180.02562 * 19 18 16 21 21 N 1.39959 * 119.99463 * 179.97438 * 20 19 18 22 22 C 1.34781 * 119.99862 * 144.39966 * 21 20 19 23 23 C 1.50703 * 119.99891 * 185.18698 * 22 21 20 24 24 O 1.21289 * 119.99647 * 5.19186 * 22 21 20 25 25 C 1.38992 * 120.00707 * 359.97438 * 20 19 18 26 26 C 1.38211 * 120.21601 * 0.29386 * 25 20 19 27 27 C 1.38017 * 120.22819 * 359.45045 * 26 25 20 28 28 C 1.50696 * 120.00586 * 180.25270 * 27 26 25 29 29 H 1.09009 * 109.46927 * 60.00579 * 1 2 3 30 30 H 1.09000 * 109.47230 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47316 * 300.00626 * 1 2 3 32 32 H 1.09002 * 109.47747 * 239.99196 * 2 1 3 33 33 H 1.09009 * 109.46927 * 119.99421 * 2 1 3 34 34 H 1.08997 * 109.47484 * 59.99476 * 3 2 1 35 35 H 1.09004 * 109.46768 * 299.99084 * 3 2 1 36 36 H 0.96992 * 119.99728 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47495 * 153.63284 * 13 4 3 38 38 H 1.09009 * 109.47000 * 33.62898 * 13 4 3 39 39 H 1.08997 * 109.47276 * 59.99459 * 14 13 4 40 40 H 1.09003 * 109.46420 * 299.99878 * 14 13 4 41 41 H 0.97003 * 119.99957 * 359.97438 * 15 14 13 42 42 H 1.07997 * 120.10886 * 0.03746 * 19 18 16 43 43 H 0.96998 * 120.00228 * 324.40127 * 21 20 19 44 44 H 1.08998 * 109.46882 * 0.02562 * 23 22 21 45 45 H 1.09000 * 109.46515 * 120.00163 * 23 22 21 46 46 H 1.08997 * 109.47040 * 239.99957 * 23 22 21 47 47 H 1.07995 * 119.88557 * 180.02562 * 25 20 19 48 48 H 1.08004 * 119.88290 * 179.72676 * 26 25 20 49 49 H 1.09001 * 109.47118 * 264.10262 * 28 27 26 50 50 H 1.08997 * 109.47316 * 24.10154 * 28 27 26 51 51 H 1.09004 * 109.47559 * 144.09898 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.4427 1.1867 6 1 3.8161 0.8736 2.0255 7 6 5.3623 2.1742 1.3113 8 7 5.6416 3.1229 0.4426 9 14 6.5446 1.8125 2.7115 10 1 6.0029 0.7084 3.5439 11 1 7.8626 1.4134 2.1558 12 1 6.7078 3.0284 3.5482 13 6 4.2380 1.4422 -1.2678 14 6 4.4140 0.0025 -1.7549 15 7 5.1476 0.0022 -3.0230 16 6 5.4212 -1.1628 -3.6429 17 8 5.0597 -2.2133 -3.1497 18 6 6.1611 -1.1631 -4.9230 19 6 6.4771 0.0429 -5.5490 20 6 7.1704 0.0345 -6.7491 21 7 7.4893 1.2417 -7.3813 22 6 8.6543 1.3663 -8.0475 23 6 9.0514 2.6990 -8.6283 24 8 9.3830 0.4057 -8.1796 25 6 7.5489 -1.1727 -7.3247 26 6 7.2310 -2.3677 -6.7073 27 6 6.5455 -2.3700 -5.5094 28 6 6.2064 -3.6757 -4.8378 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9562 -0.8901 36 1 6.4614 3.6338 0.5293 37 1 5.2170 1.8986 -1.1218 38 1 3.6790 2.0113 -2.0107 39 1 3.4350 -0.4539 -1.9009 40 1 4.9730 -0.5665 -1.0120 41 1 5.4364 0.8404 -3.4164 42 1 6.1826 0.9798 -5.0999 43 1 6.8720 1.9887 -7.3400 44 1 8.2780 3.4354 -8.4100 45 1 9.9945 3.0212 -8.1867 46 1 9.1693 2.6043 -9.7077 47 1 8.0895 -1.1769 -8.2596 48 1 7.5240 -3.3027 -7.1616 49 1 5.1911 -3.9687 -5.1048 50 1 6.9049 -4.4454 -5.1662 51 1 6.2781 -3.5576 -3.7565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317544990.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:14 Heat of formation + Delta-G solvation = -33.076230 kcal Electronic energy + Delta-G solvation = -30406.844253 eV Core-core repulsion = 26306.563180 eV Total energy + Delta-G solvation = -4100.281073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.87910 -39.75981 -38.05006 -36.52863 -35.26861 -34.34764 -32.94520 -31.95927 -31.57460 -30.63660 -29.87520 -28.13073 -26.28012 -25.59113 -24.17393 -23.24641 -21.93067 -21.45337 -20.71568 -20.31786 -19.85498 -18.20583 -17.48923 -16.76154 -16.18701 -15.89175 -15.63733 -15.29958 -15.22893 -14.83266 -14.60544 -14.40591 -14.28186 -13.96224 -13.79893 -13.44617 -13.36382 -13.04308 -13.00729 -12.78900 -12.75943 -12.50091 -12.24030 -11.98980 -11.91473 -11.62517 -11.54257 -11.44143 -11.18002 -10.96049 -10.77899 -10.46338 -10.42143 -10.35897 -10.19000 -10.10162 -9.87702 -9.73116 -9.30794 -9.09168 -8.61961 -8.46565 -8.18383 -6.65177 -5.86150 -3.47064 0.84912 1.08894 2.22582 2.73299 3.06565 3.31750 3.41120 3.44018 3.53243 3.83696 4.35094 4.43053 4.64259 4.74001 4.75786 4.92858 4.98383 5.15472 5.22549 5.25847 5.28437 5.43885 5.45978 5.62168 5.64237 5.74353 5.77168 5.89986 5.97760 6.01418 6.02438 6.09958 6.20163 6.23044 6.26914 6.34347 6.39903 6.50444 6.57763 6.61079 6.65566 6.81604 6.89451 6.95539 7.00386 7.04043 7.16324 7.54939 7.75885 7.76300 7.89807 8.45247 8.54910 9.12016 9.73127 10.30157 11.14083 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009417 B = 0.002717 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2972.510449 B =10302.787061 C =11504.762538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.147 4.147 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.256 4.256 6 H 0.063 0.937 7 C 0.011 3.989 8 N -0.892 5.892 9 Si 0.899 3.101 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.136 3.864 14 C 0.096 3.904 15 N -0.714 5.714 16 C 0.550 3.450 17 O -0.536 6.536 18 C -0.115 4.115 19 C -0.105 4.105 20 C 0.123 3.877 21 N -0.672 5.672 22 C 0.511 3.489 23 C -0.170 4.170 24 O -0.530 6.530 25 C -0.094 4.094 26 C -0.116 4.116 27 C -0.035 4.035 28 C -0.121 4.121 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.032 0.968 36 H 0.254 0.746 37 H 0.105 0.895 38 H 0.026 0.974 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.395 0.605 42 H 0.132 0.868 43 H 0.413 0.587 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.140 0.860 48 H 0.131 0.869 49 H 0.073 0.927 50 H 0.054 0.946 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 -2.093 -18.526 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.386 4.386 6 H 0.080 0.920 7 C -0.189 4.189 8 N -0.535 5.535 9 Si 0.729 3.271 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.008 3.992 14 C -0.029 4.029 15 N -0.364 5.364 16 C 0.337 3.663 17 O -0.415 6.415 18 C -0.119 4.119 19 C -0.126 4.126 20 C 0.029 3.971 21 N -0.318 5.318 22 C 0.299 3.701 23 C -0.229 4.229 24 O -0.406 6.406 25 C -0.114 4.114 26 C -0.135 4.135 27 C -0.037 4.037 28 C -0.177 4.177 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.122 0.878 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.229 0.771 42 H 0.149 0.851 43 H 0.249 0.751 44 H 0.099 0.901 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.158 0.842 48 H 0.149 0.851 49 H 0.092 0.908 50 H 0.073 0.927 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.731 -3.295 -18.221 18.597 hybrid contribution 0.537 0.743 0.484 1.037 sum 2.268 -2.552 -17.737 18.063 Atomic orbital electron populations 1.21719 0.97320 1.00424 1.00988 1.22245 0.93878 1.00944 1.01640 1.20942 0.85048 0.92935 0.98980 1.43610 0.99428 1.85048 1.01861 1.19116 1.05553 1.22952 0.90972 0.91984 1.25211 1.00685 0.95030 0.97927 1.69918 1.25350 1.20605 1.37657 0.86280 0.81061 0.77866 0.81935 1.19981 1.21403 1.21552 1.21110 1.01115 0.90365 0.86578 1.22559 0.94824 1.02964 0.82596 1.46088 1.57435 1.07951 1.24971 1.18190 0.79739 0.84298 0.84046 1.90698 1.53040 1.30705 1.67059 1.19712 1.02730 0.93107 0.96363 1.21068 1.00212 0.98058 0.93291 1.17545 1.00687 0.85905 0.92943 1.43638 1.20916 1.14197 1.53081 1.21034 0.80026 0.91485 0.77518 1.21859 1.04210 0.93573 1.03277 1.90732 1.51874 1.40553 1.57413 1.21393 0.98771 0.90653 1.00573 1.20956 0.99381 0.98040 0.95095 1.20079 0.94700 0.95058 0.93852 1.21086 1.01197 0.92036 1.03340 0.93465 0.93791 0.93220 0.92760 0.92386 0.93308 0.94967 0.93569 0.87774 0.95593 0.92719 0.91732 0.77082 0.85059 0.75096 0.90147 0.88191 0.88404 0.84194 0.85129 0.90810 0.92686 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.15 0.37 -1.78 16 2 C -0.15 -2.65 6.19 -26.74 -0.17 -2.82 16 3 C 0.15 3.00 5.71 -4.04 -0.02 2.98 16 4 N -0.58 -13.76 2.43 -173.23 -0.42 -14.18 16 5 C -0.26 -6.75 9.49 -15.06 -0.14 -6.89 16 6 H 0.06 1.65 7.89 -52.48 -0.41 1.24 16 7 C 0.01 0.30 5.02 -17.43 -0.09 0.21 16 8 N -0.89 -24.38 11.26 55.49 0.63 -23.75 16 9 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.14 2.95 5.40 -4.04 -0.02 2.93 16 14 C 0.10 1.90 5.91 -4.04 -0.02 1.87 16 15 N -0.71 -11.91 5.50 -61.25 -0.34 -12.25 16 16 C 0.55 9.39 7.71 -12.32 -0.10 9.30 16 17 O -0.54 -10.58 13.31 5.32 0.07 -10.51 16 18 C -0.12 -1.65 5.87 -104.99 -0.62 -2.27 16 19 C -0.11 -1.25 9.45 -38.98 -0.37 -1.62 16 20 C 0.12 1.39 6.29 -83.74 -0.53 0.86 16 21 N -0.67 -5.63 5.33 -9.89 -0.05 -5.68 16 22 C 0.51 4.69 7.78 -10.98 -0.09 4.61 16 23 C -0.17 -0.80 10.39 36.01 0.37 -0.43 16 24 O -0.53 -7.10 14.54 5.55 0.08 -7.02 16 25 C -0.09 -1.13 8.69 -39.31 -0.34 -1.47 16 26 C -0.12 -1.37 9.65 -39.67 -0.38 -1.75 16 27 C -0.04 -0.48 5.91 -104.20 -0.62 -1.09 16 28 C -0.12 -1.58 8.75 36.00 0.32 -1.27 16 29 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 1.01 6.04 -51.93 -0.31 0.69 16 33 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 34 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 35 H 0.03 0.62 7.93 -51.93 -0.41 0.21 16 36 H 0.25 6.71 8.31 -40.82 -0.34 6.38 16 37 H 0.10 2.56 5.39 -51.93 -0.28 2.28 16 38 H 0.03 0.53 7.94 -51.92 -0.41 0.12 16 39 H 0.05 1.10 6.06 -51.93 -0.31 0.79 16 40 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.39 5.61 6.54 -40.82 -0.27 5.34 16 42 H 0.13 1.29 6.44 -52.49 -0.34 0.95 16 43 H 0.41 2.07 8.67 -40.82 -0.35 1.72 16 44 H 0.08 0.19 7.92 -51.93 -0.41 -0.22 16 45 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.14 1.69 6.23 -52.49 -0.33 1.37 16 48 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 49 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 50 H 0.05 0.59 8.04 -51.93 -0.42 0.17 16 51 H 0.10 1.55 5.79 -51.93 -0.30 1.25 16 LS Contribution 411.86 15.07 6.21 6.21 Total: -1.00 -32.71 411.86 -9.22 -41.93 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.92 Total: 7.71 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -2.44 Total: 1.37 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.19 Total: -55.86 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.15 Total: -17.53 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.71 -9.22 -41.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317544990.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.849 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds