Wall clock time and date at job start Wed Apr 1 2020 04:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53007 * 109.47502 * 2 1 4 4 N 1.46897 * 109.47216 * 119.99632 * 2 1 3 5 5 C 1.46897 * 111.00497 * 183.95329 * 4 2 1 6 6 C 1.46901 * 110.99767 * 59.99969 * 4 2 1 7 7 C 1.53006 * 109.47222 * 190.00144 * 6 4 2 8 8 N 1.46499 * 109.46968 * 180.02562 * 7 6 4 9 9 C 1.34781 * 119.99851 * 180.02562 * 8 7 6 10 10 O 1.21359 * 119.99673 * 0.02562 * 9 8 7 11 11 C 1.49354 * 120.00058 * 179.97438 * 9 8 7 12 12 O 1.21376 * 119.99810 * 0.02562 * 11 9 8 13 13 N 1.34781 * 120.00058 * 179.97438 * 11 9 8 14 14 C 1.39715 * 119.99781 * 185.27575 * 13 11 9 15 15 C 1.38934 * 120.07394 * 213.32338 * 14 13 11 16 16 C 1.38098 * 119.92297 * 180.02562 * 15 14 13 17 17 C 1.38295 * 120.07470 * 0.03068 * 16 15 14 18 18 C 1.50697 * 119.91952 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47160 * 90.00090 * 18 17 16 20 20 H 1.08000 * 119.99736 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99832 * 180.27507 * 19 18 17 22 22 N 1.31514 * 119.99931 * 179.72239 * 21 19 18 23 23 Si 1.86803 * 120.00056 * 359.72080 * 21 19 18 24 24 H 1.48493 * 109.47106 * 90.00492 * 23 21 19 25 25 H 1.48510 * 109.47144 * 210.00163 * 23 21 19 26 26 H 1.48498 * 109.47523 * 329.99986 * 23 21 19 27 27 C 1.38285 * 120.15328 * 0.24526 * 17 16 15 28 28 C 1.38095 * 120.07904 * 359.45568 * 27 17 16 29 29 H 1.08999 * 109.47327 * 300.00247 * 1 2 3 30 30 H 1.09004 * 109.47015 * 60.00052 * 1 2 3 31 31 H 1.09000 * 109.47612 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47327 * 239.99753 * 2 1 3 33 33 H 1.08995 * 109.47284 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46680 * 299.99542 * 3 2 1 35 35 H 1.08999 * 109.47031 * 59.99572 * 3 2 1 36 36 H 1.09003 * 109.47398 * 296.04832 * 5 4 2 37 37 H 1.08995 * 109.47079 * 56.04985 * 5 4 2 38 38 H 1.08997 * 109.47454 * 176.04704 * 5 4 2 39 39 H 1.09001 * 109.47341 * 70.00095 * 6 4 2 40 40 H 1.09001 * 109.47557 * 310.00118 * 6 4 2 41 41 H 1.09003 * 109.47133 * 60.00269 * 7 6 4 42 42 H 1.08998 * 109.47148 * 299.99719 * 7 6 4 43 43 H 0.96994 * 120.00678 * 359.97438 * 8 7 6 44 44 H 0.97001 * 119.99339 * 5.27650 * 13 11 9 45 45 H 1.07996 * 120.03554 * 0.02562 * 15 14 13 46 46 H 1.08001 * 119.95994 * 180.02562 * 16 15 14 47 47 H 1.08993 * 109.47609 * 329.99696 * 18 17 16 48 48 H 1.09000 * 109.46807 * 209.99744 * 18 17 16 49 49 H 0.97000 * 119.99774 * 179.97438 * 22 21 19 50 50 H 1.08002 * 119.96303 * 179.72578 * 27 17 16 51 51 H 1.08002 * 120.04594 * 180.24674 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 3.4849 -0.6307 1.2817 6 6 1.5485 -2.0834 1.2334 7 6 1.8625 -2.6950 2.6004 8 7 1.3933 -4.0824 2.6340 9 6 1.5632 -4.8245 3.7462 10 8 2.1045 -4.3431 4.7199 11 6 1.0843 -6.2387 3.7807 12 8 0.5426 -6.7199 2.8070 13 7 1.2547 -6.9810 4.8928 14 6 0.9077 -8.3344 4.8893 15 6 0.4149 -8.9298 6.0438 16 6 0.0734 -10.2678 6.0369 17 6 0.2221 -11.0151 4.8828 18 6 -0.1511 -12.4752 4.8795 19 6 -1.5990 -12.6227 4.4882 20 1 -2.1898 -11.7467 4.2647 21 6 -2.1708 -13.8755 4.4215 22 7 -3.4358 -14.0039 4.0853 23 14 -1.1488 -15.3905 4.8085 24 1 -1.2459 -15.6959 6.2585 25 1 -1.6578 -16.5445 4.0245 26 1 0.2696 -15.1357 4.4502 27 6 0.7177 -10.4271 3.7335 28 6 1.0554 -9.0881 3.7315 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.9192 -1.1674 0.4381 37 1 3.8068 0.4103 1.2545 38 1 3.8162 -1.0892 2.2134 39 1 2.0517 -2.6566 0.4547 40 1 0.4721 -2.1068 1.0636 41 1 1.3592 -2.1219 3.3791 42 1 2.9389 -2.6717 2.7702 43 1 0.9596 -4.4668 1.8562 44 1 1.6182 -6.5754 5.6955 45 1 0.2991 -8.3468 6.9455 46 1 -0.3101 -10.7312 6.9340 47 1 0.0003 -12.8913 5.8754 48 1 0.4748 -13.0085 4.1639 49 1 -3.8379 -14.8853 4.0380 50 1 0.8367 -11.0147 2.8352 51 1 1.4386 -8.6284 2.8325 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348053240.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:29 Heat of formation + Delta-G solvation = -36.490827 kcal Electronic energy + Delta-G solvation = -28945.232144 eV Core-core repulsion = 24844.803003 eV Total energy + Delta-G solvation = -4100.429141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.08521 -39.58159 -38.89946 -38.04910 -35.83504 -34.89895 -32.97842 -32.71515 -30.91152 -30.45625 -29.95690 -28.04852 -27.30466 -25.88846 -24.74521 -22.88986 -22.49878 -22.14618 -20.88705 -20.38232 -20.02813 -18.85549 -17.47951 -16.98472 -16.77258 -16.65692 -16.23496 -15.95885 -15.33269 -15.14608 -15.00547 -14.96038 -14.57479 -14.16091 -14.12953 -13.93992 -13.50727 -13.27506 -13.08494 -12.98122 -12.74179 -12.49290 -12.47990 -12.45136 -12.38040 -12.15657 -11.93696 -11.74191 -11.61405 -11.51081 -11.47043 -11.11957 -10.84499 -10.54740 -10.34723 -10.04008 -9.79074 -9.68006 -9.61658 -9.32302 -8.92524 -8.58779 -8.42631 -7.52723 -6.07404 -4.06862 1.04896 1.88795 1.93212 2.10869 3.03579 3.16742 3.28258 3.36295 3.38763 3.60384 4.19982 4.24784 4.35595 4.38260 4.41070 4.44275 4.54723 4.79347 4.82273 4.97783 5.00116 5.16421 5.21497 5.23197 5.28414 5.31842 5.32433 5.40121 5.42037 5.47711 5.49480 5.68354 5.74652 5.76762 5.81094 5.84909 5.90610 6.04286 6.45567 6.47084 6.48842 6.51363 6.65678 6.79389 6.90452 6.98837 6.99906 7.22161 7.46234 7.54357 7.55626 7.69326 7.84180 8.49283 8.98431 9.52501 11.05537 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023506 B = 0.001539 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.906919 B =18189.482067 C =18868.453270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 C -0.148 4.148 4 N -0.533 5.533 5 C 0.013 3.987 6 C 0.037 3.963 7 C 0.121 3.879 8 N -0.701 5.701 9 C 0.514 3.486 10 O -0.518 6.518 11 C 0.501 3.499 12 O -0.499 6.499 13 N -0.635 5.635 14 C 0.101 3.899 15 C -0.135 4.135 16 C -0.105 4.105 17 C -0.033 4.033 18 C 0.014 3.986 19 C -0.514 4.514 20 H 0.074 0.926 21 C 0.069 3.931 22 N -0.899 5.899 23 Si 0.878 3.122 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.265 1.265 27 C -0.105 4.105 28 C -0.114 4.114 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.027 0.973 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.414 0.586 44 H 0.418 0.582 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.024 0.976 48 H 0.029 0.971 49 H 0.264 0.736 50 H 0.124 0.876 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.956 29.029 -5.738 32.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 C -0.206 4.206 4 N -0.259 5.259 5 C -0.135 4.135 6 C -0.092 4.092 7 C -0.003 4.003 8 N -0.355 5.355 9 C 0.294 3.706 10 O -0.393 6.393 11 C 0.282 3.718 12 O -0.373 6.373 13 N -0.281 5.281 14 C 0.008 3.992 15 C -0.155 4.155 16 C -0.123 4.123 17 C -0.034 4.034 18 C -0.023 4.023 19 C -0.552 4.552 20 H 0.092 0.908 21 C -0.132 4.132 22 N -0.538 5.538 23 Si 0.705 3.295 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.189 1.189 27 C -0.123 4.123 28 C -0.134 4.134 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.250 0.750 44 H 0.255 0.745 45 H 0.137 0.863 46 H 0.144 0.856 47 H 0.043 0.957 48 H 0.047 0.953 49 H 0.074 0.926 50 H 0.142 0.858 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 13.648 29.211 -5.388 32.689 hybrid contribution 0.587 -1.207 -0.529 1.443 sum 14.235 28.004 -5.917 31.967 Atomic orbital electron populations 1.21936 0.94002 1.02262 1.02548 1.21642 0.95982 0.95093 0.90453 1.21926 1.01114 0.95029 1.02503 1.61929 1.10705 1.13524 1.39717 1.22577 0.86975 1.02659 1.01281 1.22349 1.02142 0.88822 0.95847 1.21417 1.00503 0.80175 0.98167 1.45632 1.60222 1.13254 1.16419 1.20020 0.80210 0.86805 0.83565 1.90778 1.41590 1.72692 1.34250 1.20077 0.80662 0.86796 0.84231 1.90823 1.39785 1.72416 1.34284 1.43016 1.61642 1.08717 1.14760 1.17523 1.03705 0.81700 0.96225 1.20778 1.01776 0.95970 0.96960 1.20887 0.99783 0.92765 0.98882 1.20358 0.92691 0.98195 0.92134 1.18820 0.98025 0.88022 0.97446 1.20944 0.93039 0.94473 1.46772 0.90766 1.24999 0.94782 0.98852 0.94580 1.69903 1.11803 1.23746 1.48311 0.86805 0.81192 0.82802 0.78703 1.20167 1.21256 1.18916 1.20963 0.99240 0.93755 0.98390 1.20975 1.01507 0.93792 0.97141 0.91502 0.91995 0.92344 0.94051 0.92380 0.92029 0.91555 0.95414 0.90559 0.90871 0.93812 0.89185 0.89827 0.90806 0.74992 0.74518 0.86272 0.85638 0.95733 0.95308 0.92598 0.85769 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 8.99 37.15 0.33 -0.41 16 2 C 0.08 0.40 2.68 -67.72 -0.18 0.22 16 3 C -0.15 -0.65 8.84 37.16 0.33 -0.32 16 4 N -0.53 -3.19 4.63 -234.89 -1.09 -4.28 16 5 C 0.01 0.07 8.95 60.06 0.54 0.61 16 6 C 0.04 0.21 4.89 -3.82 -0.02 0.20 16 7 C 0.12 0.88 5.60 -4.04 -0.02 0.86 16 8 N -0.70 -6.12 5.55 -60.76 -0.34 -6.46 16 9 C 0.51 5.90 7.89 -11.63 -0.09 5.80 16 10 O -0.52 -6.79 16.48 5.49 0.09 -6.70 16 11 C 0.50 6.71 7.62 -11.63 -0.09 6.62 16 12 O -0.50 -7.85 14.16 5.47 0.08 -7.77 16 13 N -0.64 -8.39 5.32 -10.29 -0.05 -8.45 16 14 C 0.10 1.61 6.28 -83.75 -0.53 1.08 16 15 C -0.13 -2.13 9.97 -39.37 -0.39 -2.52 16 16 C -0.10 -1.92 9.69 -39.61 -0.38 -2.30 16 17 C -0.03 -0.69 5.07 -104.58 -0.53 -1.22 16 18 C 0.01 0.33 4.17 -29.03 -0.12 0.21 16 19 C -0.51 -14.57 9.65 -34.44 -0.33 -14.90 16 20 H 0.07 2.32 7.98 -52.49 -0.42 1.90 16 21 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 22 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 23 Si 0.88 21.22 27.46 -169.99 -4.67 16.55 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.26 -6.10 6.55 56.52 0.37 -5.73 16 27 C -0.10 -2.02 9.69 -39.62 -0.38 -2.40 16 28 C -0.11 -2.00 8.65 -39.38 -0.34 -2.34 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.29 6.20 -51.93 -0.32 -0.03 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.24 6.26 -51.93 -0.32 -0.09 16 34 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.08 0.34 6.01 -51.93 -0.31 0.03 16 38 H 0.07 0.39 6.47 -51.93 -0.34 0.05 16 39 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 40 H 0.09 0.50 5.83 -51.93 -0.30 0.20 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.56 6.55 -51.93 -0.34 0.22 16 43 H 0.41 3.19 7.94 -40.82 -0.32 2.87 16 44 H 0.42 4.54 8.30 -40.82 -0.34 4.20 16 45 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.13 2.17 8.06 -52.49 -0.42 1.74 16 47 H 0.02 0.56 7.50 -51.93 -0.39 0.17 16 48 H 0.03 0.67 7.15 -51.93 -0.37 0.30 16 49 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 50 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 51 H 0.13 2.09 6.42 -52.49 -0.34 1.76 16 LS Contribution 412.62 15.07 6.22 6.22 Total: -1.00 -33.10 412.62 -9.23 -42.33 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.93 Total: 4.24 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -2.31 Total: -8.91 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.71 Total: -45.96 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.17 Total: -14.47 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.10 -9.23 -42.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348053240.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.844 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds