Wall clock time and date at job start Wed Apr 1 2020 05:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46496 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.34779 * 120.00216 * 90.00221 * 4 3 2 6 6 O 1.21274 * 119.99999 * 179.97438 * 5 4 3 7 7 C 1.50703 * 119.99541 * 359.97438 * 5 4 3 8 8 O 1.42897 * 109.46736 * 179.97438 * 7 5 4 9 9 C 1.42908 * 114.00054 * 180.02562 * 8 7 5 10 10 C 1.50695 * 109.47289 * 180.02562 * 9 8 7 11 11 C 1.38655 * 120.79193 * 269.72057 * 10 9 8 12 12 C 1.38200 * 119.16182 * 179.79993 * 11 10 9 13 13 N 1.31866 * 120.76365 * 0.48320 * 12 11 10 14 14 C 1.31863 * 121.72911 * 359.74188 * 13 12 11 15 15 C 1.38207 * 120.76296 * 0.02562 * 14 13 12 16 16 C 1.46502 * 120.00058 * 270.00039 * 4 3 2 17 17 H 1.08998 * 110.64014 * 1.69237 * 16 4 3 18 18 C 1.55154 * 110.71989 * 125.02539 * 16 4 3 19 19 C 1.54912 * 101.58014 * 153.86625 * 18 16 4 20 20 N 1.47423 * 104.83502 * 322.99097 * 19 18 16 21 21 C 1.36930 * 125.65201 * 204.09881 * 20 19 18 22 22 H 1.07996 * 120.00628 * 180.02562 * 21 20 19 23 23 C 1.38813 * 119.99956 * 0.03509 * 21 20 19 24 24 N 1.31622 * 119.99834 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00375 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46727 * 59.99784 * 25 23 21 27 27 H 1.48498 * 109.47421 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46960 * 300.00127 * 25 23 21 29 29 C 1.47026 * 108.70168 * 24.12752 * 20 19 18 30 30 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 32 32 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 34 34 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 35 35 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 36 36 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 37 37 H 1.09000 * 109.47193 * 300.00050 * 7 5 4 38 38 H 1.09004 * 109.47388 * 60.00115 * 7 5 4 39 39 H 1.09002 * 109.46561 * 299.99801 * 9 8 7 40 40 H 1.08997 * 109.46835 * 59.99720 * 9 8 7 41 41 H 1.08003 * 120.41446 * 0.02562 * 11 10 9 42 42 H 1.08002 * 119.61428 * 180.25065 * 12 11 10 43 43 H 1.08001 * 119.61714 * 179.97438 * 14 13 12 44 44 H 1.08003 * 120.41596 * 179.97438 * 15 14 13 45 45 H 1.09002 * 111.00448 * 271.93908 * 18 16 4 46 46 H 1.08996 * 111.00683 * 35.79194 * 18 16 4 47 47 H 1.09004 * 110.36430 * 204.15522 * 19 18 16 48 48 H 1.08995 * 110.36763 * 81.83021 * 19 18 16 49 49 H 0.97006 * 120.00130 * 179.97438 * 24 23 21 50 50 H 1.09001 * 109.88212 * 239.53037 * 29 20 19 51 51 H 1.08998 * 109.88273 * 118.35907 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1784 1.4427 -1.1681 6 8 5.3911 1.4432 -1.1686 7 6 3.4243 1.4424 -2.4729 8 8 4.3524 1.4433 -3.5594 9 6 3.7373 1.4437 -4.8493 10 6 4.8035 1.4440 -5.9143 11 6 5.3016 2.6352 -6.4196 12 6 6.2821 2.5962 -7.3928 13 7 6.7364 1.4445 -7.8468 14 6 6.2829 0.2926 -7.3927 15 6 5.3057 0.2531 -6.4161 16 6 4.2380 1.4423 1.2678 17 1 3.5475 1.4121 2.1106 18 6 5.2338 0.2539 1.3261 19 6 6.3054 0.7939 2.3058 20 7 6.4179 2.2292 1.9884 21 6 7.5098 3.0179 2.2350 22 1 7.4932 4.0632 1.9640 23 6 8.6382 2.4738 2.8330 24 7 8.6587 1.1997 3.1626 25 14 10.1275 3.5499 3.1701 26 1 9.7407 4.6603 4.0771 27 1 11.1920 2.7356 3.8095 28 1 10.6338 4.1091 1.8909 29 6 5.1633 2.6737 1.3639 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 2.7979 0.5522 -2.5303 38 1 2.7972 2.3322 -2.5304 39 1 3.1176 0.5534 -4.9565 40 1 3.1168 2.3334 -4.9556 41 1 4.9306 3.5816 -6.0547 42 1 6.6782 3.5197 -7.7887 43 1 6.6789 -0.6306 -7.7892 44 1 4.9380 -0.6935 -6.0486 45 1 4.7534 -0.6391 1.7261 46 1 5.6653 0.0572 0.3448 47 1 7.2589 0.2927 2.1390 48 1 5.9797 0.6579 3.3370 49 1 9.4474 0.8194 3.5803 50 1 5.3640 3.0652 0.3666 51 1 4.6950 3.4422 1.9789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317766309.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:30 Heat of formation + Delta-G solvation = -28.402757 kcal Electronic energy + Delta-G solvation = -30922.071334 eV Core-core repulsion = 26821.992918 eV Total energy + Delta-G solvation = -4100.078416 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.46528 -41.08886 -39.07821 -38.08652 -37.09630 -34.63277 -34.17497 -33.25231 -32.16444 -31.20842 -29.94428 -28.62924 -27.31732 -26.90613 -25.96282 -24.44159 -23.00379 -22.90718 -22.33895 -21.98227 -19.91468 -18.98287 -18.29864 -18.00785 -17.69555 -17.51775 -16.87890 -16.82575 -16.55597 -16.48095 -15.96124 -15.59736 -15.47667 -15.38390 -14.85844 -14.75831 -14.57380 -14.38077 -14.10636 -13.92546 -13.73655 -13.46558 -13.29768 -13.01752 -12.93550 -12.87204 -12.69781 -12.62894 -12.48187 -12.37706 -12.18392 -12.07605 -11.98092 -11.83558 -11.59928 -11.34937 -10.81098 -10.75994 -10.71715 -10.48690 -10.39593 -10.10701 -9.59090 -8.87095 -7.77606 -5.21356 0.12512 0.18040 1.41299 1.46917 1.52661 1.66663 1.75175 2.48482 2.66675 3.08401 3.30830 3.48904 3.57848 3.74053 3.77666 3.81976 3.89608 3.95417 4.08379 4.11445 4.13793 4.18833 4.21802 4.26265 4.31131 4.41760 4.44071 4.48431 4.63254 4.68648 4.68975 4.74809 4.78904 4.86397 4.97179 4.97339 4.98481 5.02281 5.08733 5.29726 5.32484 5.34035 5.40881 5.53848 5.63093 5.73856 5.76319 5.79790 6.02062 6.30094 6.51403 6.98170 7.09791 7.31722 7.78036 8.41953 9.24026 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007437 B = 0.003166 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3764.194561 B = 8842.912477 C =11856.859946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.100 3.900 4 N -0.599 5.599 5 C 0.495 3.505 6 O -0.557 6.557 7 C 0.054 3.946 8 O -0.396 6.396 9 C 0.099 3.901 10 C -0.062 4.062 11 C -0.159 4.159 12 C 0.081 3.919 13 N -0.511 5.511 14 C 0.081 3.919 15 C -0.157 4.157 16 C 0.156 3.844 17 H 0.121 0.879 18 C -0.140 4.140 19 C 0.161 3.839 20 N -0.619 5.619 21 C -0.239 4.239 22 H 0.073 0.927 23 C -0.069 4.069 24 N -0.949 5.949 25 Si 0.982 3.018 26 H -0.272 1.272 27 H -0.289 1.289 28 H -0.284 1.284 29 C 0.130 3.870 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.153 0.847 42 H 0.176 0.824 43 H 0.177 0.823 44 H 0.155 0.845 45 H 0.082 0.918 46 H 0.056 0.944 47 H 0.063 0.937 48 H -0.003 1.003 49 H 0.247 0.753 50 H 0.013 0.987 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.592 -2.165 -17.330 29.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C -0.021 4.021 4 N -0.332 5.332 5 C 0.283 3.717 6 O -0.434 6.434 7 C -0.025 4.025 8 O -0.315 6.315 9 C 0.023 3.977 10 C -0.070 4.070 11 C -0.178 4.178 12 C -0.075 4.075 13 N -0.221 5.221 14 C -0.075 4.075 15 C -0.177 4.177 16 C 0.052 3.948 17 H 0.138 0.862 18 C -0.180 4.180 19 C 0.036 3.964 20 N -0.345 5.345 21 C -0.369 4.369 22 H 0.091 0.909 23 C -0.261 4.261 24 N -0.599 5.599 25 Si 0.810 3.190 26 H -0.198 1.198 27 H -0.214 1.214 28 H -0.210 1.210 29 C 0.004 3.996 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.113 0.887 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.171 0.829 42 H 0.193 0.807 43 H 0.194 0.806 44 H 0.172 0.828 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.015 0.985 49 H 0.056 0.944 50 H 0.031 0.969 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -21.938 -2.155 -17.873 28.379 hybrid contribution 0.596 0.415 1.104 1.321 sum -21.343 -1.741 -16.769 27.198 Atomic orbital electron populations 1.21672 0.93243 1.02401 1.02905 1.21959 0.97436 0.96190 1.02402 1.22106 0.76255 0.98206 1.05539 1.47975 1.08006 1.73197 1.04028 1.21088 0.87900 0.76337 0.86382 1.90839 1.16484 1.48503 1.87595 1.22431 0.91164 1.05304 0.83582 1.88087 1.33679 1.95832 1.13929 1.21561 0.92488 1.03919 0.79695 1.20333 0.97280 0.93817 0.95592 1.22374 0.97998 0.99652 0.97794 1.23179 0.93575 0.96819 0.93950 1.67672 1.27060 0.99517 1.27893 1.23197 0.93588 0.96800 0.93912 1.22374 0.97935 0.99639 0.97759 1.21896 0.92891 0.94029 0.86021 0.86154 1.23173 0.97098 0.97518 1.00176 1.21586 0.97584 0.84265 0.92982 1.44579 1.12278 1.07170 1.70476 1.19377 0.92435 0.92416 1.32629 0.90873 1.25663 1.01056 0.97845 1.01577 1.70070 1.29147 1.12451 1.48240 0.85100 0.78576 0.77605 0.77739 1.19780 1.21437 1.20998 1.21628 0.87067 0.95811 0.95085 0.92128 0.91027 0.92399 0.91868 0.92704 0.87552 0.88676 0.86966 0.86962 0.89211 0.89312 0.82896 0.80689 0.80588 0.82755 0.89907 0.92516 0.91898 0.98496 0.94358 0.96910 0.95673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.91 71.98 0.71 -0.39 16 2 C -0.14 -1.74 6.26 30.60 0.19 -1.55 16 3 C 0.10 1.41 5.19 86.38 0.45 1.86 16 4 N -0.60 -15.93 2.54 -791.24 -2.01 -17.94 16 5 C 0.49 15.68 6.85 87.66 0.60 16.28 16 6 O -0.56 -25.94 12.85 16.03 0.21 -25.74 16 7 C 0.05 1.05 4.97 71.24 0.35 1.41 16 8 O -0.40 -10.17 9.86 -129.94 -1.28 -11.45 16 9 C 0.10 1.54 6.11 71.23 0.44 1.98 16 10 C -0.06 -1.22 5.55 -19.67 -0.11 -1.33 16 11 C -0.16 -3.08 9.82 22.36 0.22 -2.86 16 12 C 0.08 1.68 11.18 84.68 0.95 2.63 16 13 N -0.51 -12.24 10.36 -195.85 -2.03 -14.27 16 14 C 0.08 1.66 11.18 84.68 0.95 2.61 16 15 C -0.16 -3.00 9.82 22.36 0.22 -2.78 16 16 C 0.16 5.48 3.44 46.18 0.16 5.64 16 17 H 0.12 3.50 7.88 -2.39 -0.02 3.48 16 18 C -0.14 -5.94 6.40 31.99 0.20 -5.73 16 19 C 0.16 8.75 5.89 86.86 0.51 9.26 16 20 N -0.62 -35.50 3.39 -691.98 -2.35 -37.85 16 21 C -0.24 -14.84 10.27 84.03 0.86 -13.98 16 22 H 0.07 4.39 7.83 -2.91 -0.02 4.37 16 23 C -0.07 -4.26 5.49 84.86 0.47 -3.79 16 24 N -0.95 -60.72 10.09 21.65 0.22 -60.51 16 25 Si 0.98 49.22 29.55 68.60 2.03 51.25 16 26 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 27 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 28 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 29 C 0.13 6.03 6.49 86.73 0.56 6.59 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.79 7.22 -2.39 -0.02 0.77 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.11 0.86 6.44 -2.39 -0.02 0.84 16 36 H 0.09 1.16 7.96 -2.39 -0.02 1.15 16 37 H 0.11 1.38 7.18 -2.39 -0.02 1.36 16 38 H 0.11 1.36 7.40 -2.39 -0.02 1.34 16 39 H 0.09 0.89 8.10 -2.39 -0.02 0.88 16 40 H 0.09 0.91 8.10 -2.39 -0.02 0.89 16 41 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 42 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 43 H 0.18 2.60 8.06 -2.91 -0.02 2.57 16 44 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 45 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 46 H 0.06 2.73 5.81 -2.39 -0.01 2.72 16 47 H 0.06 3.96 5.87 -2.38 -0.01 3.95 16 48 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 49 H 0.25 15.24 8.31 -92.70 -0.77 14.47 16 50 H 0.01 0.65 6.28 -2.39 -0.01 0.64 16 51 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -90.78 408.41 3.43 -87.35 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.91 Total: 13.32 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 7.73 Total: 15.83 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -6.17 Total: -130.56 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -1.08 Total: -37.19 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.03 Total: 51.25 kcal Total: -90.78 3.43 -87.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317766309.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.946 kcal (2) G-P(sol) polarization free energy of solvation -90.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds