Wall clock time and date at job start Wed Apr 1 2020 04:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47228 * 2 1 4 4 N 1.46502 * 109.47103 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00289 * 269.99585 * 4 3 2 6 6 H 1.08004 * 119.99687 * 37.48624 * 5 4 3 7 7 C 1.38811 * 120.00496 * 217.48658 * 5 4 3 8 8 N 1.31627 * 119.99640 * 17.43748 * 7 5 4 9 9 Si 1.86796 * 120.00343 * 197.43858 * 7 5 4 10 10 H 1.48502 * 109.47015 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47118 * 119.99821 * 9 7 5 12 12 H 1.48499 * 109.47126 * 239.99801 * 9 7 5 13 13 C 1.46504 * 120.00170 * 89.99910 * 4 3 2 14 14 C 1.53003 * 109.47106 * 273.63692 * 13 4 3 15 15 N 1.46493 * 109.47457 * 180.02562 * 14 13 4 16 16 C 1.34775 * 120.00236 * 179.97438 * 15 14 13 17 17 O 1.21550 * 119.99976 * 359.97438 * 16 15 14 18 18 C 1.47857 * 120.00046 * 179.97438 * 16 15 14 19 19 C 1.39503 * 120.11236 * 354.51316 * 18 16 15 20 20 C 1.38592 * 119.77682 * 180.02562 * 19 18 16 21 21 N 1.39959 * 119.99463 * 179.97438 * 20 19 18 22 22 C 1.34781 * 119.99862 * 144.39966 * 21 20 19 23 23 C 1.50703 * 119.99891 * 185.18698 * 22 21 20 24 24 O 1.21289 * 119.99647 * 5.19186 * 22 21 20 25 25 C 1.38992 * 120.00707 * 359.97438 * 20 19 18 26 26 C 1.38211 * 120.21601 * 0.29386 * 25 20 19 27 27 C 1.38017 * 120.22819 * 359.45045 * 26 25 20 28 28 C 1.50696 * 120.00586 * 180.25270 * 27 26 25 29 29 H 1.09009 * 109.46927 * 60.00579 * 1 2 3 30 30 H 1.09000 * 109.47230 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47316 * 300.00626 * 1 2 3 32 32 H 1.09002 * 109.47747 * 239.99196 * 2 1 3 33 33 H 1.09009 * 109.46927 * 119.99421 * 2 1 3 34 34 H 1.08997 * 109.47484 * 59.99476 * 3 2 1 35 35 H 1.09004 * 109.46768 * 299.99084 * 3 2 1 36 36 H 0.96992 * 119.99728 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47495 * 153.63284 * 13 4 3 38 38 H 1.09009 * 109.47000 * 33.62898 * 13 4 3 39 39 H 1.08997 * 109.47276 * 59.99459 * 14 13 4 40 40 H 1.09003 * 109.46420 * 299.99878 * 14 13 4 41 41 H 0.97003 * 119.99957 * 359.97438 * 15 14 13 42 42 H 1.07997 * 120.10886 * 0.03746 * 19 18 16 43 43 H 0.96998 * 120.00228 * 324.40127 * 21 20 19 44 44 H 1.08998 * 109.46882 * 0.02562 * 23 22 21 45 45 H 1.09000 * 109.46515 * 120.00163 * 23 22 21 46 46 H 1.08997 * 109.47040 * 239.99957 * 23 22 21 47 47 H 1.07995 * 119.88557 * 180.02562 * 25 20 19 48 48 H 1.08004 * 119.88290 * 179.72676 * 26 25 20 49 49 H 1.09001 * 109.47118 * 264.10262 * 28 27 26 50 50 H 1.08997 * 109.47316 * 24.10154 * 28 27 26 51 51 H 1.09004 * 109.47559 * 144.09898 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.4427 1.1867 6 1 3.8161 0.8736 2.0255 7 6 5.3623 2.1742 1.3113 8 7 5.6416 3.1229 0.4426 9 14 6.5446 1.8125 2.7115 10 1 6.0029 0.7084 3.5439 11 1 7.8626 1.4134 2.1558 12 1 6.7078 3.0284 3.5482 13 6 4.2380 1.4422 -1.2678 14 6 4.4140 0.0025 -1.7549 15 7 5.1476 0.0022 -3.0230 16 6 5.4212 -1.1628 -3.6429 17 8 5.0597 -2.2133 -3.1497 18 6 6.1611 -1.1631 -4.9230 19 6 6.4771 0.0429 -5.5490 20 6 7.1704 0.0345 -6.7491 21 7 7.4893 1.2417 -7.3813 22 6 8.6543 1.3663 -8.0475 23 6 9.0514 2.6990 -8.6283 24 8 9.3830 0.4057 -8.1796 25 6 7.5489 -1.1727 -7.3247 26 6 7.2310 -2.3677 -6.7073 27 6 6.5455 -2.3700 -5.5094 28 6 6.2064 -3.6757 -4.8378 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9562 -0.8901 36 1 6.4614 3.6338 0.5293 37 1 5.2170 1.8986 -1.1218 38 1 3.6790 2.0113 -2.0107 39 1 3.4350 -0.4539 -1.9009 40 1 4.9730 -0.5665 -1.0120 41 1 5.4364 0.8404 -3.4164 42 1 6.1826 0.9798 -5.0999 43 1 6.8720 1.9887 -7.3400 44 1 8.2780 3.4354 -8.4100 45 1 9.9945 3.0212 -8.1867 46 1 9.1693 2.6043 -9.7077 47 1 8.0895 -1.1769 -8.2596 48 1 7.5240 -3.3027 -7.1616 49 1 5.1911 -3.9687 -5.1048 50 1 6.9049 -4.4454 -5.1662 51 1 6.2781 -3.5576 -3.7565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317544990.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:13 Heat of formation + Delta-G solvation = -53.242053 kcal Electronic energy + Delta-G solvation = -30407.718709 eV Core-core repulsion = 26306.563180 eV Total energy + Delta-G solvation = -4101.155529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.80987 -40.87334 -39.16814 -38.22403 -36.23458 -35.73439 -34.63269 -32.97880 -32.76320 -32.18034 -30.50281 -29.66340 -27.34059 -27.26647 -25.52006 -24.58599 -22.96445 -22.60294 -22.16024 -21.79410 -21.07998 -19.28403 -18.62643 -18.21892 -17.29393 -17.08979 -16.80236 -16.69951 -16.46954 -16.32028 -15.91672 -15.64858 -15.50474 -15.28265 -14.84696 -14.66771 -14.63479 -14.51730 -14.25054 -14.00681 -13.48479 -13.36562 -13.33749 -13.11684 -13.08799 -12.93918 -12.90610 -12.86597 -12.65276 -12.50965 -12.44291 -12.18414 -12.02443 -11.85962 -11.66061 -11.33132 -11.30844 -11.05909 -10.62854 -10.55064 -10.17031 -9.91923 -9.12550 -8.58599 -7.85502 -5.50192 -0.20957 0.16470 1.42397 1.47304 1.48425 1.55728 1.85210 2.03991 2.19460 2.49791 2.76651 3.23237 3.57744 3.70507 3.78817 3.84205 3.94313 4.15016 4.20902 4.29446 4.33761 4.38973 4.40840 4.53429 4.54011 4.66455 4.67907 4.69030 4.73193 4.82269 4.83797 4.86667 5.00410 5.00684 5.10638 5.12808 5.16232 5.24341 5.26513 5.29420 5.34494 5.43759 5.44499 5.58672 5.63108 5.65729 5.77054 5.87952 6.40510 6.45216 6.56682 7.09243 7.14293 7.21350 7.82595 8.33811 9.10518 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009417 B = 0.002717 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2972.510449 B =10302.787061 C =11504.762538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.266 4.266 6 H 0.052 0.948 7 C -0.030 4.030 8 N -0.913 5.913 9 Si 0.952 3.048 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.144 3.856 14 C 0.119 3.881 15 N -0.708 5.708 16 C 0.549 3.451 17 O -0.568 6.568 18 C -0.133 4.133 19 C -0.101 4.101 20 C 0.123 3.877 21 N -0.662 5.662 22 C 0.505 3.495 23 C -0.162 4.162 24 O -0.577 6.577 25 C -0.098 4.098 26 C -0.111 4.111 27 C -0.049 4.049 28 C -0.115 4.115 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.047 0.953 36 H 0.254 0.746 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.053 0.947 40 H 0.030 0.970 41 H 0.408 0.592 42 H 0.151 0.849 43 H 0.430 0.570 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.110 0.890 47 H 0.141 0.859 48 H 0.154 0.846 49 H 0.071 0.929 50 H 0.078 0.922 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.125 -1.249 -20.288 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.177 4.177 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.396 4.396 6 H 0.069 0.931 7 C -0.227 4.227 8 N -0.557 5.557 9 Si 0.780 3.220 10 H -0.198 1.198 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.017 3.983 14 C -0.007 4.007 15 N -0.359 5.359 16 C 0.338 3.662 17 O -0.449 6.449 18 C -0.137 4.137 19 C -0.122 4.122 20 C 0.029 3.971 21 N -0.309 5.309 22 C 0.297 3.703 23 C -0.221 4.221 24 O -0.456 6.456 25 C -0.118 4.118 26 C -0.129 4.129 27 C -0.051 4.051 28 C -0.171 4.171 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.245 0.755 42 H 0.168 0.832 43 H 0.270 0.730 44 H 0.128 0.872 45 H 0.121 0.879 46 H 0.128 0.872 47 H 0.158 0.842 48 H 0.172 0.828 49 H 0.090 0.910 50 H 0.097 0.903 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.507 -2.406 -20.003 20.203 hybrid contribution 0.593 0.485 0.958 1.226 sum 2.099 -1.921 -19.045 19.257 Atomic orbital electron populations 1.21654 0.94270 1.01750 1.02021 1.22072 0.96461 0.98812 1.00308 1.21050 0.83298 0.94458 0.99170 1.43839 1.00864 1.85364 1.01700 1.19231 1.06149 1.22509 0.91737 0.93063 1.25757 1.01841 0.95169 0.99944 1.70008 1.25600 1.21237 1.38823 0.85460 0.79092 0.77607 0.79811 1.19820 1.21748 1.21260 1.20956 0.99870 0.91123 0.86338 1.22031 0.94435 1.01122 0.83139 1.45898 1.57286 1.08837 1.23924 1.18639 0.79263 0.83587 0.84739 1.90689 1.54336 1.31768 1.68132 1.19560 1.03966 0.94605 0.95556 1.21169 0.99772 0.97925 0.93293 1.17645 0.99794 0.86991 0.92713 1.43661 1.21253 1.13749 1.52242 1.21901 0.79336 0.92504 0.76607 1.21906 1.05194 0.91359 1.03604 1.90712 1.53217 1.42473 1.59179 1.21557 0.98479 0.91126 1.00643 1.21155 0.98388 0.99135 0.94266 1.20204 0.95414 0.94807 0.94634 1.20985 1.01821 0.92912 1.01414 0.92062 0.92347 0.92563 0.93444 0.94365 0.94225 0.93502 0.93705 0.90220 0.94038 0.92903 0.95195 0.75515 0.83167 0.73008 0.87243 0.87859 0.87201 0.84177 0.82800 0.91036 0.90283 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.91 71.98 0.71 -3.09 16 2 C -0.14 -4.87 6.19 30.59 0.19 -4.68 16 3 C 0.15 5.89 5.71 86.38 0.49 6.39 16 4 N -0.60 -28.63 2.43 -701.98 -1.71 -30.34 16 5 C -0.27 -14.25 9.49 84.03 0.80 -13.46 16 6 H 0.05 2.80 7.89 -2.91 -0.02 2.78 16 7 C -0.03 -1.59 5.02 84.86 0.43 -1.16 16 8 N -0.91 -50.23 11.26 21.65 0.24 -49.98 16 9 Si 0.95 44.08 29.59 68.60 2.03 46.11 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 13 C 0.14 6.31 5.40 86.38 0.47 6.78 16 14 C 0.12 4.82 5.91 86.38 0.51 5.33 16 15 N -0.71 -23.72 5.50 -465.97 -2.57 -26.28 16 16 C 0.55 18.99 7.71 86.79 0.67 19.66 16 17 O -0.57 -23.18 13.31 -3.87 -0.05 -23.23 16 18 C -0.13 -3.76 5.87 -20.10 -0.12 -3.88 16 19 C -0.10 -2.25 9.45 22.66 0.21 -2.04 16 20 C 0.12 2.58 6.29 38.11 0.24 2.82 16 21 N -0.66 -9.54 5.33 -303.59 -1.62 -11.16 16 22 C 0.51 8.27 7.78 87.66 0.68 8.96 16 23 C -0.16 -1.05 10.39 71.24 0.74 -0.31 16 24 O -0.58 -14.86 14.54 -3.06 -0.04 -14.91 16 25 C -0.10 -2.21 8.69 22.44 0.20 -2.02 16 26 C -0.11 -2.47 9.65 22.21 0.21 -2.25 16 27 C -0.05 -1.30 5.91 -19.59 -0.12 -1.41 16 28 C -0.12 -3.03 8.75 71.23 0.62 -2.41 16 29 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.74 6.04 -2.39 -0.01 1.73 16 33 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 35 H 0.05 1.75 7.93 -2.38 -0.02 1.73 16 36 H 0.25 13.46 8.31 -92.71 -0.77 12.69 16 37 H 0.08 3.96 5.39 -2.39 -0.01 3.95 16 38 H 0.04 1.66 7.94 -2.38 -0.02 1.64 16 39 H 0.05 2.16 6.06 -2.39 -0.01 2.15 16 40 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.41 11.33 6.54 -92.71 -0.61 10.72 16 42 H 0.15 2.66 6.44 -2.91 -0.02 2.64 16 43 H 0.43 3.01 8.67 -92.71 -0.80 2.20 16 44 H 0.11 0.08 7.92 -2.39 -0.02 0.06 16 45 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.14 3.23 6.23 -2.91 -0.02 3.21 16 48 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 49 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.08 1.63 8.04 -2.39 -0.02 1.61 16 51 H 0.07 2.27 5.79 -2.38 -0.01 2.25 16 Total: -1.00 -72.50 411.86 2.78 -69.72 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.45 Total: 26.86 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 6.94 Total: 13.22 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -5.65 Total: -117.77 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.10 Total: -38.14 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -72.50 2.78 -69.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317544990.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.481 kcal (2) G-P(sol) polarization free energy of solvation -72.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds