Wall clock time and date at job start Wed Apr 1 2020 04:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53007 * 109.47502 * 2 1 4 4 N 1.46897 * 109.47216 * 119.99632 * 2 1 3 5 5 C 1.46897 * 111.00497 * 183.95329 * 4 2 1 6 6 C 1.46901 * 110.99767 * 59.99969 * 4 2 1 7 7 C 1.53006 * 109.47222 * 190.00144 * 6 4 2 8 8 N 1.46499 * 109.46968 * 180.02562 * 7 6 4 9 9 C 1.34781 * 119.99851 * 180.02562 * 8 7 6 10 10 O 1.21359 * 119.99673 * 0.02562 * 9 8 7 11 11 C 1.49354 * 120.00058 * 179.97438 * 9 8 7 12 12 O 1.21376 * 119.99810 * 0.02562 * 11 9 8 13 13 N 1.34781 * 120.00058 * 179.97438 * 11 9 8 14 14 C 1.39715 * 119.99781 * 185.27575 * 13 11 9 15 15 C 1.38934 * 120.07394 * 213.32338 * 14 13 11 16 16 C 1.38098 * 119.92297 * 180.02562 * 15 14 13 17 17 C 1.38295 * 120.07470 * 0.03068 * 16 15 14 18 18 C 1.50697 * 119.91952 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47160 * 90.00090 * 18 17 16 20 20 H 1.08000 * 119.99736 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99832 * 180.27507 * 19 18 17 22 22 N 1.31514 * 119.99931 * 179.72239 * 21 19 18 23 23 Si 1.86803 * 120.00056 * 359.72080 * 21 19 18 24 24 H 1.48493 * 109.47106 * 90.00492 * 23 21 19 25 25 H 1.48510 * 109.47144 * 210.00163 * 23 21 19 26 26 H 1.48498 * 109.47523 * 329.99986 * 23 21 19 27 27 C 1.38285 * 120.15328 * 0.24526 * 17 16 15 28 28 C 1.38095 * 120.07904 * 359.45568 * 27 17 16 29 29 H 1.08999 * 109.47327 * 300.00247 * 1 2 3 30 30 H 1.09004 * 109.47015 * 60.00052 * 1 2 3 31 31 H 1.09000 * 109.47612 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47327 * 239.99753 * 2 1 3 33 33 H 1.08995 * 109.47284 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46680 * 299.99542 * 3 2 1 35 35 H 1.08999 * 109.47031 * 59.99572 * 3 2 1 36 36 H 1.09003 * 109.47398 * 296.04832 * 5 4 2 37 37 H 1.08995 * 109.47079 * 56.04985 * 5 4 2 38 38 H 1.08997 * 109.47454 * 176.04704 * 5 4 2 39 39 H 1.09001 * 109.47341 * 70.00095 * 6 4 2 40 40 H 1.09001 * 109.47557 * 310.00118 * 6 4 2 41 41 H 1.09003 * 109.47133 * 60.00269 * 7 6 4 42 42 H 1.08998 * 109.47148 * 299.99719 * 7 6 4 43 43 H 0.96994 * 120.00678 * 359.97438 * 8 7 6 44 44 H 0.97001 * 119.99339 * 5.27650 * 13 11 9 45 45 H 1.07996 * 120.03554 * 0.02562 * 15 14 13 46 46 H 1.08001 * 119.95994 * 180.02562 * 16 15 14 47 47 H 1.08993 * 109.47609 * 329.99696 * 18 17 16 48 48 H 1.09000 * 109.46807 * 209.99744 * 18 17 16 49 49 H 0.97000 * 119.99774 * 179.97438 * 22 21 19 50 50 H 1.08002 * 119.96303 * 179.72578 * 27 17 16 51 51 H 1.08002 * 120.04594 * 180.24674 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 3.4849 -0.6307 1.2817 6 6 1.5485 -2.0834 1.2334 7 6 1.8625 -2.6950 2.6004 8 7 1.3933 -4.0824 2.6340 9 6 1.5632 -4.8245 3.7462 10 8 2.1045 -4.3431 4.7199 11 6 1.0843 -6.2387 3.7807 12 8 0.5426 -6.7199 2.8070 13 7 1.2547 -6.9810 4.8928 14 6 0.9077 -8.3344 4.8893 15 6 0.4149 -8.9298 6.0438 16 6 0.0734 -10.2678 6.0369 17 6 0.2221 -11.0151 4.8828 18 6 -0.1511 -12.4752 4.8795 19 6 -1.5990 -12.6227 4.4882 20 1 -2.1898 -11.7467 4.2647 21 6 -2.1708 -13.8755 4.4215 22 7 -3.4358 -14.0039 4.0853 23 14 -1.1488 -15.3905 4.8085 24 1 -1.2459 -15.6959 6.2585 25 1 -1.6578 -16.5445 4.0245 26 1 0.2696 -15.1357 4.4502 27 6 0.7177 -10.4271 3.7335 28 6 1.0554 -9.0881 3.7315 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.9192 -1.1674 0.4381 37 1 3.8068 0.4103 1.2545 38 1 3.8162 -1.0892 2.2134 39 1 2.0517 -2.6566 0.4547 40 1 0.4721 -2.1068 1.0636 41 1 1.3592 -2.1219 3.3791 42 1 2.9389 -2.6717 2.7702 43 1 0.9596 -4.4668 1.8562 44 1 1.6182 -6.5754 5.6955 45 1 0.2991 -8.3468 6.9455 46 1 -0.3101 -10.7312 6.9340 47 1 0.0003 -12.8913 5.8754 48 1 0.4748 -13.0085 4.1639 49 1 -3.8379 -14.8853 4.0380 50 1 0.8367 -11.0147 2.8352 51 1 1.4386 -8.6284 2.8325 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348053240.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:27 Heat of formation + Delta-G solvation = -59.885580 kcal Electronic energy + Delta-G solvation = -28946.246616 eV Core-core repulsion = 24844.803003 eV Total energy + Delta-G solvation = -4101.443614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.15715 -40.60547 -39.57452 -39.19562 -36.83389 -35.99933 -34.92097 -33.22061 -32.63936 -31.84503 -30.51111 -29.19813 -28.29371 -26.47772 -25.80454 -24.30007 -23.90478 -22.91166 -22.03751 -21.40578 -20.84575 -19.85869 -18.95595 -18.56248 -17.78421 -17.50784 -17.10181 -16.79200 -16.66481 -16.02836 -15.96402 -15.81567 -15.66742 -15.48516 -15.09638 -14.92247 -14.70962 -14.38649 -14.31963 -14.16867 -13.92744 -13.54077 -13.50097 -13.31743 -13.12232 -12.93939 -12.90927 -12.81358 -12.59864 -12.46872 -12.24541 -12.07164 -11.92575 -11.91401 -11.76657 -11.57936 -11.52055 -11.19951 -10.80733 -10.76200 -10.38503 -9.81585 -9.36403 -8.94994 -8.28358 -6.33934 -0.05613 0.52391 0.63079 1.11970 1.38410 1.40503 1.52384 1.99766 2.37007 2.38264 2.91804 2.96760 3.06141 3.30298 3.73271 3.91847 3.99485 4.03410 4.08642 4.09209 4.28525 4.35869 4.41078 4.51231 4.51417 4.55655 4.58696 4.61210 4.73872 4.81156 4.83805 4.92166 4.93603 5.00604 5.02100 5.05559 5.07813 5.13770 5.21629 5.27948 5.31910 5.32402 5.39902 5.51330 5.58341 5.80387 5.97725 6.01922 6.07615 6.09483 6.22228 6.28756 6.61288 6.72827 6.79597 7.29688 8.88298 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023506 B = 0.001539 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.906919 B =18189.482067 C =18868.453270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.074 3.926 3 C -0.145 4.145 4 N -0.543 5.543 5 C 0.013 3.987 6 C 0.042 3.958 7 C 0.125 3.875 8 N -0.686 5.686 9 C 0.521 3.479 10 O -0.534 6.534 11 C 0.503 3.497 12 O -0.524 6.524 13 N -0.627 5.627 14 C 0.111 3.889 15 C -0.125 4.125 16 C -0.111 4.111 17 C -0.068 4.068 18 C 0.021 3.979 19 C -0.522 4.522 20 H 0.025 0.975 21 C 0.007 3.993 22 N -0.950 5.950 23 Si 0.953 3.047 24 H -0.263 1.263 25 H -0.285 1.285 26 H -0.245 1.245 27 C -0.116 4.116 28 C -0.121 4.121 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.029 0.971 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.420 0.580 44 H 0.431 0.569 45 H 0.157 0.843 46 H 0.134 0.866 47 H 0.036 0.964 48 H 0.031 0.969 49 H 0.267 0.733 50 H 0.121 0.879 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.823 30.198 -5.160 34.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 C -0.203 4.203 4 N -0.268 5.268 5 C -0.135 4.135 6 C -0.086 4.086 7 C 0.002 3.998 8 N -0.340 5.340 9 C 0.301 3.699 10 O -0.411 6.411 11 C 0.285 3.715 12 O -0.399 6.399 13 N -0.274 5.274 14 C 0.017 3.983 15 C -0.145 4.145 16 C -0.129 4.129 17 C -0.069 4.069 18 C -0.016 4.016 19 C -0.560 4.560 20 H 0.044 0.956 21 C -0.190 4.190 22 N -0.591 5.591 23 Si 0.775 3.225 24 H -0.188 1.188 25 H -0.210 1.210 26 H -0.168 1.168 27 C -0.135 4.135 28 C -0.141 4.141 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.258 0.742 44 H 0.271 0.729 45 H 0.175 0.825 46 H 0.151 0.849 47 H 0.054 0.946 48 H 0.050 0.950 49 H 0.076 0.924 50 H 0.139 0.861 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 15.537 30.429 -4.814 34.504 hybrid contribution -0.032 -1.365 -0.765 1.565 sum 15.505 29.064 -5.579 33.410 Atomic orbital electron populations 1.21926 0.93870 1.02189 1.02614 1.21693 0.96113 0.95465 0.90079 1.21903 1.01317 0.94450 1.02601 1.61940 1.11191 1.13438 1.40249 1.22596 0.86568 1.03147 1.01202 1.22280 1.02464 0.88938 0.94909 1.21464 1.00361 0.79046 0.98929 1.45627 1.59051 1.13564 1.15739 1.19609 0.80315 0.85950 0.84070 1.90781 1.42690 1.72667 1.34954 1.20446 0.79849 0.87531 0.83633 1.90820 1.40827 1.73130 1.35135 1.42954 1.61374 1.07601 1.15519 1.17618 1.02128 0.82794 0.95720 1.21071 1.00064 0.95135 0.98213 1.21047 0.99679 0.93839 0.98369 1.20248 0.95539 0.97197 0.93885 1.18662 0.94737 0.90568 0.97679 1.21192 0.95324 0.93011 1.46471 0.95631 1.26004 0.95980 1.02693 0.94280 1.70070 1.14078 1.24823 1.50108 0.85625 0.80086 0.77727 0.79042 1.18764 1.21039 1.16797 1.20990 0.99800 0.94691 0.97991 1.21042 1.01685 0.93223 0.98116 0.92183 0.91182 0.92478 0.94108 0.92039 0.91216 0.92160 0.95287 0.89896 0.91071 0.93345 0.88811 0.90461 0.90711 0.74249 0.72872 0.82504 0.84860 0.94607 0.95039 0.92395 0.86094 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.99 71.98 0.65 -0.65 16 2 C 0.07 0.68 2.68 44.91 0.12 0.80 16 3 C -0.15 -1.08 8.84 71.98 0.64 -0.44 16 4 N -0.54 -5.76 4.63 -897.06 -4.15 -9.91 16 5 C 0.01 0.11 8.95 127.69 1.14 1.26 16 6 C 0.04 0.43 4.89 86.30 0.42 0.85 16 7 C 0.12 1.64 5.60 86.38 0.48 2.13 16 8 N -0.69 -10.91 5.55 -464.49 -2.58 -13.48 16 9 C 0.52 11.08 7.89 87.24 0.69 11.77 16 10 O -0.53 -13.03 16.48 -3.27 -0.05 -13.08 16 11 C 0.50 12.68 7.62 87.24 0.67 13.34 16 12 O -0.52 -15.93 14.16 -3.33 -0.05 -15.98 16 13 N -0.63 -15.23 5.32 -304.83 -1.62 -16.85 16 14 C 0.11 3.35 6.28 38.22 0.24 3.59 16 15 C -0.13 -3.67 9.97 22.40 0.22 -3.45 16 16 C -0.11 -3.95 9.69 22.25 0.22 -3.74 16 17 C -0.07 -2.84 5.07 -19.84 -0.10 -2.94 16 18 C 0.02 0.98 4.17 29.10 0.12 1.10 16 19 C -0.52 -30.49 9.65 25.60 0.25 -30.24 16 20 H 0.03 1.68 7.98 -2.91 -0.02 1.66 16 21 C 0.01 0.43 5.47 84.65 0.46 0.89 16 22 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 23 Si 0.95 43.72 27.46 68.60 1.88 45.60 16 24 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.24 -10.35 6.55 99.48 0.65 -9.70 16 27 C -0.12 -4.51 9.69 22.25 0.22 -4.30 16 28 C -0.12 -4.15 8.65 22.40 0.19 -3.96 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.06 0.50 6.20 -2.39 -0.01 0.49 16 32 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.41 6.26 -2.39 -0.01 0.40 16 34 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.03 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.08 0.63 6.01 -2.39 -0.01 0.62 16 38 H 0.07 0.67 6.47 -2.39 -0.02 0.65 16 39 H 0.05 0.46 8.12 -2.39 -0.02 0.45 16 40 H 0.09 0.90 5.83 -2.39 -0.01 0.89 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 1.02 6.55 -2.39 -0.02 1.00 16 43 H 0.42 5.84 7.94 -92.71 -0.74 5.10 16 44 H 0.43 8.21 8.30 -92.71 -0.77 7.44 16 45 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 46 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 47 H 0.04 1.59 7.50 -2.39 -0.02 1.57 16 48 H 0.03 1.45 7.15 -2.39 -0.02 1.43 16 49 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 50 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 51 H 0.13 4.30 6.42 -2.91 -0.02 4.28 16 Total: -1.00 -72.86 412.62 -0.25 -73.11 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: -0.60 Total: 24.31 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 6.62 Total: -13.99 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -8.05 Total: -99.97 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.10 Total: -29.06 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.60 kcal Total: -72.86 -0.25 -73.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348053240.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.223 kcal (2) G-P(sol) polarization free energy of solvation -72.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds