Wall clock time and date at job start Wed Apr 1 2020 05:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47380 * 2 1 4 4 N 1.46504 * 109.47022 * 182.97848 * 3 2 1 5 5 C 1.34781 * 119.99936 * 83.64287 * 4 3 2 6 6 O 1.21281 * 119.99808 * 175.40913 * 5 4 3 7 7 C 1.50698 * 119.99970 * 355.40910 * 5 4 3 8 8 C 1.50699 * 115.55204 * 64.76048 * 7 5 4 9 9 C 1.35456 * 126.77663 * 39.70645 * 8 7 5 10 10 C 1.41375 * 103.98794 * 179.97438 * 9 8 7 11 11 C 1.50703 * 126.80162 * 179.73746 * 10 9 8 12 12 N 1.30178 * 106.39677 * 0.02562 * 10 9 8 13 13 O 1.20917 * 111.60441 * 0.02562 * 12 10 9 14 14 C 1.52995 * 117.51902 * 210.46381 * 7 5 4 15 15 C 1.52995 * 60.00380 * 107.48413 * 14 7 5 16 16 C 1.46493 * 119.99980 * 263.64227 * 4 3 2 17 17 H 1.08992 * 110.64225 * 188.69657 * 16 4 3 18 18 C 1.55160 * 110.72039 * 312.02935 * 16 4 3 19 19 C 1.54912 * 101.58112 * 153.86504 * 18 16 4 20 20 N 1.47424 * 104.83252 * 322.99310 * 19 18 16 21 21 C 1.36939 * 125.64823 * 204.09549 * 20 19 18 22 22 H 1.08000 * 120.00366 * 180.02562 * 21 20 19 23 23 C 1.38814 * 119.99929 * 0.03821 * 21 20 19 24 24 N 1.31619 * 119.99886 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00078 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46912 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47079 * 119.99779 * 25 23 21 28 28 H 1.48498 * 109.46829 * 239.99937 * 25 23 21 29 29 C 1.47024 * 108.70590 * 24.12525 * 20 19 18 30 30 H 1.08997 * 109.47588 * 184.96590 * 1 2 3 31 31 H 1.09005 * 109.47030 * 304.96857 * 1 2 3 32 32 H 1.08997 * 109.47376 * 64.96576 * 1 2 3 33 33 H 1.09001 * 109.46799 * 239.99527 * 2 1 3 34 34 H 1.09005 * 109.46747 * 119.99976 * 2 1 3 35 35 H 1.08998 * 109.46949 * 62.98028 * 3 2 1 36 36 H 1.09005 * 109.46753 * 302.97973 * 3 2 1 37 37 H 1.07996 * 128.00195 * 359.95310 * 9 8 7 38 38 H 1.09005 * 109.46978 * 84.99664 * 11 10 9 39 39 H 1.08999 * 109.46902 * 204.98979 * 11 10 9 40 40 H 1.08998 * 109.47044 * 324.99721 * 11 10 9 41 41 H 1.08996 * 117.49998 * 214.97487 * 14 7 5 42 42 H 1.09000 * 117.50205 * 359.97438 * 14 7 5 43 43 H 1.09005 * 117.49673 * 252.51465 * 15 14 7 44 44 H 1.08992 * 117.52213 * 107.48336 * 15 14 7 45 45 H 1.08996 * 111.00811 * 271.93864 * 18 16 4 46 46 H 1.09006 * 111.00470 * 35.79530 * 18 16 4 47 47 H 1.09003 * 110.36903 * 204.15195 * 19 18 16 48 48 H 1.08996 * 110.36683 * 81.83332 * 19 18 16 49 49 H 0.97000 * 119.99846 * 179.97438 * 24 23 21 50 50 H 1.08993 * 109.88489 * 239.52592 * 29 20 19 51 51 H 1.09002 * 109.87688 * 118.35650 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5033 1.4430 -0.0718 5 6 4.1195 1.3341 -1.2655 6 8 5.3274 1.4181 -1.3343 7 6 3.3075 1.1080 -2.5147 8 6 2.3773 2.2302 -2.8973 9 6 2.6324 3.5581 -2.8170 10 6 1.4467 4.1633 -3.2930 11 6 1.1738 5.6402 -3.4168 12 7 0.6350 3.1921 -3.5972 13 8 1.1338 2.1115 -3.3836 14 6 3.9602 0.3140 -3.6480 15 6 2.8489 -0.3215 -2.8103 16 6 4.2967 1.5619 1.1539 17 1 5.3516 1.6998 0.9170 18 6 3.7720 2.7248 2.0369 19 6 4.2148 2.2673 3.4491 20 7 4.0368 0.8039 3.4449 21 6 3.8477 0.0196 4.5514 22 1 3.7272 -1.0481 4.4425 23 6 3.8105 0.5971 5.8132 24 7 3.9576 1.8983 5.9460 25 14 3.5532 -0.4727 7.3228 26 1 3.4163 -1.8916 6.9064 27 1 4.7185 -0.3336 8.2326 28 1 2.3196 -0.0434 8.0292 29 6 4.0968 0.3256 2.0559 30 1 -0.3634 -1.0237 0.0890 31 1 -0.3633 0.5890 0.8422 32 1 -0.3634 0.4348 -0.9311 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.7210 1.9406 0.9155 36 1 1.6337 1.9715 -0.8621 37 1 3.5330 4.0423 -2.4695 38 1 1.5666 6.0039 -4.3663 39 1 0.0987 5.8156 -3.3774 40 1 1.6587 6.1693 -2.5964 41 1 3.7169 0.6034 -4.6703 42 1 4.9774 -0.0446 -3.4905 43 1 3.1349 -1.0984 -2.1012 44 1 1.8743 -0.4502 -3.2809 45 1 4.2471 3.6672 1.7647 46 1 2.6866 2.8038 1.9744 47 1 3.5834 2.7240 4.2113 48 1 5.2609 2.5217 3.6197 49 1 3.9313 2.3018 6.8277 50 1 3.1647 -0.1760 1.7959 51 1 4.9354 -0.3603 1.9359 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317762466.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:43 Heat of formation + Delta-G solvation = 91.978552 kcal Electronic energy + Delta-G solvation = -32687.829678 eV Core-core repulsion = 28592.971387 eV Total energy + Delta-G solvation = -4094.858291 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.17654 -40.58774 -37.96911 -36.71490 -35.54566 -34.99444 -32.99278 -31.97459 -31.62497 -29.26269 -28.92052 -27.65656 -26.28295 -25.21618 -24.12124 -23.49694 -23.01557 -21.73321 -21.15014 -20.10255 -19.69702 -18.82880 -18.00391 -17.75389 -16.99898 -16.81794 -16.40332 -15.51028 -14.82716 -14.61250 -14.52232 -14.41756 -14.14839 -13.88459 -13.62817 -13.54833 -13.41156 -13.26879 -13.04785 -12.75028 -12.66255 -12.20148 -11.95962 -11.92965 -11.88837 -11.64121 -11.59780 -11.44667 -11.28301 -11.04650 -10.97420 -10.83602 -10.73317 -10.45378 -10.26995 -10.20777 -10.11379 -9.86056 -9.77968 -9.58491 -9.30240 -8.68247 -8.45414 -6.86615 -5.68932 -3.10837 1.16405 1.99309 2.20985 2.78028 3.05996 3.37656 3.42257 3.43654 3.45820 3.95629 4.00055 4.23407 4.46283 4.47056 4.52674 4.80437 4.94850 4.99413 5.04831 5.20167 5.21402 5.26949 5.30472 5.32686 5.39918 5.41947 5.44539 5.49826 5.53273 5.54565 5.59510 5.65587 5.71090 5.77764 5.81500 5.84988 5.88579 6.07288 6.09761 6.14917 6.33164 6.37549 6.52080 6.63714 6.67568 6.95663 7.43649 7.50221 7.59305 7.80161 8.03548 8.14627 8.31278 9.17901 9.78674 10.42589 11.34968 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.003093 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.239272 B = 9049.691937 C = 9265.103418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.157 4.157 3 C 0.106 3.894 4 N -0.583 5.583 5 C 0.559 3.441 6 O -0.530 6.530 7 C -0.091 4.091 8 C 0.017 3.983 9 C -0.218 4.218 10 C 0.021 3.979 11 C -0.076 4.076 12 N -0.364 5.364 13 O 0.102 5.898 14 C -0.126 4.126 15 C -0.145 4.145 16 C 0.125 3.875 17 H 0.103 0.897 18 C -0.153 4.153 19 C 0.154 3.846 20 N -0.601 5.601 21 C -0.221 4.221 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.914 3.086 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.123 3.877 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.171 0.829 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.110 0.890 48 H 0.015 0.985 49 H 0.252 0.748 50 H 0.038 0.962 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.823 2.013 -20.449 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C -0.017 4.017 4 N -0.313 5.313 5 C 0.344 3.656 6 O -0.407 6.407 7 C -0.095 4.095 8 C -0.046 4.046 9 C -0.240 4.240 10 C -0.138 4.138 11 C -0.134 4.134 12 N -0.069 5.069 13 O 0.036 5.964 14 C -0.164 4.164 15 C -0.182 4.182 16 C 0.023 3.977 17 H 0.121 0.879 18 C -0.192 4.192 19 C 0.029 3.971 20 N -0.328 5.328 21 C -0.349 4.349 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.570 5.570 25 Si 0.745 3.255 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.217 1.217 29 C -0.004 4.004 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.188 0.812 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.125 0.875 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.128 0.872 48 H 0.033 0.967 49 H 0.063 0.937 50 H 0.055 0.945 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.437 2.043 -20.717 21.790 hybrid contribution 0.603 -0.172 1.165 1.323 sum -5.834 1.871 -19.552 20.489 Atomic orbital electron populations 1.21667 0.95196 1.01949 1.01699 1.22347 0.96382 0.97043 1.03752 1.21756 0.79073 0.97675 1.03216 1.47884 1.07018 1.70472 1.05936 1.18881 0.86990 0.76772 0.82936 1.90712 1.13718 1.50276 1.85952 1.19430 1.00355 0.91372 0.98364 1.22771 0.86506 0.95002 1.00352 1.22374 1.01251 0.92347 1.08006 1.23569 0.91203 0.98159 1.00822 1.20185 1.03342 0.86401 1.03444 1.73858 1.21496 0.91096 1.20431 1.84817 1.23916 1.26576 1.61126 1.23203 0.99446 0.98981 0.94726 1.23253 1.00614 0.91760 1.02620 1.22320 0.95934 0.97250 0.82240 0.87884 1.23432 1.00599 0.96398 0.98820 1.21933 0.99116 0.84179 0.91877 1.44424 1.85074 1.03369 0.99899 1.19102 1.41651 0.90292 0.83857 0.90439 1.24781 1.02263 0.96084 0.97451 1.69786 1.57033 1.08544 1.21668 0.86003 0.77397 0.79212 0.82916 1.20528 1.21735 1.21739 1.21739 0.98670 0.93866 0.86100 0.92415 0.92485 0.92951 0.91063 0.90078 0.89031 0.91466 0.81169 0.90118 0.90478 0.89788 0.87460 0.86428 0.86735 0.86714 0.91989 0.91508 0.87243 0.96717 0.93743 0.94463 0.95876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.23 16 2 C -0.16 -1.92 5.91 -26.73 -0.16 -2.08 16 3 C 0.11 1.41 4.67 -4.04 -0.02 1.39 16 4 N -0.58 -8.77 2.50 -164.03 -0.41 -9.18 16 5 C 0.56 8.24 6.66 -10.98 -0.07 8.16 16 6 O -0.53 -9.47 16.07 5.56 0.09 -9.38 16 7 C -0.09 -1.03 1.54 -156.81 -0.24 -1.27 16 8 C 0.02 0.20 4.21 -35.30 -0.15 0.05 16 9 C -0.22 -2.49 10.69 -39.38 -0.42 -2.91 16 10 C 0.02 0.23 7.33 -82.10 -0.60 -0.37 16 11 C -0.08 -0.59 10.47 36.01 0.38 -0.21 16 12 N -0.36 -4.51 12.07 33.42 0.40 -4.11 16 13 O 0.10 1.20 10.96 17.16 0.19 1.39 16 14 C -0.13 -1.16 9.76 -26.74 -0.26 -1.42 16 15 C -0.15 -1.29 7.56 -26.73 -0.20 -1.49 16 16 C 0.13 2.27 3.35 -66.10 -0.22 2.05 16 17 H 0.10 2.00 7.02 -51.93 -0.36 1.64 16 18 C -0.15 -2.86 6.56 -24.58 -0.16 -3.02 16 19 C 0.15 3.66 5.89 -2.53 -0.01 3.65 16 20 N -0.60 -15.04 3.39 -170.07 -0.58 -15.62 16 21 C -0.22 -6.03 10.27 -15.06 -0.15 -6.19 16 22 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 23 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -26.35 10.09 55.49 0.56 -25.79 16 25 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 C 0.12 2.55 6.90 -3.06 -0.02 2.52 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.77 4.16 -51.93 -0.22 0.55 16 34 H 0.08 1.17 5.46 -51.93 -0.28 0.88 16 35 H 0.09 1.34 5.71 -51.93 -0.30 1.05 16 36 H 0.07 0.85 5.11 -51.93 -0.27 0.58 16 37 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.12 1.13 7.98 -51.93 -0.41 0.72 16 43 H 0.11 1.01 7.23 -51.93 -0.38 0.63 16 44 H 0.11 0.85 8.00 -51.93 -0.42 0.44 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.07 1.20 5.77 -51.93 -0.30 0.90 16 47 H 0.11 2.91 5.87 -51.93 -0.31 2.60 16 48 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 50 H 0.04 0.74 4.66 -51.93 -0.24 0.50 16 51 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 395.73 15.07 5.96 5.96 Total: -1.00 -31.26 395.73 -8.53 -39.79 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.67 Total: 2.91 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -2.05 Total: -2.74 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.02 Total: -54.69 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.28 Total: -7.99 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.26 -8.53 -39.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317762466.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.765 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds