Wall clock time and date at job start Wed Apr 1 2020 05:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47380 * 2 1 4 4 N 1.46504 * 109.47022 * 182.97848 * 3 2 1 5 5 C 1.34781 * 119.99936 * 83.64287 * 4 3 2 6 6 O 1.21281 * 119.99808 * 175.40913 * 5 4 3 7 7 C 1.50698 * 119.99970 * 355.40910 * 5 4 3 8 8 C 1.50699 * 115.55204 * 64.76048 * 7 5 4 9 9 C 1.35456 * 126.77663 * 39.70645 * 8 7 5 10 10 C 1.41375 * 103.98794 * 179.97438 * 9 8 7 11 11 C 1.50703 * 126.80162 * 179.73746 * 10 9 8 12 12 N 1.30178 * 106.39677 * 0.02562 * 10 9 8 13 13 O 1.20917 * 111.60441 * 0.02562 * 12 10 9 14 14 C 1.52995 * 117.51902 * 210.46381 * 7 5 4 15 15 C 1.52995 * 60.00380 * 107.48413 * 14 7 5 16 16 C 1.46493 * 119.99980 * 263.64227 * 4 3 2 17 17 H 1.08992 * 110.64225 * 188.69657 * 16 4 3 18 18 C 1.55160 * 110.72039 * 312.02935 * 16 4 3 19 19 C 1.54912 * 101.58112 * 153.86504 * 18 16 4 20 20 N 1.47424 * 104.83252 * 322.99310 * 19 18 16 21 21 C 1.36939 * 125.64823 * 204.09549 * 20 19 18 22 22 H 1.08000 * 120.00366 * 180.02562 * 21 20 19 23 23 C 1.38814 * 119.99929 * 0.03821 * 21 20 19 24 24 N 1.31619 * 119.99886 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00078 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46912 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47079 * 119.99779 * 25 23 21 28 28 H 1.48498 * 109.46829 * 239.99937 * 25 23 21 29 29 C 1.47024 * 108.70590 * 24.12525 * 20 19 18 30 30 H 1.08997 * 109.47588 * 184.96590 * 1 2 3 31 31 H 1.09005 * 109.47030 * 304.96857 * 1 2 3 32 32 H 1.08997 * 109.47376 * 64.96576 * 1 2 3 33 33 H 1.09001 * 109.46799 * 239.99527 * 2 1 3 34 34 H 1.09005 * 109.46747 * 119.99976 * 2 1 3 35 35 H 1.08998 * 109.46949 * 62.98028 * 3 2 1 36 36 H 1.09005 * 109.46753 * 302.97973 * 3 2 1 37 37 H 1.07996 * 128.00195 * 359.95310 * 9 8 7 38 38 H 1.09005 * 109.46978 * 84.99664 * 11 10 9 39 39 H 1.08999 * 109.46902 * 204.98979 * 11 10 9 40 40 H 1.08998 * 109.47044 * 324.99721 * 11 10 9 41 41 H 1.08996 * 117.49998 * 214.97487 * 14 7 5 42 42 H 1.09000 * 117.50205 * 359.97438 * 14 7 5 43 43 H 1.09005 * 117.49673 * 252.51465 * 15 14 7 44 44 H 1.08992 * 117.52213 * 107.48336 * 15 14 7 45 45 H 1.08996 * 111.00811 * 271.93864 * 18 16 4 46 46 H 1.09006 * 111.00470 * 35.79530 * 18 16 4 47 47 H 1.09003 * 110.36903 * 204.15195 * 19 18 16 48 48 H 1.08996 * 110.36683 * 81.83332 * 19 18 16 49 49 H 0.97000 * 119.99846 * 179.97438 * 24 23 21 50 50 H 1.08993 * 109.88489 * 239.52592 * 29 20 19 51 51 H 1.09002 * 109.87688 * 118.35650 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5033 1.4430 -0.0718 5 6 4.1195 1.3341 -1.2655 6 8 5.3274 1.4181 -1.3343 7 6 3.3075 1.1080 -2.5147 8 6 2.3773 2.2302 -2.8973 9 6 2.6324 3.5581 -2.8170 10 6 1.4467 4.1633 -3.2930 11 6 1.1738 5.6402 -3.4168 12 7 0.6350 3.1921 -3.5972 13 8 1.1338 2.1115 -3.3836 14 6 3.9602 0.3140 -3.6480 15 6 2.8489 -0.3215 -2.8103 16 6 4.2967 1.5619 1.1539 17 1 5.3516 1.6998 0.9170 18 6 3.7720 2.7248 2.0369 19 6 4.2148 2.2673 3.4491 20 7 4.0368 0.8039 3.4449 21 6 3.8477 0.0196 4.5514 22 1 3.7272 -1.0481 4.4425 23 6 3.8105 0.5971 5.8132 24 7 3.9576 1.8983 5.9460 25 14 3.5532 -0.4727 7.3228 26 1 3.4163 -1.8916 6.9064 27 1 4.7185 -0.3336 8.2326 28 1 2.3196 -0.0434 8.0292 29 6 4.0968 0.3256 2.0559 30 1 -0.3634 -1.0237 0.0890 31 1 -0.3633 0.5890 0.8422 32 1 -0.3634 0.4348 -0.9311 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.7210 1.9406 0.9155 36 1 1.6337 1.9715 -0.8621 37 1 3.5330 4.0423 -2.4695 38 1 1.5666 6.0039 -4.3663 39 1 0.0987 5.8156 -3.3774 40 1 1.6587 6.1693 -2.5964 41 1 3.7169 0.6034 -4.6703 42 1 4.9774 -0.0446 -3.4905 43 1 3.1349 -1.0984 -2.1012 44 1 1.8743 -0.4502 -3.2809 45 1 4.2471 3.6672 1.7647 46 1 2.6866 2.8038 1.9744 47 1 3.5834 2.7240 4.2113 48 1 5.2609 2.5217 3.6197 49 1 3.9313 2.3018 6.8277 50 1 3.1647 -0.1760 1.7959 51 1 4.9354 -0.3603 1.9359 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317762466.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:41 Heat of formation + Delta-G solvation = 75.442834 kcal Electronic energy + Delta-G solvation = -32688.546721 eV Core-core repulsion = 28592.971387 eV Total energy + Delta-G solvation = -4095.575333 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -46.03288 -41.76598 -39.39653 -37.79656 -36.96171 -35.79210 -34.51065 -33.43477 -32.56890 -31.08482 -29.62581 -29.28351 -27.34834 -26.83415 -25.49254 -24.34972 -23.87424 -22.77185 -22.32840 -21.87154 -20.90431 -19.95173 -19.02106 -18.91587 -18.66017 -17.96040 -17.52154 -16.75098 -16.44765 -16.05355 -15.70321 -15.64283 -15.39408 -15.10572 -14.67724 -14.45276 -14.38150 -14.21526 -14.17793 -13.94859 -13.72610 -13.62791 -13.50244 -13.19715 -13.02692 -12.82125 -12.76121 -12.68372 -12.58957 -12.35899 -12.20021 -12.12834 -12.02965 -11.98645 -11.88799 -11.75490 -11.36304 -11.26054 -11.00432 -10.98232 -10.74534 -10.21697 -9.77555 -8.89836 -7.78273 -5.23137 0.30369 1.15370 1.16622 1.47375 1.48216 1.58081 1.64087 2.05934 2.49557 2.58158 3.14354 3.20855 3.27774 3.32576 3.64873 3.68218 3.75501 3.78636 3.90505 3.91636 4.00271 4.11865 4.17238 4.21634 4.37282 4.40117 4.46911 4.55105 4.56497 4.62280 4.64419 4.68340 4.73815 4.80457 4.83985 4.85599 4.88813 4.94488 4.96736 5.01351 5.09253 5.18058 5.20963 5.33859 5.40205 5.45087 5.54019 5.56971 5.76204 6.27231 6.27945 6.94445 7.09012 7.19554 7.75032 8.38598 9.23766 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.003093 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.239272 B = 9049.691937 C = 9265.103418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.152 4.152 3 C 0.109 3.891 4 N -0.581 5.581 5 C 0.561 3.439 6 O -0.564 6.564 7 C -0.106 4.106 8 C 0.020 3.980 9 C -0.230 4.230 10 C 0.021 3.979 11 C -0.078 4.078 12 N -0.383 5.383 13 O 0.101 5.899 14 C -0.116 4.116 15 C -0.131 4.131 16 C 0.141 3.859 17 H 0.090 0.910 18 C -0.135 4.135 19 C 0.158 3.842 20 N -0.620 5.620 21 C -0.236 4.236 22 H 0.080 0.920 23 C -0.063 4.063 24 N -0.947 5.947 25 Si 0.979 3.021 26 H -0.267 1.267 27 H -0.294 1.294 28 H -0.289 1.289 29 C 0.123 3.877 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.172 0.828 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.136 0.864 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.081 0.919 48 H -0.013 1.013 49 H 0.248 0.752 50 H 0.053 0.947 51 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.230 1.371 -22.414 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.190 4.190 3 C -0.013 4.013 4 N -0.311 5.311 5 C 0.348 3.652 6 O -0.443 6.443 7 C -0.110 4.110 8 C -0.043 4.043 9 C -0.252 4.252 10 C -0.137 4.137 11 C -0.135 4.135 12 N -0.090 5.090 13 O 0.036 5.964 14 C -0.153 4.153 15 C -0.167 4.167 16 C 0.037 3.963 17 H 0.108 0.892 18 C -0.174 4.174 19 C 0.033 3.967 20 N -0.346 5.346 21 C -0.365 4.365 22 H 0.098 0.902 23 C -0.256 4.256 24 N -0.597 5.597 25 Si 0.808 3.192 26 H -0.192 1.192 27 H -0.221 1.221 28 H -0.216 1.216 29 C -0.003 4.003 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.189 0.811 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.145 0.855 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.154 0.846 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.099 0.901 48 H 0.005 0.995 49 H 0.057 0.943 50 H 0.070 0.930 51 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -7.865 1.380 -22.720 24.082 hybrid contribution 1.081 0.031 1.733 2.043 sum -6.784 1.411 -20.986 22.101 Atomic orbital electron populations 1.21637 0.93844 1.02649 1.01945 1.22293 0.97478 0.95912 1.03345 1.21826 0.77806 0.98636 1.03061 1.47836 1.07516 1.70608 1.05123 1.19378 0.86819 0.75435 0.83545 1.90697 1.15464 1.51596 1.86536 1.19230 1.01318 0.92897 0.97572 1.22733 0.86470 0.94933 1.00204 1.22519 1.01608 0.92656 1.08381 1.24031 0.90646 0.99349 0.99675 1.20338 1.03876 0.84530 1.04747 1.73851 1.22075 0.91516 1.21557 1.84797 1.23764 1.26498 1.61293 1.23320 0.99363 0.97579 0.95065 1.23423 1.01585 0.89682 1.02037 1.21871 0.95739 0.95552 0.83137 0.89238 1.23225 1.01343 0.97249 0.95570 1.21692 0.96912 0.83916 0.94218 1.44673 1.84962 1.03884 1.01124 1.19441 1.41277 0.90818 0.84946 0.90171 1.25595 1.02535 0.97333 1.00145 1.70022 1.57924 1.09959 1.21805 0.84996 0.76794 0.78258 0.79186 1.19159 1.22140 1.21621 1.21845 0.98833 0.94918 0.84684 0.91310 0.93437 0.91714 0.89382 0.92410 0.90350 0.90195 0.81097 0.88556 0.90077 0.88702 0.85492 0.87012 0.86561 0.84570 0.90153 0.90413 0.90106 0.99488 0.94264 0.92984 0.96912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.91 71.98 0.71 -2.06 16 2 C -0.15 -3.44 5.91 30.59 0.18 -3.26 16 3 C 0.11 2.75 4.67 86.38 0.40 3.15 16 4 N -0.58 -16.98 2.50 -791.25 -1.98 -18.95 16 5 C 0.56 15.92 6.66 87.66 0.58 16.51 16 6 O -0.56 -19.96 16.07 -3.03 -0.05 -20.01 16 7 C -0.11 -2.17 1.54 -53.68 -0.08 -2.26 16 8 C 0.02 0.42 4.21 25.04 0.11 0.53 16 9 C -0.23 -4.85 10.69 22.40 0.24 -4.61 16 10 C 0.02 0.43 7.33 43.58 0.32 0.75 16 11 C -0.08 -1.02 10.47 71.24 0.75 -0.28 16 12 N -0.38 -8.70 12.07 -49.56 -0.60 -9.29 16 13 O 0.10 2.14 10.96 71.59 0.78 2.92 16 14 C -0.12 -1.84 9.76 30.59 0.30 -1.54 16 15 C -0.13 -1.91 7.56 30.59 0.23 -1.68 16 16 C 0.14 5.12 3.35 46.18 0.15 5.28 16 17 H 0.09 3.54 7.02 -2.39 -0.02 3.52 16 18 C -0.13 -5.05 6.56 31.99 0.21 -4.84 16 19 C 0.16 7.77 5.89 86.86 0.51 8.28 16 20 N -0.62 -31.78 3.39 -691.98 -2.35 -34.13 16 21 C -0.24 -13.11 10.27 84.03 0.86 -12.24 16 22 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 23 C -0.06 -3.56 5.49 84.86 0.47 -3.09 16 24 N -0.95 -55.72 10.09 21.65 0.22 -55.51 16 25 Si 0.98 45.22 29.55 68.60 2.03 47.25 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 28 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 29 C 0.12 5.16 6.90 86.73 0.60 5.76 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.67 4.16 -2.39 -0.01 1.66 16 34 H 0.06 1.60 5.46 -2.38 -0.01 1.59 16 35 H 0.08 2.22 5.71 -2.39 -0.01 2.20 16 36 H 0.08 1.86 5.11 -2.38 -0.01 1.84 16 37 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.11 1.95 7.98 -2.39 -0.02 1.93 16 43 H 0.12 1.71 7.23 -2.38 -0.02 1.69 16 44 H 0.14 1.47 8.00 -2.39 -0.02 1.45 16 45 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 46 H 0.08 2.76 5.77 -2.38 -0.01 2.74 16 47 H 0.08 4.47 5.87 -2.39 -0.01 4.46 16 48 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 49 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 50 H 0.05 2.06 4.66 -2.39 -0.01 2.04 16 51 H 0.01 0.56 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -68.81 395.73 5.55 -63.26 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.95 Total: 20.05 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 6.54 Total: 4.41 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -4.71 Total: -117.88 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.74 Total: -17.08 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -68.81 5.55 -63.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317762466.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.703 kcal (2) G-P(sol) polarization free energy of solvation -68.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds