Wall clock time and date at job start Wed Apr 1 2020 05:21:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53006 * 109.47127 * 2 1
4 4 N 1.46496 * 109.46995 * 180.02562 * 3 2 1
5 5 C 1.34779 * 120.00216 * 90.00221 * 4 3 2
6 6 O 1.21274 * 119.99999 * 179.97438 * 5 4 3
7 7 C 1.50703 * 119.99541 * 359.97438 * 5 4 3
8 8 O 1.42897 * 109.46736 * 179.97438 * 7 5 4
9 9 C 1.42908 * 114.00054 * 180.02562 * 8 7 5
10 10 C 1.50695 * 109.47289 * 180.02562 * 9 8 7
11 11 C 1.38655 * 120.79193 * 269.72057 * 10 9 8
12 12 C 1.38200 * 119.16182 * 179.79993 * 11 10 9
13 13 N 1.31866 * 120.76365 * 0.48320 * 12 11 10
14 14 C 1.31863 * 121.72911 * 359.74188 * 13 12 11
15 15 C 1.38207 * 120.76296 * 0.02562 * 14 13 12
16 16 C 1.46502 * 120.00058 * 270.00039 * 4 3 2
17 17 H 1.08998 * 110.64014 * 1.69237 * 16 4 3
18 18 C 1.55154 * 110.71989 * 125.02539 * 16 4 3
19 19 C 1.54912 * 101.58014 * 153.86625 * 18 16 4
20 20 N 1.47423 * 104.83502 * 322.99097 * 19 18 16
21 21 C 1.36930 * 125.65201 * 204.09881 * 20 19 18
22 22 H 1.07996 * 120.00628 * 180.02562 * 21 20 19
23 23 C 1.38813 * 119.99956 * 0.03509 * 21 20 19
24 24 N 1.31622 * 119.99834 * 0.02562 * 23 21 20
25 25 Si 1.86802 * 120.00375 * 180.02562 * 23 21 20
26 26 H 1.48502 * 109.46727 * 59.99784 * 25 23 21
27 27 H 1.48498 * 109.47421 * 180.02562 * 25 23 21
28 28 H 1.48498 * 109.46960 * 300.00127 * 25 23 21
29 29 C 1.47026 * 108.70168 * 24.12752 * 20 19 18
30 30 H 1.09001 * 109.47289 * 299.99953 * 1 2 3
31 31 H 1.09004 * 109.47261 * 59.99697 * 1 2 3
32 32 H 1.09002 * 109.47153 * 179.97438 * 1 2 3
33 33 H 1.09001 * 109.46832 * 240.00321 * 2 1 3
34 34 H 1.08993 * 109.47194 * 119.99842 * 2 1 3
35 35 H 1.09001 * 109.46801 * 300.00272 * 3 2 1
36 36 H 1.09001 * 109.46998 * 59.99868 * 3 2 1
37 37 H 1.09000 * 109.47193 * 300.00050 * 7 5 4
38 38 H 1.09004 * 109.47388 * 60.00115 * 7 5 4
39 39 H 1.09002 * 109.46561 * 299.99801 * 9 8 7
40 40 H 1.08997 * 109.46835 * 59.99720 * 9 8 7
41 41 H 1.08003 * 120.41446 * 0.02562 * 11 10 9
42 42 H 1.08002 * 119.61428 * 180.25065 * 12 11 10
43 43 H 1.08001 * 119.61714 * 179.97438 * 14 13 12
44 44 H 1.08003 * 120.41596 * 179.97438 * 15 14 13
45 45 H 1.09002 * 111.00448 * 271.93908 * 18 16 4
46 46 H 1.08996 * 111.00683 * 35.79194 * 18 16 4
47 47 H 1.09004 * 110.36430 * 204.15522 * 19 18 16
48 48 H 1.08995 * 110.36763 * 81.83021 * 19 18 16
49 49 H 0.97006 * 120.00130 * 179.97438 * 24 23 21
50 50 H 1.09001 * 109.88212 * 239.53037 * 29 20 19
51 51 H 1.08998 * 109.88273 * 118.35907 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 7 3.5050 1.4425 -0.0006
5 6 4.1784 1.4427 -1.1681
6 8 5.3911 1.4432 -1.1686
7 6 3.4243 1.4424 -2.4729
8 8 4.3524 1.4433 -3.5594
9 6 3.7373 1.4437 -4.8493
10 6 4.8035 1.4440 -5.9143
11 6 5.3016 2.6352 -6.4196
12 6 6.2821 2.5962 -7.3928
13 7 6.7364 1.4445 -7.8468
14 6 6.2829 0.2926 -7.3927
15 6 5.3057 0.2531 -6.4161
16 6 4.2380 1.4423 1.2678
17 1 3.5475 1.4121 2.1106
18 6 5.2338 0.2539 1.3261
19 6 6.3054 0.7939 2.3058
20 7 6.4179 2.2292 1.9884
21 6 7.5098 3.0179 2.2350
22 1 7.4932 4.0632 1.9640
23 6 8.6382 2.4738 2.8330
24 7 8.6587 1.1997 3.1626
25 14 10.1275 3.5499 3.1701
26 1 9.7407 4.6603 4.0771
27 1 11.1920 2.7356 3.8095
28 1 10.6338 4.1091 1.8909
29 6 5.1633 2.6737 1.3639
30 1 -0.3634 0.5138 0.8900
31 1 -0.3634 0.5139 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5138 0.8899
35 1 1.6766 1.9564 -0.8900
36 1 1.6766 1.9564 0.8900
37 1 2.7979 0.5522 -2.5303
38 1 2.7972 2.3322 -2.5304
39 1 3.1176 0.5534 -4.9565
40 1 3.1168 2.3334 -4.9556
41 1 4.9306 3.5816 -6.0547
42 1 6.6782 3.5197 -7.7887
43 1 6.6789 -0.6306 -7.7892
44 1 4.9380 -0.6935 -6.0486
45 1 4.7534 -0.6391 1.7261
46 1 5.6653 0.0572 0.3448
47 1 7.2589 0.2927 2.1390
48 1 5.9797 0.6579 3.3370
49 1 9.4474 0.8194 3.5803
50 1 5.3640 3.0652 0.3666
51 1 4.6950 3.4422 1.9789
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001317766309.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:21:30
Heat of formation + Delta-G solvation = -28.402757 kcal
Electronic energy + Delta-G solvation = -30922.071334 eV
Core-core repulsion = 26821.992918 eV
Total energy + Delta-G solvation = -4100.078416 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-41.46528 -41.08886 -39.07821 -38.08652 -37.09630 -34.63277 -34.17497 -33.25231
-32.16444 -31.20842 -29.94428 -28.62924 -27.31732 -26.90613 -25.96282 -24.44159
-23.00379 -22.90718 -22.33895 -21.98227 -19.91468 -18.98287 -18.29864 -18.00785
-17.69555 -17.51775 -16.87890 -16.82575 -16.55597 -16.48095 -15.96124 -15.59736
-15.47667 -15.38390 -14.85844 -14.75831 -14.57380 -14.38077 -14.10636 -13.92546
-13.73655 -13.46558 -13.29768 -13.01752 -12.93550 -12.87204 -12.69781 -12.62894
-12.48187 -12.37706 -12.18392 -12.07605 -11.98092 -11.83558 -11.59928 -11.34937
-10.81098 -10.75994 -10.71715 -10.48690 -10.39593 -10.10701 -9.59090 -8.87095
-7.77606 -5.21356 0.12512 0.18040 1.41299 1.46917 1.52661 1.66663
1.75175 2.48482 2.66675 3.08401 3.30830 3.48904 3.57848 3.74053
3.77666 3.81976 3.89608 3.95417 4.08379 4.11445 4.13793 4.18833
4.21802 4.26265 4.31131 4.41760 4.44071 4.48431 4.63254 4.68648
4.68975 4.74809 4.78904 4.86397 4.97179 4.97339 4.98481 5.02281
5.08733 5.29726 5.32484 5.34035 5.40881 5.53848 5.63093 5.73856
5.76319 5.79790 6.02062 6.30094 6.51403 6.98170 7.09791 7.31722
7.78036 8.41953 9.24026
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.007437 B = 0.003166 C = 0.002361
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3764.194561 B = 8842.912477 C =11856.859946
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.141 4.141
3 C 0.100 3.900
4 N -0.599 5.599
5 C 0.495 3.505
6 O -0.557 6.557
7 C 0.054 3.946
8 O -0.396 6.396
9 C 0.099 3.901
10 C -0.062 4.062
11 C -0.159 4.159
12 C 0.081 3.919
13 N -0.511 5.511
14 C 0.081 3.919
15 C -0.157 4.157
16 C 0.156 3.844
17 H 0.121 0.879
18 C -0.140 4.140
19 C 0.161 3.839
20 N -0.619 5.619
21 C -0.239 4.239
22 H 0.073 0.927
23 C -0.069 4.069
24 N -0.949 5.949
25 Si 0.982 3.018
26 H -0.272 1.272
27 H -0.289 1.289
28 H -0.284 1.284
29 C 0.130 3.870
30 H 0.060 0.940
31 H 0.071 0.929
32 H 0.057 0.943
33 H 0.063 0.937
34 H 0.054 0.946
35 H 0.106 0.894
36 H 0.095 0.905
37 H 0.113 0.887
38 H 0.113 0.887
39 H 0.090 0.910
40 H 0.089 0.911
41 H 0.153 0.847
42 H 0.176 0.824
43 H 0.177 0.823
44 H 0.155 0.845
45 H 0.082 0.918
46 H 0.056 0.944
47 H 0.063 0.937
48 H -0.003 1.003
49 H 0.247 0.753
50 H 0.013 0.987
51 H 0.025 0.975
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.592 -2.165 -17.330 29.353
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.180 4.180
3 C -0.021 4.021
4 N -0.332 5.332
5 C 0.283 3.717
6 O -0.434 6.434
7 C -0.025 4.025
8 O -0.315 6.315
9 C 0.023 3.977
10 C -0.070 4.070
11 C -0.178 4.178
12 C -0.075 4.075
13 N -0.221 5.221
14 C -0.075 4.075
15 C -0.177 4.177
16 C 0.052 3.948
17 H 0.138 0.862
18 C -0.180 4.180
19 C 0.036 3.964
20 N -0.345 5.345
21 C -0.369 4.369
22 H 0.091 0.909
23 C -0.261 4.261
24 N -0.599 5.599
25 Si 0.810 3.190
26 H -0.198 1.198
27 H -0.214 1.214
28 H -0.210 1.210
29 C 0.004 3.996
30 H 0.079 0.921
31 H 0.090 0.910
32 H 0.076 0.924
33 H 0.081 0.919
34 H 0.073 0.927
35 H 0.124 0.876
36 H 0.113 0.887
37 H 0.130 0.870
38 H 0.130 0.870
39 H 0.108 0.892
40 H 0.107 0.893
41 H 0.171 0.829
42 H 0.193 0.807
43 H 0.194 0.806
44 H 0.172 0.828
45 H 0.101 0.899
46 H 0.075 0.925
47 H 0.081 0.919
48 H 0.015 0.985
49 H 0.056 0.944
50 H 0.031 0.969
51 H 0.043 0.957
Dipole moment (debyes) X Y Z Total
from point charges -21.938 -2.155 -17.873 28.379
hybrid contribution 0.596 0.415 1.104 1.321
sum -21.343 -1.741 -16.769 27.198
Atomic orbital electron populations
1.21672 0.93243 1.02401 1.02905 1.21959 0.97436 0.96190 1.02402
1.22106 0.76255 0.98206 1.05539 1.47975 1.08006 1.73197 1.04028
1.21088 0.87900 0.76337 0.86382 1.90839 1.16484 1.48503 1.87595
1.22431 0.91164 1.05304 0.83582 1.88087 1.33679 1.95832 1.13929
1.21561 0.92488 1.03919 0.79695 1.20333 0.97280 0.93817 0.95592
1.22374 0.97998 0.99652 0.97794 1.23179 0.93575 0.96819 0.93950
1.67672 1.27060 0.99517 1.27893 1.23197 0.93588 0.96800 0.93912
1.22374 0.97935 0.99639 0.97759 1.21896 0.92891 0.94029 0.86021
0.86154 1.23173 0.97098 0.97518 1.00176 1.21586 0.97584 0.84265
0.92982 1.44579 1.12278 1.07170 1.70476 1.19377 0.92435 0.92416
1.32629 0.90873 1.25663 1.01056 0.97845 1.01577 1.70070 1.29147
1.12451 1.48240 0.85100 0.78576 0.77605 0.77739 1.19780 1.21437
1.20998 1.21628 0.87067 0.95811 0.95085 0.92128 0.91027 0.92399
0.91868 0.92704 0.87552 0.88676 0.86966 0.86962 0.89211 0.89312
0.82896 0.80689 0.80588 0.82755 0.89907 0.92516 0.91898 0.98496
0.94358 0.96910 0.95673
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.10 9.91 71.98 0.71 -0.39 16
2 C -0.14 -1.74 6.26 30.60 0.19 -1.55 16
3 C 0.10 1.41 5.19 86.38 0.45 1.86 16
4 N -0.60 -15.93 2.54 -791.24 -2.01 -17.94 16
5 C 0.49 15.68 6.85 87.66 0.60 16.28 16
6 O -0.56 -25.94 12.85 16.03 0.21 -25.74 16
7 C 0.05 1.05 4.97 71.24 0.35 1.41 16
8 O -0.40 -10.17 9.86 -129.94 -1.28 -11.45 16
9 C 0.10 1.54 6.11 71.23 0.44 1.98 16
10 C -0.06 -1.22 5.55 -19.67 -0.11 -1.33 16
11 C -0.16 -3.08 9.82 22.36 0.22 -2.86 16
12 C 0.08 1.68 11.18 84.68 0.95 2.63 16
13 N -0.51 -12.24 10.36 -195.85 -2.03 -14.27 16
14 C 0.08 1.66 11.18 84.68 0.95 2.61 16
15 C -0.16 -3.00 9.82 22.36 0.22 -2.78 16
16 C 0.16 5.48 3.44 46.18 0.16 5.64 16
17 H 0.12 3.50 7.88 -2.39 -0.02 3.48 16
18 C -0.14 -5.94 6.40 31.99 0.20 -5.73 16
19 C 0.16 8.75 5.89 86.86 0.51 9.26 16
20 N -0.62 -35.50 3.39 -691.98 -2.35 -37.85 16
21 C -0.24 -14.84 10.27 84.03 0.86 -13.98 16
22 H 0.07 4.39 7.83 -2.91 -0.02 4.37 16
23 C -0.07 -4.26 5.49 84.86 0.47 -3.79 16
24 N -0.95 -60.72 10.09 21.65 0.22 -60.51 16
25 Si 0.98 49.22 29.55 68.60 2.03 51.25 16
26 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16
27 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16
28 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16
29 C 0.13 6.03 6.49 86.73 0.56 6.59 16
30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16
31 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16
32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16
33 H 0.06 0.79 7.22 -2.39 -0.02 0.77 16
34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16
35 H 0.11 0.86 6.44 -2.39 -0.02 0.84 16
36 H 0.09 1.16 7.96 -2.39 -0.02 1.15 16
37 H 0.11 1.38 7.18 -2.39 -0.02 1.36 16
38 H 0.11 1.36 7.40 -2.39 -0.02 1.34 16
39 H 0.09 0.89 8.10 -2.39 -0.02 0.88 16
40 H 0.09 0.91 8.10 -2.39 -0.02 0.89 16
41 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16
42 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16
43 H 0.18 2.60 8.06 -2.91 -0.02 2.57 16
44 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16
45 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16
46 H 0.06 2.73 5.81 -2.39 -0.01 2.72 16
47 H 0.06 3.96 5.87 -2.38 -0.01 3.95 16
48 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16
49 H 0.25 15.24 8.31 -92.70 -0.77 14.47 16
50 H 0.01 0.65 6.28 -2.39 -0.01 0.64 16
51 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16
Total: -1.00 -90.78 408.41 3.43 -87.35
By element:
Atomic # 1 Polarization: 12.41 SS G_CDS: 0.91 Total: 13.32 kcal
Atomic # 6 Polarization: 8.10 SS G_CDS: 7.73 Total: 15.83 kcal
Atomic # 7 Polarization: -124.40 SS G_CDS: -6.17 Total: -130.56 kcal
Atomic # 8 Polarization: -36.11 SS G_CDS: -1.08 Total: -37.19 kcal
Atomic # 14 Polarization: 49.22 SS G_CDS: 2.03 Total: 51.25 kcal
Total: -90.78 3.43 -87.35 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001317766309.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.946 kcal
(2) G-P(sol) polarization free energy of solvation -90.778 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.832 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.349 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.403 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds