Wall clock time and date at job start Wed Apr 1 2020 05:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46496 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.34779 * 120.00216 * 90.00221 * 4 3 2 6 6 O 1.21274 * 119.99999 * 179.97438 * 5 4 3 7 7 C 1.50703 * 119.99541 * 359.97438 * 5 4 3 8 8 O 1.42897 * 109.46736 * 179.97438 * 7 5 4 9 9 C 1.42908 * 114.00054 * 180.02562 * 8 7 5 10 10 C 1.50695 * 109.47289 * 180.02562 * 9 8 7 11 11 C 1.38655 * 120.79193 * 269.72057 * 10 9 8 12 12 C 1.38200 * 119.16182 * 179.79993 * 11 10 9 13 13 N 1.31866 * 120.76365 * 0.48320 * 12 11 10 14 14 C 1.31863 * 121.72911 * 359.74188 * 13 12 11 15 15 C 1.38207 * 120.76296 * 0.02562 * 14 13 12 16 16 C 1.46502 * 120.00058 * 270.00039 * 4 3 2 17 17 H 1.08998 * 110.64014 * 1.69237 * 16 4 3 18 18 C 1.55154 * 110.71989 * 125.02539 * 16 4 3 19 19 C 1.54912 * 101.58014 * 153.86625 * 18 16 4 20 20 N 1.47423 * 104.83502 * 322.99097 * 19 18 16 21 21 C 1.36930 * 125.65201 * 204.09881 * 20 19 18 22 22 H 1.07996 * 120.00628 * 180.02562 * 21 20 19 23 23 C 1.38813 * 119.99956 * 0.03509 * 21 20 19 24 24 N 1.31622 * 119.99834 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00375 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46727 * 59.99784 * 25 23 21 27 27 H 1.48498 * 109.47421 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46960 * 300.00127 * 25 23 21 29 29 C 1.47026 * 108.70168 * 24.12752 * 20 19 18 30 30 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 32 32 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 34 34 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 35 35 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 36 36 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 37 37 H 1.09000 * 109.47193 * 300.00050 * 7 5 4 38 38 H 1.09004 * 109.47388 * 60.00115 * 7 5 4 39 39 H 1.09002 * 109.46561 * 299.99801 * 9 8 7 40 40 H 1.08997 * 109.46835 * 59.99720 * 9 8 7 41 41 H 1.08003 * 120.41446 * 0.02562 * 11 10 9 42 42 H 1.08002 * 119.61428 * 180.25065 * 12 11 10 43 43 H 1.08001 * 119.61714 * 179.97438 * 14 13 12 44 44 H 1.08003 * 120.41596 * 179.97438 * 15 14 13 45 45 H 1.09002 * 111.00448 * 271.93908 * 18 16 4 46 46 H 1.08996 * 111.00683 * 35.79194 * 18 16 4 47 47 H 1.09004 * 110.36430 * 204.15522 * 19 18 16 48 48 H 1.08995 * 110.36763 * 81.83021 * 19 18 16 49 49 H 0.97006 * 120.00130 * 179.97438 * 24 23 21 50 50 H 1.09001 * 109.88212 * 239.53037 * 29 20 19 51 51 H 1.08998 * 109.88273 * 118.35907 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1784 1.4427 -1.1681 6 8 5.3911 1.4432 -1.1686 7 6 3.4243 1.4424 -2.4729 8 8 4.3524 1.4433 -3.5594 9 6 3.7373 1.4437 -4.8493 10 6 4.8035 1.4440 -5.9143 11 6 5.3016 2.6352 -6.4196 12 6 6.2821 2.5962 -7.3928 13 7 6.7364 1.4445 -7.8468 14 6 6.2829 0.2926 -7.3927 15 6 5.3057 0.2531 -6.4161 16 6 4.2380 1.4423 1.2678 17 1 3.5475 1.4121 2.1106 18 6 5.2338 0.2539 1.3261 19 6 6.3054 0.7939 2.3058 20 7 6.4179 2.2292 1.9884 21 6 7.5098 3.0179 2.2350 22 1 7.4932 4.0632 1.9640 23 6 8.6382 2.4738 2.8330 24 7 8.6587 1.1997 3.1626 25 14 10.1275 3.5499 3.1701 26 1 9.7407 4.6603 4.0771 27 1 11.1920 2.7356 3.8095 28 1 10.6338 4.1091 1.8909 29 6 5.1633 2.6737 1.3639 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 2.7979 0.5522 -2.5303 38 1 2.7972 2.3322 -2.5304 39 1 3.1176 0.5534 -4.9565 40 1 3.1168 2.3334 -4.9556 41 1 4.9306 3.5816 -6.0547 42 1 6.6782 3.5197 -7.7887 43 1 6.6789 -0.6306 -7.7892 44 1 4.9380 -0.6935 -6.0486 45 1 4.7534 -0.6391 1.7261 46 1 5.6653 0.0572 0.3448 47 1 7.2589 0.2927 2.1390 48 1 5.9797 0.6579 3.3370 49 1 9.4474 0.8194 3.5803 50 1 5.3640 3.0652 0.3666 51 1 4.6950 3.4422 1.9789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317766309.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:31 Heat of formation + Delta-G solvation = -3.377887 kcal Electronic energy + Delta-G solvation = -30920.986174 eV Core-core repulsion = 26821.992918 eV Total energy + Delta-G solvation = -4098.993256 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.43898 -40.11568 -38.00871 -36.51783 -35.97647 -33.45533 -33.02305 -31.80762 -31.43394 -29.42234 -28.57266 -27.27753 -26.50917 -25.66771 -24.18159 -23.70060 -22.26961 -22.03760 -20.97443 -20.04689 -18.68089 -17.42189 -17.06292 -16.92925 -16.76237 -16.59526 -15.93969 -15.83753 -15.49081 -14.83095 -14.58859 -14.48274 -14.38665 -13.97127 -13.91783 -13.83105 -13.52636 -13.21766 -12.97837 -12.58597 -12.50759 -12.36304 -12.05270 -11.96310 -11.80300 -11.59867 -11.51376 -11.37006 -10.96329 -10.91952 -10.76063 -10.68399 -10.41448 -10.03798 -10.00433 -9.97129 -9.72431 -9.71440 -9.45192 -9.36246 -9.02280 -8.51929 -8.30553 -6.67097 -5.51150 -2.91406 0.89148 0.92450 2.78576 2.85442 3.48871 3.49831 3.53702 3.55532 3.86113 4.25061 4.35493 4.41446 4.59721 4.62556 4.64904 4.74912 4.78571 4.87443 4.91202 4.96234 5.03179 5.05275 5.12007 5.19698 5.37984 5.38246 5.45627 5.47141 5.54903 5.61683 5.66197 5.70784 5.76665 5.81308 5.85234 5.95039 6.04889 6.05245 6.31782 6.45447 6.59263 6.61402 6.70058 6.78631 6.84177 7.24066 7.56967 7.68764 7.74278 7.76084 7.99673 8.48279 8.52428 9.35962 9.97248 10.62288 11.52862 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007437 B = 0.003166 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3764.194561 B = 8842.912477 C =11856.859946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.107 3.893 4 N -0.606 5.606 5 C 0.505 3.495 6 O -0.481 6.481 7 C 0.045 3.955 8 O -0.352 6.352 9 C 0.100 3.900 10 C -0.044 4.044 11 C -0.150 4.150 12 C 0.096 3.904 13 N -0.483 5.483 14 C 0.096 3.904 15 C -0.150 4.150 16 C 0.137 3.863 17 H 0.089 0.911 18 C -0.156 4.156 19 C 0.158 3.842 20 N -0.595 5.595 21 C -0.214 4.214 22 H 0.074 0.926 23 C -0.013 4.013 24 N -0.924 5.924 25 Si 0.914 3.086 26 H -0.287 1.287 27 H -0.290 1.290 28 H -0.286 1.286 29 C 0.133 3.867 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.137 0.863 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.136 0.864 45 H 0.051 0.949 46 H 0.082 0.918 47 H 0.107 0.893 48 H 0.009 0.991 49 H 0.251 0.749 50 H 0.035 0.965 51 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.191 -2.598 -16.679 26.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.017 4.017 4 N -0.341 5.341 5 C 0.290 3.710 6 O -0.353 6.353 7 C -0.035 4.035 8 O -0.270 6.270 9 C 0.023 3.977 10 C -0.052 4.052 11 C -0.170 4.170 12 C -0.061 4.061 13 N -0.192 5.192 14 C -0.061 4.061 15 C -0.170 4.170 16 C 0.035 3.965 17 H 0.107 0.893 18 C -0.196 4.196 19 C 0.033 3.967 20 N -0.321 5.321 21 C -0.343 4.343 22 H 0.092 0.908 23 C -0.208 4.208 24 N -0.573 5.573 25 Si 0.745 3.255 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.006 3.994 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.154 0.846 42 H 0.175 0.825 43 H 0.175 0.825 44 H 0.154 0.846 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.124 0.876 48 H 0.027 0.973 49 H 0.061 0.939 50 H 0.053 0.947 51 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -18.439 -2.594 -17.207 25.354 hybrid contribution -0.430 0.549 0.937 1.168 sum -18.869 -2.045 -16.270 24.999 Atomic orbital electron populations 1.21710 0.95190 1.01950 1.01881 1.22016 0.95917 0.97364 1.03117 1.21684 0.80028 0.96782 1.03163 1.47936 1.05899 1.74403 1.05880 1.20023 0.88380 0.78251 0.84345 1.90863 1.13034 1.44988 1.86400 1.22372 0.92143 1.02022 0.86941 1.88142 1.31424 1.95367 1.12077 1.21343 0.92843 1.01432 0.82071 1.19951 0.96629 0.93589 0.95064 1.22101 0.98131 0.98779 0.97964 1.22781 0.93274 0.96380 0.93628 1.67661 1.26067 0.98648 1.26819 1.22778 0.93325 0.96373 0.93627 1.22090 0.98150 0.98757 0.98011 1.22208 0.93221 0.98227 0.82866 0.89311 1.23444 0.97744 0.95323 1.03048 1.21838 0.97876 0.84686 0.92295 1.44274 1.11055 1.06569 1.70242 1.19007 0.90975 0.91918 1.32404 0.90771 1.24754 0.98208 0.96370 1.01468 1.69789 1.28761 1.10958 1.47821 0.86157 0.82459 0.79076 0.77857 1.21349 1.21616 1.21230 1.21485 0.87761 0.93384 0.96794 0.92425 0.92745 0.92495 0.91907 0.91043 0.90878 0.89995 0.90541 0.90604 0.91831 0.91806 0.84552 0.82510 0.82528 0.84582 0.92994 0.89943 0.87573 0.97307 0.93853 0.94684 0.96647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.15 -1.19 6.26 -26.73 -0.17 -1.35 16 3 C 0.11 0.99 5.19 -4.04 -0.02 0.97 16 4 N -0.61 -8.76 2.54 -164.02 -0.42 -9.18 16 5 C 0.50 8.31 6.85 -10.98 -0.08 8.24 16 6 O -0.48 -10.87 12.85 -14.35 -0.18 -11.05 16 7 C 0.05 0.52 4.97 36.01 0.18 0.70 16 8 O -0.35 -4.86 9.86 -55.14 -0.54 -5.40 16 9 C 0.10 0.92 6.11 36.00 0.22 1.14 16 10 C -0.04 -0.46 5.55 -104.32 -0.58 -1.04 16 11 C -0.15 -1.51 9.82 -39.44 -0.39 -1.90 16 12 C 0.10 1.00 11.18 -17.55 -0.20 0.80 16 13 N -0.48 -5.74 10.36 -13.25 -0.14 -5.88 16 14 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 15 C -0.15 -1.50 9.82 -39.44 -0.39 -1.88 16 16 C 0.14 2.49 3.44 -66.09 -0.23 2.27 16 17 H 0.09 1.42 7.88 -51.93 -0.41 1.01 16 18 C -0.16 -3.27 6.40 -24.58 -0.16 -3.42 16 19 C 0.16 4.12 5.89 -2.53 -0.01 4.11 16 20 N -0.60 -16.48 3.39 -170.07 -0.58 -17.06 16 21 C -0.21 -6.43 10.27 -15.06 -0.15 -6.58 16 22 H 0.07 2.16 7.83 -52.49 -0.41 1.75 16 23 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 24 N -0.92 -28.42 10.09 55.49 0.56 -27.86 16 25 Si 0.91 23.37 29.55 -169.99 -5.02 18.35 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 C 0.13 3.03 6.49 -3.06 -0.02 3.01 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.52 7.22 -51.93 -0.37 0.15 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.51 6.44 -51.93 -0.33 0.18 16 36 H 0.08 0.70 7.96 -51.93 -0.41 0.28 16 37 H 0.08 0.66 7.18 -51.93 -0.37 0.29 16 38 H 0.08 0.66 7.40 -51.93 -0.38 0.27 16 39 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 40 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 41 H 0.14 1.11 8.06 -52.48 -0.42 0.68 16 42 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.08 1.92 5.81 -51.93 -0.30 1.62 16 47 H 0.11 3.15 5.87 -51.93 -0.30 2.84 16 48 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 50 H 0.04 0.87 6.28 -51.93 -0.33 0.54 16 51 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 408.41 15.07 6.15 6.15 Total: -1.00 -38.22 408.41 -10.34 -48.56 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -8.26 Total: -1.46 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -1.91 Total: 4.83 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.57 Total: -59.97 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.73 Total: -16.45 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.22 -10.34 -48.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317766309.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.183 kcal (2) G-P(sol) polarization free energy of solvation -38.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds