Wall clock time and date at job start Wed Apr 1 2020 04:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46810 * 2 1 4 4 N 1.46495 * 109.47004 * 119.99508 * 2 1 3 5 5 C 1.46499 * 120.00321 * 304.37353 * 4 2 1 6 6 C 1.39674 * 119.99700 * 124.36962 * 4 2 1 7 7 C 1.38982 * 120.04347 * 353.89691 * 6 4 2 8 8 C 1.38121 * 120.06946 * 180.02562 * 7 6 4 9 9 C 1.38197 * 120.13997 * 0.02562 * 8 7 6 10 10 C 1.38899 * 120.07614 * 359.97438 * 9 8 7 11 11 N 1.39949 * 120.02843 * 179.97438 * 10 9 8 12 12 C 1.34773 * 119.99742 * 33.99048 * 11 10 9 13 13 O 1.21584 * 120.00500 * 5.26195 * 12 11 10 14 14 N 1.34781 * 119.99887 * 185.25897 * 12 11 10 15 15 C 1.47746 * 125.82057 * 359.91282 * 14 12 11 16 16 C 1.54904 * 104.84229 * 155.82699 * 15 14 12 17 17 C 1.55157 * 101.58351 * 37.09198 * 16 15 14 18 18 O 1.42904 * 110.72187 * 82.86152 * 17 16 15 19 19 C 1.50702 * 110.87373 * 206.06821 * 17 16 15 20 20 H 1.07997 * 120.00302 * 112.17363 * 19 17 16 21 21 C 1.37885 * 119.99781 * 292.17017 * 19 17 16 22 22 N 1.31504 * 120.00194 * 187.94004 * 21 19 17 23 23 Si 1.86804 * 119.99862 * 7.93837 * 21 19 17 24 24 H 1.48501 * 109.46974 * 94.87447 * 23 21 19 25 25 H 1.48496 * 109.47094 * 214.87843 * 23 21 19 26 26 H 1.48500 * 109.47171 * 334.87767 * 23 21 19 27 27 C 1.47020 * 125.64956 * 179.97438 * 14 12 11 28 28 C 1.38743 * 119.94005 * 0.23032 * 10 9 8 29 29 H 1.09001 * 109.47169 * 300.00170 * 1 2 3 30 30 H 1.08998 * 109.46622 * 60.00252 * 1 2 3 31 31 H 1.09002 * 109.46830 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47169 * 239.99829 * 2 1 3 33 33 H 1.09004 * 109.46958 * 179.97438 * 3 2 1 34 34 H 1.09007 * 109.47352 * 299.99599 * 3 2 1 35 35 H 1.09001 * 109.47394 * 59.99967 * 3 2 1 36 36 H 1.09003 * 109.47300 * 269.99937 * 5 4 2 37 37 H 1.08996 * 109.47048 * 29.99869 * 5 4 2 38 38 H 1.08997 * 109.47252 * 149.99737 * 5 4 2 39 39 H 1.08007 * 119.96283 * 359.97438 * 7 6 4 40 40 H 1.07992 * 119.93057 * 179.97438 * 8 7 6 41 41 H 1.07995 * 119.95718 * 179.97438 * 9 8 7 42 42 H 0.96993 * 120.00101 * 213.98804 * 11 10 9 43 43 H 1.08998 * 110.29379 * 37.01659 * 15 14 12 44 44 H 1.08998 * 110.43200 * 274.70145 * 15 14 12 45 45 H 1.09004 * 111.00701 * 279.01829 * 16 15 14 46 46 H 1.09002 * 111.00403 * 155.16538 * 16 15 14 47 47 H 0.96698 * 113.99987 * 185.02828 * 18 17 16 48 48 H 0.97000 * 120.00370 * 179.97438 * 22 21 19 49 49 H 1.09005 * 109.88006 * 61.61507 * 27 14 12 50 50 H 1.09000 * 109.88281 * 300.60135 * 27 14 12 51 51 H 1.08002 * 120.07395 * 179.72613 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.5872 -0.2482 2.5246 6 6 2.8949 -1.7706 1.0701 7 6 3.2051 -2.2717 -0.1886 8 6 4.0715 -3.3401 -0.3138 9 6 4.6321 -3.9145 0.8112 10 6 4.3263 -3.4184 2.0720 11 7 4.8942 -4.0011 3.2106 12 6 6.1447 -4.5012 3.1591 13 8 6.8145 -4.3614 2.1541 14 7 6.6527 -5.1562 4.2218 15 6 5.9566 -5.3978 5.5024 16 6 6.6482 -6.6483 6.1003 17 6 8.1254 -6.4146 5.6874 18 8 8.7757 -5.5381 6.6099 19 6 8.8673 -7.7223 5.5839 20 1 9.2029 -8.0780 4.6210 21 6 9.1177 -8.4645 6.7186 22 7 9.8964 -9.5222 6.6540 23 14 8.3506 -7.9676 8.3478 24 1 7.0916 -8.7275 8.5544 25 1 9.2968 -8.2674 9.4523 26 1 8.0536 -6.5127 8.3318 27 6 7.9955 -5.7498 4.3008 28 6 3.4531 -2.3480 2.2018 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8900 36 1 2.2800 0.5053 2.8993 37 1 0.5867 0.1791 2.4583 38 1 1.5742 -1.1000 3.2046 39 1 2.7675 -1.8258 -1.0696 40 1 4.3106 -3.7280 -1.2929 41 1 5.3088 -4.7500 0.7098 42 1 4.3879 -4.0450 4.0367 43 1 4.8994 -5.5966 5.3264 44 1 6.0769 -4.5431 6.1681 45 1 6.2574 -7.5623 5.6531 46 1 6.5447 -6.6708 7.1852 47 1 9.6774 -5.2985 6.3558 48 1 10.0728 -10.0442 7.4523 49 1 8.7515 -4.9723 4.1903 50 1 8.1165 -6.4983 3.5178 51 1 3.2103 -1.9634 3.1814 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364086372.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:56 Heat of formation + Delta-G solvation = -17.403111 kcal Electronic energy + Delta-G solvation = -30700.254492 eV Core-core repulsion = 26600.653056 eV Total energy + Delta-G solvation = -4099.601436 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.58279 -39.54792 -38.11811 -36.97209 -34.63584 -34.41001 -32.88927 -32.42477 -30.61254 -29.53096 -29.39180 -28.29721 -27.60206 -26.32350 -25.25171 -23.13390 -22.38342 -22.02660 -20.54995 -19.70513 -19.37671 -18.35426 -17.81614 -17.44057 -16.15382 -15.95696 -15.74608 -15.29429 -15.05904 -14.95121 -14.82694 -14.58197 -14.19230 -13.97059 -13.81638 -13.54441 -13.36972 -13.32464 -12.98012 -12.80110 -12.63554 -12.48746 -12.41912 -12.26525 -12.18115 -11.71080 -11.68614 -11.61894 -11.38641 -11.34086 -11.16852 -10.86785 -10.67462 -10.46069 -10.32660 -10.10330 -9.81899 -9.55233 -9.04484 -8.76397 -8.50312 -8.36405 -8.03407 -7.30140 -6.23936 -4.35209 1.41376 1.67441 2.67393 2.95787 3.28053 3.36480 3.40296 3.57814 3.98860 4.08681 4.37812 4.40399 4.68053 4.69086 4.81666 4.96995 5.03471 5.10817 5.14612 5.16787 5.21788 5.23257 5.25786 5.35996 5.42500 5.46269 5.49768 5.53145 5.58452 5.62731 5.67966 5.71646 5.80047 5.83296 5.84768 6.06414 6.16125 6.36445 6.42205 6.45212 6.55339 6.63462 6.64501 6.70701 6.99384 7.09291 7.13772 7.24868 7.42293 7.47125 8.11579 8.16857 8.70454 8.75675 8.86933 9.39273 10.86236 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026285 B = 0.002076 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.997402 B =13481.135264 C =14013.017448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 C -0.164 4.164 4 N -0.629 5.629 5 C 0.093 3.907 6 C 0.233 3.767 7 C -0.221 4.221 8 C -0.054 4.054 9 C -0.175 4.175 10 C 0.222 3.778 11 N -0.689 5.689 12 C 0.718 3.282 13 O -0.575 6.575 14 N -0.624 5.624 15 C 0.098 3.902 16 C -0.125 4.125 17 C 0.218 3.782 18 O -0.571 6.571 19 C -0.552 4.552 20 H 0.079 0.921 21 C 0.089 3.911 22 N -0.885 5.885 23 Si 0.871 3.129 24 H -0.288 1.288 25 H -0.297 1.297 26 H -0.220 1.220 27 C 0.113 3.887 28 C -0.229 4.229 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.133 0.867 42 H 0.404 0.596 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.365 0.635 48 H 0.267 0.733 49 H 0.058 0.942 50 H 0.074 0.926 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.744 18.794 -9.417 28.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 C -0.222 4.222 4 N -0.341 5.341 5 C -0.050 4.050 6 C 0.132 3.868 7 C -0.244 4.244 8 C -0.073 4.073 9 C -0.197 4.197 10 C 0.125 3.875 11 N -0.336 5.336 12 C 0.421 3.579 13 O -0.452 6.452 14 N -0.361 5.361 15 C -0.024 4.024 16 C -0.163 4.163 17 C 0.178 3.822 18 O -0.378 6.378 19 C -0.589 4.589 20 H 0.097 0.903 21 C -0.117 4.117 22 N -0.520 5.520 23 Si 0.699 3.301 24 H -0.215 1.215 25 H -0.224 1.224 26 H -0.143 1.143 27 C -0.009 4.009 28 C -0.255 4.255 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.151 0.849 42 H 0.239 0.761 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.106 0.894 46 H 0.096 0.904 47 H 0.213 0.787 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.092 0.908 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.812 18.821 -9.732 29.008 hybrid contribution -0.058 0.084 1.146 1.151 sum -19.870 18.905 -8.586 28.740 Atomic orbital electron populations 1.22193 0.95416 1.02446 1.02181 1.21022 0.93740 0.92870 0.88664 1.22201 1.01899 0.96116 1.02016 1.46421 1.49608 1.32771 1.05304 1.21559 0.99391 0.99895 0.84196 1.17405 0.89269 0.86945 0.93209 1.20594 1.06299 1.02118 0.95347 1.20737 0.94215 0.94269 0.98096 1.20999 1.04403 1.03511 0.90812 1.17200 0.92844 0.91139 0.86284 1.42716 1.15339 1.62240 1.13339 1.15392 0.80860 0.78623 0.83066 1.90924 1.59584 1.63655 1.31063 1.47806 1.17929 1.56911 1.13417 1.22434 0.95646 0.99385 0.84975 1.23142 0.96055 0.96203 1.00863 1.19950 0.90057 0.88924 0.83286 1.86528 1.31413 1.68781 1.51071 1.21187 1.38217 1.03246 0.96271 0.90289 1.24946 0.93289 0.93965 0.99472 1.69947 1.34511 1.17491 1.30081 0.87102 0.78658 0.81898 0.82446 1.21480 1.22415 1.14314 1.22729 0.80841 0.96413 1.00936 1.20206 1.07113 1.00321 0.97834 0.92339 0.91623 0.92139 0.88941 0.92181 0.91766 0.92533 0.93711 0.91607 0.91508 0.86282 0.86001 0.84943 0.76062 0.92005 0.91512 0.89375 0.90366 0.78734 0.92366 0.92376 0.90787 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 9.08 37.16 0.34 -0.56 16 2 C 0.14 0.97 3.20 -67.93 -0.22 0.76 16 3 C -0.16 -1.02 9.26 37.16 0.34 -0.67 16 4 N -0.63 -5.51 2.90 -172.02 -0.50 -6.00 16 5 C 0.09 0.65 9.28 59.85 0.56 1.21 16 6 C 0.23 2.62 6.53 -83.81 -0.55 2.07 16 7 C -0.22 -2.46 9.31 -39.35 -0.37 -2.82 16 8 C -0.05 -0.67 10.03 -39.64 -0.40 -1.06 16 9 C -0.18 -2.63 8.65 -39.35 -0.34 -2.97 16 10 C 0.22 3.19 6.26 -83.72 -0.52 2.66 16 11 N -0.69 -10.01 5.29 -14.25 -0.08 -10.08 16 12 C 0.72 13.12 8.23 -86.92 -0.71 12.41 16 13 O -0.58 -12.36 14.40 5.29 0.08 -12.29 16 14 N -0.62 -11.33 3.34 -175.98 -0.59 -11.92 16 15 C 0.10 1.56 6.55 -2.35 -0.02 1.54 16 16 C -0.12 -2.40 5.03 -24.59 -0.12 -2.52 16 17 C 0.22 4.72 0.67 -89.94 -0.06 4.66 16 18 O -0.57 -12.00 10.08 -35.23 -0.35 -12.36 16 19 C -0.55 -14.41 8.82 -34.44 -0.30 -14.71 16 20 H 0.08 2.27 7.77 -52.49 -0.41 1.86 16 21 C 0.09 2.42 5.46 -17.82 -0.10 2.32 16 22 N -0.88 -25.84 13.96 55.43 0.77 -25.07 16 23 Si 0.87 20.49 24.57 -169.99 -4.18 16.31 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.30 -7.20 7.11 56.52 0.40 -6.79 16 26 H -0.22 -4.94 4.78 56.52 0.27 -4.67 16 27 C 0.11 2.31 6.20 -3.06 -0.02 2.29 16 28 C -0.23 -2.78 9.07 -39.20 -0.36 -3.13 16 29 H 0.06 0.30 6.53 -51.93 -0.34 -0.04 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.65 5.31 -51.93 -0.28 0.37 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.34 7.78 -51.93 -0.40 -0.07 16 36 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.36 6.21 -51.93 -0.32 0.04 16 38 H 0.07 0.46 6.46 -51.93 -0.34 0.13 16 39 H 0.12 1.07 5.74 -52.48 -0.30 0.77 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.13 2.27 6.45 -52.49 -0.34 1.93 16 42 H 0.40 4.72 7.38 -40.82 -0.30 4.42 16 43 H 0.06 0.79 7.39 -51.93 -0.38 0.40 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.09 1.72 8.05 -51.93 -0.42 1.30 16 46 H 0.08 1.51 5.04 -51.93 -0.26 1.25 16 47 H 0.37 6.77 9.08 45.56 0.41 7.19 16 48 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 50 H 0.07 1.62 7.62 -51.93 -0.40 1.22 16 51 H 0.12 1.26 6.31 -52.49 -0.33 0.93 16 LS Contribution 391.53 15.07 5.90 5.90 Total: -1.00 -32.47 391.53 -8.83 -41.30 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -7.05 Total: 12.76 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -2.85 Total: 1.45 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.39 Total: -53.08 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.28 Total: -24.64 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.18 Total: 16.31 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.47 -8.83 -41.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364086372.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.898 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds