Wall clock time and date at job start Wed Apr 1 2020 05:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47489 * 325.42736 * 3 2 1 5 5 C 1.36935 * 120.00274 * 264.05317 * 4 3 2 6 6 H 1.08001 * 120.00070 * 205.22397 * 5 4 3 7 7 C 1.38814 * 119.99954 * 25.22062 * 5 4 3 8 8 N 1.31617 * 120.00072 * 14.11868 * 7 5 4 9 9 Si 1.86799 * 120.00019 * 194.12233 * 7 5 4 10 10 H 1.48499 * 109.47312 * 89.99837 * 9 7 5 11 11 H 1.48501 * 109.46886 * 210.00174 * 9 7 5 12 12 H 1.48506 * 109.47067 * 329.99939 * 9 7 5 13 13 C 1.46497 * 119.99561 * 84.04871 * 4 3 2 14 14 C 1.50702 * 109.47209 * 90.00404 * 13 4 3 15 15 O 1.21286 * 119.99884 * 0.26802 * 14 13 4 16 16 N 1.34773 * 120.00245 * 179.97438 * 14 13 4 17 17 C 1.46926 * 120.63170 * 359.71937 * 16 14 13 18 18 C 1.53631 * 108.54277 * 126.36534 * 17 16 14 19 19 C 1.53034 * 109.24019 * 54.85971 * 18 17 16 20 20 C 1.50701 * 109.45907 * 178.48834 * 19 18 17 21 21 O 1.21284 * 119.99722 * 97.17492 * 20 19 18 22 22 N 1.34775 * 119.99805 * 277.17136 * 20 19 18 23 23 C 1.47020 * 125.65339 * 4.32977 * 22 20 19 24 24 C 1.54312 * 107.28028 * 180.96785 * 23 22 20 25 25 C 1.55160 * 102.86165 * 22.52659 * 24 23 22 26 26 C 1.47430 * 125.64346 * 184.63845 * 22 20 19 27 27 C 1.53047 * 109.53791 * 298.50975 * 19 18 17 28 28 C 1.46927 * 120.63044 * 179.97438 * 16 14 13 29 29 H 4.40645 * 5.51364 * 179.97438 * 4 1 2 30 30 H 1.09003 * 109.46388 * 205.42851 * 3 2 1 31 31 H 1.09001 * 109.47086 * 85.42973 * 3 2 1 32 32 H 0.97001 * 120.00116 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.47841 * 330.00234 * 13 4 3 34 34 H 1.09004 * 109.46839 * 209.99795 * 13 4 3 35 35 H 1.08996 * 109.58730 * 246.20168 * 17 16 14 36 36 H 1.09002 * 109.58598 * 6.63032 * 17 16 14 37 37 H 1.09001 * 109.63295 * 294.86423 * 18 17 16 38 38 H 1.09000 * 109.45233 * 174.74317 * 18 17 16 39 39 H 1.09000 * 109.45083 * 58.51986 * 19 18 17 40 40 H 1.09002 * 109.88182 * 300.51527 * 23 22 20 41 41 H 1.09002 * 109.87831 * 61.67522 * 23 22 20 42 42 H 1.08998 * 110.92474 * 264.11275 * 24 23 22 43 43 H 1.09002 * 110.59247 * 140.78364 * 24 23 22 44 44 H 1.08996 * 111.00455 * 206.23101 * 25 24 23 45 45 H 1.08997 * 111.00451 * 82.37556 * 25 24 23 46 46 H 1.08998 * 110.36235 * 274.66950 * 26 22 20 47 47 H 1.08996 * 110.37090 * 36.88521 * 26 22 20 48 48 H 1.08993 * 109.49446 * 301.41152 * 27 19 18 49 49 H 1.09005 * 109.51966 * 181.33312 * 27 19 18 50 50 H 1.09002 * 109.58613 * 353.37825 * 28 16 14 51 51 H 1.09003 * 109.58084 * 113.66005 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1364 0.7837 5 6 3.4790 -0.9648 2.0980 6 1 4.1917 -1.6311 2.5611 7 6 2.9117 0.0657 2.8351 8 7 1.8539 0.6992 2.3747 9 14 3.6497 0.5533 4.4804 10 1 4.6782 1.6035 4.2699 11 1 2.5800 1.0785 5.3665 12 1 4.2775 -0.6347 5.1129 13 6 3.2557 -2.4571 0.1614 14 6 4.6293 -2.6050 -0.4406 15 8 5.4304 -1.6985 -0.3536 16 7 4.9696 -3.7469 -1.0704 17 6 4.0145 -4.8586 -1.1729 18 6 3.8813 -5.2536 -2.6516 19 6 5.2690 -5.5635 -3.2177 20 6 5.1403 -5.9875 -4.6581 21 8 5.3176 -5.1804 -5.5459 22 7 4.8284 -7.2635 -4.9597 23 6 4.5006 -8.3179 -3.9889 24 6 4.2384 -9.6115 -4.7884 25 6 4.9936 -9.3542 -6.1191 26 6 4.7656 -7.8347 -6.3173 27 6 6.1481 -4.3138 -3.1306 28 6 6.3048 -3.9058 -1.6628 29 1 -1.0498 -0.0002 0.0003 30 1 3.0088 0.9290 0.4413 31 1 3.0094 -0.0811 -1.0244 32 1 1.4577 1.4196 2.8896 33 1 2.5033 -2.5606 -0.6205 34 1 3.1045 -3.2293 0.9157 35 1 4.3796 -5.7084 -0.5963 36 1 3.0443 -4.5434 -0.7888 37 1 3.4352 -4.4317 -3.2115 38 1 3.2484 -6.1370 -2.7358 39 1 5.7245 -6.3688 -2.6414 40 1 5.3367 -8.4654 -3.3054 41 1 3.6063 -8.0421 -3.4300 42 1 3.1723 -9.7476 -4.9700 43 1 4.6555 -10.4743 -4.2690 44 1 4.5519 -9.9253 -6.9357 45 1 6.0549 -9.5797 -6.0160 46 1 3.7865 -7.6527 -6.7605 47 1 5.5498 -7.4104 -6.9442 48 1 5.6806 -3.5008 -3.6861 49 1 7.1288 -4.5280 -3.5555 50 1 6.8463 -2.9618 -1.6018 51 1 6.8541 -4.6777 -1.1237 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327013593.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:44 Heat of formation + Delta-G solvation = -3.598145 kcal Electronic energy + Delta-G solvation = -31089.530214 eV Core-core repulsion = 26990.527407 eV Total energy + Delta-G solvation = -4099.002807 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.59206 -40.66115 -38.70536 -37.99592 -37.28150 -34.17166 -33.48742 -33.19604 -32.50909 -31.95728 -29.93841 -29.10654 -27.89645 -26.93638 -24.70015 -24.32153 -23.58803 -22.24090 -21.79222 -20.36536 -19.75849 -19.33518 -18.35895 -18.23044 -17.89882 -17.43912 -17.06151 -16.50916 -16.37442 -16.24623 -15.69929 -15.51338 -15.16510 -15.10235 -14.70197 -14.61187 -14.45343 -14.22238 -13.98632 -13.89043 -13.83608 -13.42223 -13.28871 -13.20995 -13.08259 -12.87623 -12.77928 -12.53111 -12.28601 -12.24416 -12.11359 -12.09904 -11.98497 -11.79942 -11.68133 -11.50111 -11.04381 -10.84942 -10.73903 -10.58261 -10.30348 -9.66734 -9.53001 -8.86440 -7.81368 -5.34553 1.45170 1.49423 1.54053 1.55961 1.84341 1.97347 2.09212 2.39554 2.53400 2.61914 3.30794 3.38416 3.61121 3.70653 3.73525 3.80330 3.86504 3.93774 4.07031 4.09607 4.12698 4.28258 4.31643 4.35349 4.46749 4.50716 4.53245 4.62430 4.67135 4.69855 4.73739 4.79791 4.83773 4.89267 4.93071 4.97217 5.01010 5.04988 5.09943 5.16384 5.23446 5.26622 5.33632 5.43494 5.62705 5.66106 5.72174 6.27711 6.48147 6.53717 7.07281 7.11149 7.38964 7.43484 7.77787 8.21466 9.17990 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.002262 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.914541 B =12374.859078 C =12727.844172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.131 4.131 3 C 0.280 3.720 4 N -0.580 5.580 5 C -0.263 4.263 6 H 0.063 0.937 7 C -0.042 4.042 8 N -0.910 5.910 9 Si 0.965 3.035 10 H -0.294 1.294 11 H -0.292 1.292 12 H -0.270 1.270 13 C 0.136 3.864 14 C 0.484 3.516 15 O -0.577 6.577 16 N -0.618 5.618 17 C 0.108 3.892 18 C -0.116 4.116 19 C -0.090 4.090 20 C 0.528 3.472 21 O -0.591 6.591 22 N -0.620 5.620 23 C 0.087 3.913 24 C -0.126 4.126 25 C -0.125 4.125 26 C 0.093 3.907 27 C -0.106 4.106 28 C 0.115 3.885 29 H 0.226 0.774 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.248 0.752 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.056 0.944 48 H 0.043 0.957 49 H 0.080 0.920 50 H 0.062 0.938 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.305 -27.575 -14.097 31.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.134 4.134 3 C 0.155 3.845 4 N -0.298 5.298 5 C -0.393 4.393 6 H 0.081 0.919 7 C -0.239 4.239 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.221 1.221 11 H -0.218 1.218 12 H -0.194 1.194 13 C 0.005 3.995 14 C 0.271 3.729 15 O -0.455 6.455 16 N -0.354 5.354 17 C -0.013 4.013 18 C -0.155 4.155 19 C -0.112 4.112 20 C 0.318 3.682 21 O -0.472 6.472 22 N -0.353 5.353 23 C -0.035 4.035 24 C -0.164 4.164 25 C -0.163 4.163 26 C -0.029 4.029 27 C -0.145 4.145 28 C -0.008 4.008 29 H 0.242 0.758 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.128 0.872 39 H 0.145 0.855 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.062 0.938 49 H 0.098 0.902 50 H 0.081 0.919 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.761 -26.468 -14.373 30.353 hybrid contribution 0.283 1.176 0.598 1.349 sum 4.044 -25.292 -13.775 29.083 Atomic orbital electron populations 1.24926 0.96120 1.02680 1.06249 1.24250 0.95583 0.98213 0.95351 1.17348 0.83485 0.91601 0.92102 1.43639 1.74286 1.03691 1.08194 1.19249 1.18536 1.14754 0.86784 0.91938 1.25714 0.96525 1.00499 1.01117 1.70180 1.20820 1.25107 1.39286 0.85316 0.77133 0.78153 0.80029 1.22096 1.21811 1.19434 1.20883 0.91647 0.88989 0.97934 1.22880 0.91760 0.81106 0.77171 1.90612 1.53585 1.41712 1.59589 1.48432 1.15233 1.15644 1.56072 1.22069 0.93706 0.89498 0.96071 1.21925 0.94864 1.02897 0.95768 1.21260 0.98689 0.99532 0.91672 1.20756 0.75191 0.80482 0.91748 1.90696 1.52831 1.52409 1.51256 1.48695 1.67957 1.09278 1.09411 1.22447 1.02117 0.86867 0.92052 1.22676 1.01883 0.96619 0.95211 1.22774 1.01824 0.92498 0.99240 1.22368 1.01301 0.95016 0.84220 1.21624 1.00258 0.96799 0.95779 1.21511 0.84600 1.02097 0.92608 0.75762 0.92565 0.93943 0.94229 0.89578 0.88637 0.87746 0.88531 0.93239 0.87199 0.85505 0.89529 0.89637 0.89687 0.87882 0.88229 0.90392 0.91723 0.92529 0.93825 0.90165 0.91936 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.56 19.25 74.32 1.43 -11.13 16 2 C -0.13 -6.54 11.25 31.13 0.35 -6.19 16 3 C 0.28 14.51 5.41 84.57 0.46 14.97 16 4 N -0.58 -29.68 1.97 -716.91 -1.41 -31.09 16 5 C -0.26 -14.74 9.62 84.03 0.81 -13.93 16 6 H 0.06 3.49 7.87 -2.91 -0.02 3.47 16 7 C -0.04 -2.37 4.99 84.86 0.42 -1.94 16 8 N -0.91 -53.22 9.33 21.65 0.20 -53.02 16 9 Si 0.96 46.27 29.58 68.60 2.03 48.30 16 10 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 13 C 0.14 5.37 4.50 85.63 0.39 5.76 16 14 C 0.48 18.88 7.77 87.66 0.68 19.56 16 15 O -0.58 -28.57 15.84 -3.05 -0.05 -28.62 16 16 N -0.62 -17.16 2.97 -818.12 -2.43 -19.59 16 17 C 0.11 1.89 6.37 86.51 0.55 2.44 16 18 C -0.12 -1.84 5.36 30.82 0.17 -1.68 16 19 C -0.09 -1.54 1.91 -11.51 -0.02 -1.56 16 20 C 0.53 11.49 6.98 87.66 0.61 12.10 16 21 O -0.59 -19.05 16.39 -3.04 -0.05 -19.10 16 22 N -0.62 -9.23 3.33 -811.80 -2.70 -11.93 16 23 C 0.09 0.54 6.26 86.73 0.54 1.08 16 24 C -0.13 -0.38 6.95 31.78 0.22 -0.16 16 25 C -0.13 -0.72 7.08 31.99 0.23 -0.49 16 26 C 0.09 1.26 6.89 86.86 0.60 1.85 16 27 C -0.11 -2.45 4.84 30.66 0.15 -2.30 16 28 C 0.11 2.89 6.43 86.35 0.55 3.45 16 29 H 0.23 7.98 7.80 -4.43 -0.03 7.94 16 30 H 0.06 3.27 6.78 -2.39 -0.02 3.25 16 31 H 0.04 2.06 8.12 -2.39 -0.02 2.04 16 32 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.09 3.05 7.63 -2.39 -0.02 3.04 16 34 H 0.10 3.44 7.83 -2.38 -0.02 3.42 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 1.68 5.93 -2.39 -0.01 1.67 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 1.04 6.81 -2.39 -0.02 1.03 16 39 H 0.13 1.30 7.36 -2.39 -0.02 1.29 16 40 H 0.09 0.31 7.73 -2.39 -0.02 0.30 16 41 H 0.09 0.35 6.89 -2.39 -0.02 0.34 16 42 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 44 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.06 0.98 8.08 -2.39 -0.02 0.96 16 48 H 0.04 1.32 7.93 -2.39 -0.02 1.30 16 49 H 0.08 1.73 8.14 -2.38 -0.02 1.72 16 50 H 0.06 2.00 7.01 -2.39 -0.02 1.99 16 51 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -83.28 407.93 4.64 -78.65 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.91 Total: 14.58 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 8.14 Total: 21.83 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -6.34 Total: -115.63 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -0.10 Total: -47.72 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -83.28 4.64 -78.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327013593.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.048 kcal (2) G-P(sol) polarization free energy of solvation -83.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds